DY306111
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 1.236e-75 Identity = 136/223 (60.99%), Postives = 167/223 (74.89%), Query Frame = 1 Query: 1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHEN--------------GRHNPHGTISGRQLGEAAHRLVANSLQHMKVDR 627 DMNGKR+SWQGIAKLPFIDE RLL+ V ++E TL +EE RRNS M DMLF+ SH L+ +++LD HC+QL +ERV+ K ++ P+LS DGMNGY++PC+G+ HPPVFRSP+ MEDI+ NQV+C IY+LPDAH+H+TRPP GVIFPKK V + DLKP P LWHED+GRRP N GR NP G++SGR LG AAHRLV+NSLQ M DR Sbjct: 659 DMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLS---DGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQ-MGTDR 877
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 7.552e-49 Identity = 101/209 (48.33%), Postives = 135/209 (64.59%), Query Frame = 1 Query: 1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD--AHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPH-----ENGRHNPHGTISGRQLGEAAHRLVANSL 606 DMNGKRYSWQGI+KLPF++E RLL+ ++E +L EE RRNS + DMLFV+ SHPL I +L+ L +ER + E+++P L SDGMNGYI+ C GD P F S V MED++ NQV+CAIYKLP+ +T + PKK + L DLK +LWHED +R + R+NP G+ISG +LG+A+HRLV ++ Sbjct: 651 DMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEEIRRNSALFDMLFVVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGL---SDGMNGYIASCGGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKKTISLVDLKSGGLLWHEDGDKRRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTI 856
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 3.639e-35 Identity = 92/222 (41.44%), Postives = 121/222 (54.50%), Query Frame = 1 Query: 1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHED-SGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMK---------VDRNGY 636 DMNGKR++WQGIAKLPFI+E LL +K+E TL EE +RNS+M D+L+V +HPL I + + E + ++P S GMNG++ + SPV + I N+ L Y P H H++ PP G I P KI+ D+KP P LWHED S RR R G I+G LGEAAHRL+ N+L +MK +D NGY Sbjct: 565 DMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHEC--LPWMIDPN---SSQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTL-NMKSSTGAASGLIDPNGY 780
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: CR2_HORVU (Cold-regulated protein 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 9.955e-17 Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 1 Query: 160 SHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYK 393 +HP+S IY+L L K+R E+KE+L+P S GMNGYIS C GDP P VFRSPV +EDIM NQV+C+IYK Sbjct: 2 AHPISPYIYSLSSKFGHLADKDRNEIKEQLDPS---ASGGMNGYISLCGGDPSPLVFRSPVDGLEDIMDNQVICSIYK 76
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_USTMA (5'-3' exoribonuclease 2 OS=Ustilago maydis GN=RAT1 PE=3 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 4.624e-14 Identity = 74/227 (32.60%), Postives = 106/227 (46.70%), Query Frame = 1 Query: 1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERV----EVKER--LNPELSMCSDGMNGYISPCAGDPHPPVFRSPVAS--MEDIMGNQVLCAIYKLPDAH-KHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMKVDRNGYGDRMHG 654 DMNGK+ +WQG+A LPFIDE RLLD +K+ L+E+E RRN + LFV L D C+++ K+R E +R +NP L S G+ G++ P F SP+ S + DI ++ + +Y P+ H + G+ PK+I L A + W + P GR G G G HR +N QH + NGY +G Sbjct: 789 DMNGKKMAWQGVALLPFIDEKRLLDALKERYPLLSEDEVRRNGFGNNTLFVGNESRL------YDFLCEEIYAKKRTTDDGETPKRVAVNPAL---SGGITGFVKPDPVCVPGSTFNSPLTSQALHDIHNDRSISVLYDFPEQKTPHRSVLLKGLKPPKRI-----LSAAEIDWVKRGS--PDNRGRGRGRGAHHG-GAGRDFHR-SSNGQQH---NNNGYAGGENG 994
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_CAEBR (5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2 PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 1.345e-13 Identity = 70/227 (30.84%), Postives = 106/227 (46.70%), Query Frame = 1 Query: 1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASME--DIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPA-PVLWHEDSGRRPHENGRHNPHGTISGRQ------LGEAAHRLVANSLQHMKVDRNGYGDRMHG 654 D+NGK+Y+WQG+A LPF+DE RLL+ +K + TL +EE RN+ + +F+ +H + + + K + V+ L+P L G Y S P F SPV+ E D+ N +C +Y+ P+ PA +FP V+L+ K A L ED R +GR NP TI + L + R + + ++ DR G D G Sbjct: 663 DLNGKKYAWQGVALLPFVDEQRLLETLKSVYPTLTDEEKYRNTRGPNRIFIGRNH----KSFAFFQQVAESKSNDLVD----LDPSLLNGVSGKISYDSTATAPGLP--FPSPVSHEECQDLPTNCGICVLYEDPEY-------PANYVFP--AVRLDGAKEAEKTLRPEDWNER--RDGRFNP--TIGFNRNAPRGGLDLSGQRHINHHVRGAMYDRQGGNDNYRG 866
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_SCHPO (5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe GN=dhp1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 8.721e-13 Identity = 61/192 (31.77%), Postives = 93/192 (48.44%), Query Frame = 1 Query: 1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDG---MNGYISPCAGDPHPPVFRSPVASME--DIMGNQVLCAIYKLPDAH-KHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHEN---GRHNPHG 549 D+NGK++ WQG+A LPFIDE RLL+ V KI L EEE++RN + +LF+ HP+ E KQL K+R +L+ +++ G N + P P S A + I NQ + ++++P +H H + GV P +++ ED+ S RR + N G H +G Sbjct: 710 DLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNEDGSTLLFISEHHPM------FSELVKQLYSKKRQGKPLKLSGKMAHGLFGKVNTNDSVIPNVSVQCPIDVTSADALQKYGSIDDNQSISLVFEVPKSHFVHKSMLLRGVKMPNRVLTPEDINQVRA-ERSFSSRRNNGNSYRGGHQSYG 894
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_CHICK (5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 4.328e-12 Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 1 Query: 1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHP-PVFRSPVASMEDIMGNQVLCAIYKLP 399 D+NGK+Y+WQG+A LPF+DE RL ++++ L EE RRNS+ D+LFV HPL D +Q K K V + PEL G+ G ++P P SPV + D+ N + +K P Sbjct: 635 DLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVLFVGKHHPL------CDFIVEQYKSKNTEPVD--MPPELCY---GIQGKLTPNENAVLPDKTVESPVPMLRDLTQNSAVSISFKDP 757
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_HUMAN (5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 9.642e-12 Identity = 58/159 (36.48%), Postives = 78/159 (49.06%), Query Frame = 1 Query: 1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHP-PVFRSPVASMEDIMGNQVLCAIYKLPD-AHKHV--------TRPPAGVIFP 447 D+NGK+Y+WQG+A LPF+DE RL ++++ L EE RRNS+ D+LFV HPL I L Q E VEV PEL G+ G S P + SPV + D+ N V+ +K P A ++ R PA V+ P Sbjct: 636 DLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVEVP----PEL---CHGIQGKFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAVLKP 783
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_PONAB (5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.148e-11 Identity = 57/159 (35.85%), Postives = 78/159 (49.06%), Query Frame = 1 Query: 1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHP-PVFRSPVASMEDIMGNQVLCAIYKLPD-AHKHV--------TRPPAGVIFP 447 D+NGK+Y+WQG+A LPF+DE RL ++++ L EE RRNS+ D+LFV HPL I L Q E V+V PEL G+ G S P + SPV + D+ N V+ +K P A ++ R PA V+ P Sbjct: 636 DLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVDVP----PEL---CHGIQGKFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAVLKP 783 The following BLAST results are available for this feature:
BLAST of DY306111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >DY306111 ID=DY306111; Name=DY306111; organism=Citrus sinensis; type=EST; length=1154bpback to top |