DY306124

Overview
NameDY306124
Unique NameDY306124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1252
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306124 vs. ExPASy Swiss-Prot
Match: WDR48_XENTR (WD repeat-containing protein 48 OS=Xenopus tropicalis GN=wdr48 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 6.655e-46
Identity = 104/233 (44.64%), Postives = 137/233 (58.80%), Query Frame = 3
Query:    3 NDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCTGEHPILQLALHDD-----NIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSF-SRARVSLEGSTPV-PVFKEPNFTIPEIPGIVQHEILNKRTPFLPKDTAGSGQLW*ISRGC 677
            N  G ++VSG TEKV+RVWDPRT  K +KL+GHTDN+++LLL+  G  CLSGSSD  IRLW LGQQRCI +Y VH + VWAL     F+HVYSGGRD  +Y TDL   +  LL+C  + P+L++ L         +WVATT SSV++WP                I G L+F S      + STP+ P+  +P+  I     I+Q  ILN +   L KDT  +   W + + C
Sbjct:  177 NQMGTVIVSGSTEKVLRVWDPRTCQKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNEGFTHVYSGGRDRKIYCTDLRNPDIRLLICEEKAPVLKMELDRSADPPLALWVATTKSSVNKWP----------------IKGILNFRSSGDYENDCSTPLSPICSQPDQVIKGGASIIQCNILNDKRHILTKDTNNNVAYWDVLKAC 393          
BLAST of DY306124 vs. ExPASy Swiss-Prot
Match: WDR48_CHICK (WD repeat-containing protein 48 OS=Gallus gallus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.141e-44
Identity = 99/232 (42.67%), Postives = 137/232 (59.05%), Query Frame = 3
Query:    3 NDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCTGEHPILQLALH-----DDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPV-PVFKEPNFTIPEIPGIVQHEILNKRTPFLPKDTAGSGQLW*ISRGC 677
            N  G ++VSG TEKV+RVWDPRT +K +KL+GHTDN+++LLL+  G  CLSGSSD  IRLW LGQQRCI +Y VH + VWAL     F+HVYSGGRD  +Y TDL   +  +L+C  + P+L++ L         IWVATT SSV++W  +G +    F+  G +              + + P+ P+  +P+  I     I+Q  ILN +   L KDT  +   W + + C
Sbjct:  177 NQMGTVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSSVNKWTLKGIHN---FRASGDY------------DNDCTNPIPPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKAC 393          
BLAST of DY306124 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 2.796e-44
Identity = 98/232 (42.24%), Postives = 136/232 (58.62%), Query Frame = 3
Query:    3 NDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCTGEHPILQLALH-----DDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPV-PVFKEPNFTIPEIPGIVQHEILNKRTPFLPKDTAGSGQLW*ISRGC 677
            N +G +++SG TEKV+RVWDPRT +K +KL+GHTDN++SLLL+  G  CLSGSSD  IRLW LGQQRCI +Y VH + VWAL     F+H+YSGGRD  +Y TDL   +  +L+C  + P+L++ L        +IWV+TT S V++W  +  +    F+  G +              + S P+ P+  +P   I     IVQ  ILN +   L KDT  S   W + + C
Sbjct:  177 NQTGTVIISGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNEAFTHIYSGGRDRKIYCTDLRNPDMRVLICEEKAPVLRMELDRSADPPQSIWVSTTKSFVNKWSLKAMHN---FRASGDY------------DNDCSAPLTPLCTQPEQVIKGGTSIVQCHILNDKRHILTKDTNNSVAFWDVLKAC 393          
BLAST of DY306124 vs. ExPASy Swiss-Prot
Match: WDR48_HUMAN (WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.769e-44
Identity = 98/232 (42.24%), Postives = 137/232 (59.05%), Query Frame = 3
Query:    3 NDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCTGEHPILQLALH-----DDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPV-PVFKEPNFTIPEIPGIVQHEILNKRTPFLPKDTAGSGQLW*ISRGC 677
            N  G ++VSG TEKV+RVWDPRT +K +KL+GHTDN+++LLL+  G  CLSGSSD  IRLW LGQQRCI +Y VH + VWAL     F+HVYSGGRD  +Y TDL   +  +L+C  + P+L++ L         IWVATT S+V++W  +G +    F+  G +              + + P+ P+  +P+  I     I+Q  ILN +   L KDT  +   W + + C
Sbjct:  177 NQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGIHN---FRASGDY------------DNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKAC 393          
BLAST of DY306124 vs. ExPASy Swiss-Prot
Match: WDR48_BOVIN (WD repeat-containing protein 48 OS=Bos taurus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 4.769e-44
Identity = 98/232 (42.24%), Postives = 137/232 (59.05%), Query Frame = 3
Query:    3 NDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCTGEHPILQLALH-----DDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPV-PVFKEPNFTIPEIPGIVQHEILNKRTPFLPKDTAGSGQLW*ISRGC 677
            N  G ++VSG TEKV+RVWDPRT +K +KL+GHTDN+++LLL+  G  CLSGSSD  IRLW LGQQRCI +Y VH + VWAL     F+HVYSGGRD  +Y TDL   +  +L+C  + P+L++ L         IWVATT S+V++W  +G +    F+  G +              + + P+ P+  +P+  I     I+Q  ILN +   L KDT  +   W + + C
Sbjct:  177 NQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGIHN---FRASGDY------------DNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHLLTKDTNNNVAYWDVLKAC 393          
BLAST of DY306124 vs. ExPASy Swiss-Prot
Match: WDR48_PONAB (WD repeat-containing protein 48 OS=Pongo abelii GN=WDR48 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 8.135e-44
Identity = 98/232 (42.24%), Postives = 137/232 (59.05%), Query Frame = 3
Query:    3 NDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCTGEHPILQLALH-----DDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPV-PVFKEPNFTIPEIPGIVQHEILNKRTPFLPKDTAGSGQLW*ISRGC 677
            N  G ++VSG TEKV+RVWDPRT +K +KL+GHTDN+++LLL+  G  CLSGSSD  IRLW LGQQRCI +Y VH + VWAL     F+HVYSGGRD  +Y TDL   +  +L+C  + P+L++ L         IWVATT S+V++W  +G +    F+  G +              + + P+ P+  +P+  I     I+Q  ILN +   L KDT  +   W + + C
Sbjct:  177 NQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWILKGIHN---FRASGDY------------DNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKAC 393          
BLAST of DY306124 vs. ExPASy Swiss-Prot
Match: WDR48_MOUSE (WD repeat-containing protein 48 OS=Mus musculus GN=Wdr48 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 8.135e-44
Identity = 98/232 (42.24%), Postives = 136/232 (58.62%), Query Frame = 3
Query:    3 NDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCTGEHPILQLALH-----DDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPV-PVFKEPNFTIPEIPGIVQHEILNKRTPFLPKDTAGSGQLW*ISRGC 677
            N  G ++VSG TEKV+RVWDPRT +K +KL+GHTDN+++LLL   G  CLSGSSD  IRLW LGQQRCI +Y VH + VWAL     F+HVYSGGRD  +Y TDL   +  +L+C  + P+L++ L         IWVATT S+V++W  +G +    F+  G +              + + P+ P+  +P+  I     I+Q  ILN +   L KDT  +   W + + C
Sbjct:  177 NQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGIHN---FRASGDY------------DNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKAC 393          
BLAST of DY306124 vs. ExPASy Swiss-Prot
Match: WDR48_MACFA (WD repeat-containing protein 48 OS=Macaca fascicularis GN=WDR48 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 4.037e-43
Identity = 97/226 (42.92%), Postives = 134/226 (59.29%), Query Frame = 3
Query:    3 NDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRE-SLLLCTGEHPILQLALH-----DDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLEGSTPV-PVFKEPNFTIPEIPGIVQHEILNKRTPFLPKDTAGSGQLW 659
            N  G ++VSG TEKV+RVWDPRT +K +KL+GHTDN+++LLL+  G  CLSGSSD  IRLW LGQQRCI +Y VH + VWAL     F+HVYSGGRD  +Y TDL   +  +L+C  + P+L++ L         IWVATT S+V++W  +G +    F+  G +              + + P+ P+  +P+  I     I+Q  ILN +   L KDT  +   W
Sbjct:  177 NQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGIHN---FRASGDY------------DNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYW 387          
BLAST of DY306124 vs. ExPASy Swiss-Prot
Match: WDR48_BRUMA (WD repeat-containing protein 48 homolog OS=Brugia malayi GN=Bm1_41555 PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 5.107e-38
Identity = 94/244 (38.52%), Postives = 135/244 (55.33%), Query Frame = 3
Query:    3 NDSGNLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLAT-RESLLLCTGEHPILQLALHDDN---IWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSFSRARVSLE------GSTPVPVFKEPNFTIPEIPGIVQHEILNKRTPFLPKDTAGSGQLW*ISRG---CWHPKWP 695
            N SG +++SG TEKV+RV+DPR   K +KLRGHTDN+++++++  G  C+S SSD  I+LW +GQQ CI S   H++SVWAL     FS VYSGGRD  ++ T +   + + L+   + P+ +L L D     IW AT +SS+ RWP                       S A++S+E      G T +P   EP+ TIP    I QH +LN +   + KDT  +  +W + +G   C H K P
Sbjct:  185 NPSGTVVISGSTEKVLRVFDPRACQKLMKLRGHTDNVKAVVVNRDGTQCISASSDGTIKLWSIGQQCCISSLKCHSESVWALQVDSNFSCVYSGGRDKRIFRTAINDFKTAQLMFIEDAPVQRLQLIDSESRFIWTATWNSSIKRWPLP---------------------SDAQISVEIKSDQYGET-IPSIHEPDLTIPGAASIRQHVVLNDKRHIVTKDTDDNVAMWDVLKGRKVCDHGKRP 406          
BLAST of DY306124 vs. ExPASy Swiss-Prot
Match: WDR48_DICDI (WD repeat-containing protein 48 homolog OS=Dictyostelium discoideum GN=DDB_G0277533 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.670e-38
Identity = 94/255 (36.86%), Postives = 138/255 (54.12%), Query Frame = 3
Query:   15 NLLVSGGTEKVVRVWDPRTGSKTIKLRGHTDNIRSLLLDSTGRYCLSGSSDSMIRLWDLGQQRCIHSY-AVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCTGEHPILQLALH--DDNIWVATTDSSVHRWPAEGRNPQKVFQRGGSFIAGNLSF------------------------------SRARVSL--EGSTPVPVFKEPNFTIPEIPGIVQHEILNKRTPFLPKDTAGSGQLW*ISRG 674
            + +VSG TE+ +R WD R+G K  KL+GHTDNIRS+LL+     CLS SSD  +RLWD+G+QRCI  +  +HTDSVW LA+  +FSH +SGGRD  ++LTDL T +S L+     PIL++  +  D +IWV+TT S++  +       +       +   G++S                               +R ++S   E S  + V  EP   I    GI+++++LN R   L KD   + QLW I++G
Sbjct:  575 SFVVSGSTERAIRGWDVRSGQKIFKLKGHTDNIRSILLNDNSTRCLSASSDGTVRLWDIGEQRCIQVFDDLHTDSVWTLATNDSFSHFFSGGRDGMIFLTDLKTHQSRLVSRENEPILKILNNQDDQSIWVSTTSSTIKNYGLSNFYDKNQSIDNNTTNCGSISSEILYNNNNNNNNNNNNNNNNNNNNNNNNNNNREKLSTINEDSNGLQV-DEPKIKIQGRAGIIKNQVLNNRRQVLTKDNDNNVQLWDITKG 828          
The following BLAST results are available for this feature:
BLAST of DY306124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
WDR48_XENTR6.655e-4644.64WD repeat-containing protein 48 OS=Xenopus tropica... [more]
WDR48_CHICK2.141e-4442.67WD repeat-containing protein 48 OS=Gallus gallus G... [more]
WDR48_DANRE2.796e-4442.24WD repeat-containing protein 48 OS=Danio rerio GN=... [more]
WDR48_HUMAN4.769e-4442.24WD repeat-containing protein 48 OS=Homo sapiens GN... [more]
WDR48_BOVIN4.769e-4442.24WD repeat-containing protein 48 OS=Bos taurus GN=W... [more]
WDR48_PONAB8.135e-4442.24WD repeat-containing protein 48 OS=Pongo abelii GN... [more]
WDR48_MOUSE8.135e-4442.24WD repeat-containing protein 48 OS=Mus musculus GN... [more]
WDR48_MACFA4.037e-4342.92WD repeat-containing protein 48 OS=Macaca fascicul... [more]
WDR48_BRUMA5.107e-3838.52WD repeat-containing protein 48 homolog OS=Brugia ... [more]
WDR48_DICDI6.670e-3836.86WD repeat-containing protein 48 homolog OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CF07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306124 ID=DY306124; Name=DY306124; organism=Citrus sinensis; type=EST; length=1252bp
GGAATGATAGTGGAAACCTTCTGGTTTCTGGTGGAACTGAGAAGGTTGTA
CGTGTATGGGATCCAAGGACTGGTTCAAAAACTATTAAGCTTAGAGGGCA
TACAGATAATATTCGATCTCTGCTCCTAGATTCTACTGGAAGATATTGCT
TATCAGGATCCTCCGACTCTATGATCAGGTTATGGGATCTTGGTCAACAA
CGATGCATTCACTCCTATGCTGTCCACACTGATTCTGTTTGGGCACTTGC
CAGCACTCCAACATTTAGTCACGTTTACAGTGGTGGGAGAGACCTTTCTT
TATACTTGACAGACTTGGCGACTAGAGAAAGTCTATTGCTTTGCACAGGG
GAACACCCAATTCTGCAATTGGCATTGCATGACGATAATATATGGGTAGC
CACAACAGATTCTTCGGTTCATAGGTGGCCTGCTGAAGGACGCAATCCTC
AAAAGGTCTTTCAGAGAGGTGGCTCATTCATAGCTGGAAATTTGTCTTTT
TCGAGGGCAAGAGTTTCGTTGGAAGGATCTACCCCAGTTCCCGTTTTCAA
AGAACCTAACTTTACCATTCCTGAAATTCCGGGAATTGTGCAGCATGAAA
TCTTAAATAAAAGAACGCCTTTTTTGCCTAAGGACACAGCTGGTTCAGGG
CAACTCTGGTAGATCTCCCGAGGTTGTTGGCATCCCAAATGGCCAAGCGG
CTCCCTTTATGGTTAAGGATTTGGAAANATTCCCGATGGGTTGTTGGATG
GCCCGGGTTTTTTGTGAACCCTAGGCNCATATNAGGNNAACTTCTTTAAA
ATCNNAAATAANCCTATAAANATAGATAAATATTTAGAAAATTTNATACG
AGNAGCCNCGATATAAAAAAATTGATAACCNGCAACAAANNATATAAGAC
CNGATTAGAAGGGGCGATCGNNNATAACAAAAAGAGCAACCTATGTTGAA
NNNTACGGGNCAAATAGTTAAACTTAAATNAAGTTCTGCGNAGACTTGAT
GAAGACNCAATGACCGGGAGTGGGCAGAAAAANNGACCAGATTATAGAGG
GGGATAGAAGGAATATGAATCTGATAATAAGAAGGGAAGAGAGCGNGAAA
ANACGAAGCAGAGTAGTCAACATCGATGGGCACGAAACTGAGGGAGTAAT
ATTCGGCATAGAAGAATCAAAAACGGAAGCGTAACACACATGATAAAAAC
AAGTACAAAAAAANAAACACATTACTCTTAATGAACTAAATAATTATGCT
GC
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