DY306122

Overview
NameDY306122
Unique NameDY306122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.602e-21
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIK 226
            HLQEIA + GIPSY IDS  RIGPGN+I +K +H      ENWLP+  ITIGITSGASTPDK VEEVL K+F ++
Sbjct:  322 HLQEIAIEHGIPSYHIDSADRIGPGNRIEHKPLHQNPTVAENWLPDRPITIGITSGASTPDKVVEEVLNKIFALR 396          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.092e-21
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIK 226
            HLQEI+ +R IPSY IDS  RIGPGN++ +K +H  L  KENWLP G I +GITSGASTPDK V +VL+K+F +K
Sbjct:  323 HLQEISIEREIPSYHIDSADRIGPGNRVEHKPLHRPLEIKENWLPEGPIVVGITSGASTPDKVVSDVLEKIFALK 397          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_ACAM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.732e-21
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEA 238
            HLQEI+ D+ IPSY IDS  RIGPGN++ +K ++ +L   +NWLPNG + IG+TSGASTPDK V ++++K+F IK   A
Sbjct:  331 HLQEISIDKNIPSYHIDSVDRIGPGNRVEHKPLNADLTVTDNWLPNGPLAIGVTSGASTPDKVVSDIVEKIFSIKSASA 409          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP6 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.087e-21
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKR 229
            HLQEIA +R IPS+ ID+ +RIGPGN+I +K +H +L   E WLP G +TIGITSGASTPDK VE+V++++F+++R
Sbjct:  322 HLQEIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDLTTTEPWLPAGPLTIGITSGASTPDKVVEDVIERLFDLQR 397          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_SYNE7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.087e-21
Identity = 45/76 (59.21%), Postives = 62/76 (81.58%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKR 229
            HLQEIA +R IPS+ ID+ +RIGPGN+I +K +H +L   E WLP G +TIGITSGASTPDK VE+V++++F+++R
Sbjct:  322 HLQEIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDLTTTEPWLPAGPLTIGITSGASTPDKVVEDVIERLFDLQR 397          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.950e-21
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEAL 241
            HLQEI+ ++GI SY IDS+KRI PGNKI +K +  ++  KENWLP+G+I +G+TSGASTPDK VE V++++FE K    L
Sbjct:  322 HLQEISIEKGIDSYHIDSDKRILPGNKIEHKPLEKDIETKENWLPDGKIIVGVTSGASTPDKVVEAVIERIFEEKNAGVL 401          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.153e-20
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREE 235
            HLQEIA + GIPS  IDS  RIGPGN++ +K +  +L   E WLP G+IT+G+TSGASTPDK VEEV+KK+  IK  +
Sbjct:  295 HLQEIAVEHGIPSVHIDSGDRIGPGNRVEHKPLGKDLEVLEPWLPAGKITVGVTSGASTPDKVVEEVMKKILAIKEAQ 372          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_NOSP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.499e-19
Identity = 43/79 (54.43%), Postives = 62/79 (78.48%), Query Frame = 2
Query:    5 LQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEAL 241
            LQ+IA +R IPSY ID+ +RI  G+ I ++ ++G+L+  ENWLP+G+I +GITSGASTPDK VE+V++K+F +K   AL
Sbjct:  323 LQQIAFERRIPSYHIDTVERIKSGDSIEHRQLNGQLITTENWLPDGEIVVGITSGASTPDKVVEDVIEKIFAVKATAAL 401          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_MICAN (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Microcystis aeruginosa (strain NIES-843) GN=ispH PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.499e-19
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIK 226
            HLQEIA +R IPSY IDS +RI PGN+I +K +  +L+  +NWL  G+I +G+TSGASTPDK VEEV++K+F  K
Sbjct:  322 HLQEIAIERAIPSYHIDSAERILPGNRIEHKPLGDDLIITDNWLNEGKIVVGVTSGASTPDKVVEEVIEKIFAFK 396          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_ANAVT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.362e-19
Identity = 42/79 (53.16%), Postives = 61/79 (77.22%), Query Frame = 2
Query:    5 LQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEAL 241
            LQ+I+++RG+PSY ID  +RI   N I ++ ++GELV  ENWLP G+I +G+TSGASTPDK VE+V++K+F +K   A+
Sbjct:  323 LQQISQERGLPSYHIDVVERIKSVNSIEHRQLNGELVTTENWLPAGKIVVGVTSGASTPDKVVEDVIEKIFALKATTAV 401          
The following BLAST results are available for this feature:
BLAST of DY306122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_THEEB1.602e-2165.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP42.092e-2162.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ACAM12.732e-2155.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP66.087e-2159.214-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNE76.087e-2159.214-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAA57.950e-2157.504-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY35.153e-2058.974-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NOSP71.499e-1954.434-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_MICAN1.499e-1958.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANAVT4.362e-1953.164-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CF04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306122 ID=DY306122; Name=DY306122; organism=Citrus sinensis; type=EST; length=393bp
ACACCTTCAAGAGATTGCAGAAGACCGTGGAATTCCCTCATACTGGATCG
ATAGTGAGAAGAGAATAGGCCCCGGAAACAAAATAGCATATAAATTGATG
CATGGTGAGCTGGTGGAGAAAGAAAATTGGCTGCCGAACGGCCAGATCAC
AATCGGTATAACATCCGGTGCCTCCACCCCAGATAAGGCTGTTGAAGAGG
TCCTTAAAAAGGTATTCGAGATCAAGCGTGAAGAAGCCTTGCAATTAGCG
TAAACTGAGGTCCAAACATACACATTATCAATAAATTTCGATGTGATTGT
ATCACTAGATATTGTAAAATTATAAACACAGCCCTCTGTCGGGTCTTTTA
TTAGTGCCCATCTAATCTGAAATTTATATTTTTGTGTAAAAAA
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