EY702760

Overview
NameEY702760
Unique NameEY702760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702760 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.112e-19
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 3
Query:   84 YMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 344
            Y HLC ED+ W W+SF  SG  A+Y  +Y+I+Y  F    ++G  S  LY GY++ MVL   L TGT+GF + FWFV  ++S VK+D
Sbjct:  577 YFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662          
BLAST of EY702760 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 3
Query:   84 YMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 344
            Y HLC ED+ W W+SF  SG  A+Y  +Y+I+Y  F    ++G  S  LY GY++ MVL   L TGT+GF + FWFV  ++S VK+D
Sbjct:  578 YFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of EY702760 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3
Query:   84 YMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 344
            Y HLC ED+ W W+SF  SG  A+Y  +Y+++Y  F    ++G  S  LY GY++ MVL   L TGT+GF + FWFV  ++S VK+D
Sbjct:  578 YFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of EY702760 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3
Query:   84 YMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 344
            Y HLC ED+ W W+SF  SG  A+Y  +Y+++Y  F    ++G  S  LY GY++ MVL   L TGT+GF + FWFV  ++S VK+D
Sbjct:  578 YFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYF-FSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of EY702760 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 3
Query:   84 YMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 344
            Y  LC ED++WWW++F  SG  A Y+ +Y+I Y V  L ++   + + LY GY+  MVL+  L TGT+GF +++ FV  ++++VK+D
Sbjct:  558 YFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKL-DIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of EY702760 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 3
Query:   84 YMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 344
            Y  LC ED++WWW++F  SG  A Y+ +Y+I Y V  L ++   + + LY GY+  MVL+  L TGT+GF +++ FV  ++++VK+D
Sbjct:  557 YFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKL-DIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of EY702760 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 3
Query:   84 YMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 344
            Y  LC ED++WWW++F  SG  A Y+ +Y+I Y V  L ++   + + LY GY+  MVL+  L TGT+GF +++ FV  ++++VK+D
Sbjct:  558 YFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKL-DIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of EY702760 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 3
Query:   84 YMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 344
            Y  LC ED++WWW++F  SG  A Y+ +Y+I Y V  L ++   + + LY GY+  MVL+  L TGT+GF +++ FV  ++++VK+D
Sbjct:  557 YFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKL-DIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of EY702760 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 3
Query:   84 YMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 344
            Y  LC ED++WWW++F  SG  A Y+ +Y+I Y V  L ++   + + LY GY+  MVL+  L TGT+GF +++ FV  ++++VK+D
Sbjct:  557 YFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKL-DIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of EY702760 vs. ExPASy Swiss-Prot
Match: YON8_SCHPO (Transmembrane 9 superfamily protein C1105.08 OS=Schizosaccharomyces pombe GN=SPBC1105.08 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 3
Query:   84 YMHLCVEDWKWWWKSFFASGSVAIYIFLYSINYLVFDLRNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVHYLFSSVKLD 344
            Y  LC E++ WWW+SF   G   IY+F++S+ Y  F + + S   +A LY GYSL + + +    G+VGF  +F FV+ +++S+K+D
Sbjct:  544 YFQLCSENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISS-SSLATAVLYFGYSLLISVLVFFLCGSVGFFGAFLFVNKIYASIKID 629          
The following BLAST results are available for this feature:
BLAST of EY702760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TM9S2_MOUSE4.112e-1947.13Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_RAT5.371e-1947.13Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB5.371e-1945.98Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_HUMAN5.371e-1945.98Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT2.495e-1641.38Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB2.495e-1641.38Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE2.495e-1641.38Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN2.495e-1641.38Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN2.495e-1641.38Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
YON8_SCHPO2.758e-1539.08Transmembrane 9 superfamily protein C1105.08 OS=Sc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-H09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702760 ID=EY702760; Name=EY702760; organism=Citrus sinensis; type=EST; length=737bp
CCACGCGTCCGGTTTTCGGTTTCCTCTTGATTGTTTTGGTACTTCTTGTG
GTGGTTTGTGCCGAAGTGTCTCTTGTACTCACCTACATGCATCTTTGTGT
TGAGGACTGGAAATGGTGGTGGAAATCCTTCTTTGCCTCTGGATCAGTTG
CGATCTATATTTTCTTGTACTCCATAAACTACCTTGTGTTCGATCTTAGG
AATTTGAGTGGACCCGTCTCTGCAACTCTTTACTTAGGATACTCTCTCTT
CATGGTTCTAGCAATTATGCTTGCGACTGGCACTGTTGGATTCCTTTCTT
CATTCTGGTTTGTGCATTACTTGTTCTCTTCAGTGAAGCTGGACTGAAGA
ACTCTCTCCAGCTCCAAACATCGAATTTCGAAGAGCAGCATTGCGTTGGT
GATTACTTGGAGGAGAAATGACTGCAGCAACCTCTGCAAAAGTCTATCAT
ATGTTACTTTACTTTTGAATTTAATTTTGCTAGAGAACCTAGTAAATGTA
ATATCAATAATTTGTTCCCGTTTTGCATTTTAGTTACTTGGAGGTCATGG
CTTGATAGTTTTCTATACCAAAGTGTATTTGCATCCTGCAGGATTAGAGG
CTTTATCAACAAGTTGGTTGTAGCTTGTAACTTGGATTGTTGGGATTTTT
ATGTACTTTAATATTCAGTTCTTATGGATCAAAATGCAAGAAGCACAAAC
TTACATCGGCTTTTGTTTTAAAAAAAAAAAAAAAAAA
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