DY306112

Overview
NameDY306112
Unique NameDY306112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 5.521e-95
Identity = 172/191 (90.05%), Postives = 182/191 (95.29%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 574
            PGLQGGPHNHTITGL+VALKQATT EYKAYQEQV++NC+KFA+TL++ GYELVSGGTENHL+LVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY FD AVKLAVKIK E QGTKLKDFVA  QS+ FQSEI+KLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  327 PGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 3.350e-92
Identity = 167/191 (87.43%), Postives = 180/191 (94.24%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 574
            PGLQGGPHNHTITGL+VALKQATT EYKAYQEQV++N +KFA+TL++ GYELVSGGTENHL+LVNLKNKGIDGS+VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD AVKLAVKIK E +GTKLKDFV   +S+  QSEI+KLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  327 PGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.703e-91
Identity = 169/192 (88.02%), Postives = 181/192 (94.27%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQ-SANFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 574
            PGLQGGPHNHTITGL+VALKQATT EY+AYQEQVL+N SKFAQ L E GYELVSGGT+NHL+LVN+KNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVA FFDAAVK+AVK+K+ETQGTKLKDFVAT + SA  +SEIAKLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  327 PGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 7.722e-89
Identity = 163/192 (84.90%), Postives = 180/192 (93.75%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSAN-FQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 574
            PGLQGGPHNHTITGL+VALKQATT EYKAYQEQVL+N +KFAQTL+E GYELVSGGT+NHL+LVNLK KGIDGSRVEKVLEAVHIA+NKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA +FD AV +A+K+KSE QGTKLKDFV+  +S++  QSEIAKLRH+VEE+AKQFPTIGFEKETMKYKN
Sbjct:  326 PGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.363e-85
Identity = 157/190 (82.63%), Postives = 176/190 (92.63%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANF-QSEIAKLRHDVEEYAKQFPTIGFEKETMKY 568
            PGLQGGPHNHTITGL+VALKQATT EY+AYQEQVL+N SKFA+ L E GY+LVSGGTENHL+LVNLKNKGIDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA +FDAAV LA+K+K+E++GTKLKDFV   Q++++ QSEI+KL+HDVEE+AKQFPTIGFEK TMKY
Sbjct:  327 PGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.391e-51
Identity = 97/182 (53.30%), Postives = 131/182 (71.98%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 544
            PGLQGGPHNH I G++VALKQA T E+K YQ QV+ NC   ++ L E+GY++V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T     LK+F        +Q+ +  LR +VE +A  FP  G
Sbjct:  298 PGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.859e-50
Identity = 97/182 (53.30%), Postives = 129/182 (70.88%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 544
            PGLQGGPHNH I G++VALKQA T E+K YQ QV+ NC   ++ L E+GY++V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T     LK+F        +Q  +  LR  VE +A  FP  G
Sbjct:  298 PGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.142e-50
Identity = 99/184 (53.80%), Postives = 130/184 (70.65%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIGFE 550
            P LQGGPHNH I  ++VALKQA T  ++ Y  Q+L N    A  LLE GY LVSGGT+NHL+LV+L+ KG+DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSRGF+E+DF KV  F D  V + +++KS+T  TKL+DF +   +      ++A LR  VE++A+ FP  GF+
Sbjct:  321 PSLQGGPHNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKT--TKLQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGFD 502          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 3.507e-49
Identity = 99/184 (53.80%), Postives = 131/184 (71.20%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTK--LKDFVATTQSA-NFQSEIAKLRHDVEEYAKQFPTIG 544
            PGLQGGPHNH I G++VALKQA T E++AYQ QV+ NC   A+ L+ +GY +V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA+F    ++L ++I+ +  G K  LK+F+     A   Q  +  LR +VE +A  FP  G
Sbjct:  298 PGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.580e-49
Identity = 98/187 (52.41%), Postives = 130/187 (69.52%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQG------TKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 544
            PG QGGPHNHTI+ L+VALKQA T E+  YQ+QV++N   F   LL+ G+ELVSGGT+NHLLL+NL N GIDG+R+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF E+DF KVA + D AVKL++ +KS+         +KL  F    Q  +    + KL  +V  +   FP  G
Sbjct:  300 PGHQGGPHNHTISALAVALKQAKTPEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQESADAKDVRSKLNSF---KQLCDQSEPVQKLAEEVSSWVGTFPVPG 483          
The following BLAST results are available for this feature:
BLAST of DY306112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYN_FLAPR5.521e-9590.05Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_FLAPR3.350e-9287.43Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_SOLTU3.703e-9188.02Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH7.722e-8984.90Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA1.363e-8582.63Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_HUMAN6.391e-5153.30Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_PONAB1.859e-5053.30Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYM_BOVIN4.142e-5053.80Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_SHEEP3.507e-4953.80Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYM_CANGA4.580e-4952.41Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CE01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306112 ID=DY306112; Name=DY306112; organism=Citrus sinensis; type=EST; length=821bp
GCCTGGACTCCAAGGTGGCCCACACAACCACACAATTACTGGTTTATCAG
TTGCCTTGAAACAGGCCACTACTCAAGAGTATAAAGCCTATCAAGAGCAA
GTTCTGAACAATTGCTCAAAATTTGCACAGACTCTGCTCGAGATGGGCTA
TGAACTTGTTTCTGGTGGAACTGAGAACCATCTATTGTTGGTGAATTTGA
AAAACAAGGGAATTGATGGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTT
CATATTGCAGCCAACAAAAACACTGTTCCTGGGGATGTGTCGGCCATGGT
TCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACTTCTAGGGGATTTG
TTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGATGCTGCTGTGAAG
TTGGCTGTGAAGATCAAGTCTGAGACTCAAGGAACAAAGTTGAAAGATTT
CGTGGCCACAACACAGTCCGCTAACTTCCAATCCGAGATTGCGAAACTTC
GCCATGATGTTGAGGAGTATGCAAAGCAATTCCCCACAATTGGGTTTGAA
AAGGAAACCATGAAGTACAAGAACTGAGAGAAAAACGCCACTGTACTAGA
GTAGCGGAAGCCAGCCTGTATGAGCTTTTATTACACAGAGGCGACGAGGG
ATGACATGTAACTTACGATGATGAGCCATGTATCAACTATCGACCCTGTG
ATTTGGCGCTTTTATGAATACAATATACCGCAAAACCTTGATTTAGAATC
CAATTAATGTTTATAAAGTACTCTGTATTAACTGAGGCTTTCAGGGAGCA
AAATAACCTGCCATAAAACTA
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