DY306111

Overview
NameDY306111
Unique NameDY306111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1154
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.236e-75
Identity = 136/223 (60.99%), Postives = 167/223 (74.89%), Query Frame = 1
Query:    1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHEN--------------GRHNPHGTISGRQLGEAAHRLVANSLQHMKVDR 627
            DMNGKR+SWQGIAKLPFIDE RLL+ V ++E TL +EE RRNS M DMLF+  SH L+  +++LD HC+QL  +ERV+ K ++ P+LS   DGMNGY++PC+G+ HPPVFRSP+  MEDI+ NQV+C IY+LPDAH+H+TRPP GVIFPKK V + DLKP P LWHED+GRRP  N              GR NP G++SGR LG AAHRLV+NSLQ M  DR
Sbjct:  659 DMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLS---DGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQ-MGTDR 877          
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 7.552e-49
Identity = 101/209 (48.33%), Postives = 135/209 (64.59%), Query Frame = 1
Query:    1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD--AHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPH-----ENGRHNPHGTISGRQLGEAAHRLVANSL 606
            DMNGKRYSWQGI+KLPF++E RLL+   ++E +L  EE RRNS + DMLFV+ SHPL   I +L+     L  +ER  + E+++P L   SDGMNGYI+ C GD  P  F S V  MED++ NQV+CAIYKLP+      +T     +  PKK + L DLK   +LWHED  +R       +  R+NP G+ISG +LG+A+HRLV  ++
Sbjct:  651 DMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEEIRRNSALFDMLFVVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGL---SDGMNGYIASCGGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKKTISLVDLKSGGLLWHEDGDKRRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTI 856          
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.639e-35
Identity = 92/222 (41.44%), Postives = 121/222 (54.50%), Query Frame = 1
Query:    1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHED-SGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMK---------VDRNGY 636
            DMNGKR++WQGIAKLPFI+E  LL   +K+E TL  EE +RNS+M D+L+V  +HPL   I       + +   E   +   ++P     S GMNG++     +       SPV  +  I  N+ L   Y  P  H H++ PP G I P KI+   D+KP P LWHED S RR     R    G I+G  LGEAAHRL+ N+L +MK         +D NGY
Sbjct:  565 DMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHEC--LPWMIDPN---SSQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTL-NMKSSTGAASGLIDPNGY 780          
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: CR2_HORVU (Cold-regulated protein 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 9.955e-17
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  160 SHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYK 393
            +HP+S  IY+L      L  K+R E+KE+L+P     S GMNGYIS C GDP P VFRSPV  +EDIM NQV+C+IYK
Sbjct:    2 AHPISPYIYSLSSKFGHLADKDRNEIKEQLDPS---ASGGMNGYISLCGGDPSPLVFRSPVDGLEDIMDNQVICSIYK 76          
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_USTMA (5'-3' exoribonuclease 2 OS=Ustilago maydis GN=RAT1 PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 4.624e-14
Identity = 74/227 (32.60%), Postives = 106/227 (46.70%), Query Frame = 1
Query:    1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERV----EVKER--LNPELSMCSDGMNGYISPCAGDPHPPVFRSPVAS--MEDIMGNQVLCAIYKLPDAH-KHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMKVDRNGYGDRMHG 654
            DMNGK+ +WQG+A LPFIDE RLLD +K+    L+E+E RRN    + LFV     L       D  C+++  K+R     E  +R  +NP L   S G+ G++ P         F SP+ S  + DI  ++ +  +Y  P+    H +    G+  PK+I     L  A + W +     P   GR    G   G   G   HR  +N  QH   + NGY    +G
Sbjct:  789 DMNGKKMAWQGVALLPFIDEKRLLDALKERYPLLSEDEVRRNGFGNNTLFVGNESRL------YDFLCEEIYAKKRTTDDGETPKRVAVNPAL---SGGITGFVKPDPVCVPGSTFNSPLTSQALHDIHNDRSISVLYDFPEQKTPHRSVLLKGLKPPKRI-----LSAAEIDWVKRGS--PDNRGRGRGRGAHHG-GAGRDFHR-SSNGQQH---NNNGYAGGENG 994          
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_CAEBR (5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.345e-13
Identity = 70/227 (30.84%), Postives = 106/227 (46.70%), Query Frame = 1
Query:    1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASME--DIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPA-PVLWHEDSGRRPHENGRHNPHGTISGRQ------LGEAAHRLVANSLQHMKVDRNGYGDRMHG 654
            D+NGK+Y+WQG+A LPF+DE RLL+ +K +  TL +EE  RN+   + +F+  +H      +   +   + K  + V+    L+P L     G   Y S       P  F SPV+  E  D+  N  +C +Y+ P+        PA  +FP   V+L+  K A   L  ED   R   +GR NP  TI   +      L  +  R + + ++    DR G  D   G
Sbjct:  663 DLNGKKYAWQGVALLPFVDEQRLLETLKSVYPTLTDEEKYRNTRGPNRIFIGRNH----KSFAFFQQVAESKSNDLVD----LDPSLLNGVSGKISYDSTATAPGLP--FPSPVSHEECQDLPTNCGICVLYEDPEY-------PANYVFP--AVRLDGAKEAEKTLRPEDWNER--RDGRFNP--TIGFNRNAPRGGLDLSGQRHINHHVRGAMYDRQGGNDNYRG 866          
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_SCHPO (5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe GN=dhp1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 8.721e-13
Identity = 61/192 (31.77%), Postives = 93/192 (48.44%), Query Frame = 1
Query:    1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDG---MNGYISPCAGDPHPPVFRSPVASME--DIMGNQVLCAIYKLPDAH-KHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHEN---GRHNPHG 549
            D+NGK++ WQG+A LPFIDE RLL+ V KI   L EEE++RN   + +LF+   HP+        E  KQL  K+R     +L+ +++    G    N  + P      P    S  A  +   I  NQ +  ++++P +H  H +    GV  P +++  ED+          S RR + N   G H  +G
Sbjct:  710 DLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNEDGSTLLFISEHHPM------FSELVKQLYSKKRQGKPLKLSGKMAHGLFGKVNTNDSVIPNVSVQCPIDVTSADALQKYGSIDDNQSISLVFEVPKSHFVHKSMLLRGVKMPNRVLTPEDINQVRA-ERSFSSRRNNGNSYRGGHQSYG 894          
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_CHICK (5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.328e-12
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 1
Query:    1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHP-PVFRSPVASMEDIMGNQVLCAIYKLP 399
            D+NGK+Y+WQG+A LPF+DE RL   ++++   L  EE RRNS+  D+LFV   HPL       D   +Q K K    V   + PEL     G+ G ++P      P     SPV  + D+  N  +   +K P
Sbjct:  635 DLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVLFVGKHHPL------CDFIVEQYKSKNTEPVD--MPPELCY---GIQGKLTPNENAVLPDKTVESPVPMLRDLTQNSAVSISFKDP 757          
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_HUMAN (5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.642e-12
Identity = 58/159 (36.48%), Postives = 78/159 (49.06%), Query Frame = 1
Query:    1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHP-PVFRSPVASMEDIMGNQVLCAIYKLPD-AHKHV--------TRPPAGVIFP 447
            D+NGK+Y+WQG+A LPF+DE RL   ++++   L  EE RRNS+  D+LFV   HPL   I  L     Q    E VEV     PEL     G+ G  S       P  +  SPV  + D+  N V+   +K P  A  ++         R PA V+ P
Sbjct:  636 DLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVEVP----PEL---CHGIQGKFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAVLKP 783          
BLAST of DY306111 vs. ExPASy Swiss-Prot
Match: XRN2_PONAB (5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.148e-11
Identity = 57/159 (35.85%), Postives = 78/159 (49.06%), Query Frame = 1
Query:    1 DMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLNEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSMCSDGMNGYISPCAGDPHP-PVFRSPVASMEDIMGNQVLCAIYKLPD-AHKHV--------TRPPAGVIFP 447
            D+NGK+Y+WQG+A LPF+DE RL   ++++   L  EE RRNS+  D+LFV   HPL   I  L     Q    E V+V     PEL     G+ G  S       P  +  SPV  + D+  N V+   +K P  A  ++         R PA V+ P
Sbjct:  636 DLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVDVP----PEL---CHGIQGKFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAVLKP 783          
The following BLAST results are available for this feature:
BLAST of DY306111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
XRN3_ARATH1.236e-7560.995'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN... [more]
XRN2_ARATH7.552e-4948.335'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN... [more]
XRN4_ARATH3.639e-3541.445'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN... [more]
CR2_HORVU9.955e-1756.41Cold-regulated protein 2 (Fragment) OS=Hordeum vul... [more]
XRN2_USTMA4.624e-1432.605'-3' exoribonuclease 2 OS=Ustilago maydis GN=RAT1... [more]
XRN2_CAEBR1.345e-1330.845'-3' exoribonuclease 2 homolog OS=Caenorhabditis ... [more]
XRN2_SCHPO8.721e-1331.775'-3' exoribonuclease 2 OS=Schizosaccharomyces pom... [more]
XRN2_CHICK4.328e-1236.575'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 P... [more]
XRN2_HUMAN9.642e-1236.485'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE... [more]
XRN2_PONAB2.148e-1135.855'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM3CD11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306111 ID=DY306111; Name=DY306111; organism=Citrus sinensis; type=EST; length=1154bp
GACATGAATGGAAAGAGGTACTCTTGGCAGGGTATTGCAAAGCTGCCTTT
CATTGATGAAGCTCGTCTTCTTGACGAGGTCAAGAAAATTGAGCATACTT
TAAACGAGGAGGAAGCTCGAAGGAACAGTATCATGGCTGATATGCTTTTT
GTTCTCCTGTCTCATCCGCTCTCTGCAAGCATATATACACTTGATGAACA
TTGTAAACAGTTGAAAATCAAAGAGCGAGTTGAAGTTAAGGAGCGTCTCA
ATCCCGAGTTAAGTATGTGCAGCGATGGGATGAACGGTTACATTTCCCCT
TGTGCTGGCGATCCTCATCCCCCTGTATTTAGATCTCCTGTCGCAAGCAT
GGAAGATATCATGGGCAACCAAGTCTTATGTGCTATATACAAACTTCCAG
ATGCACATAAGCACGTTACCAGGCCTCCTGCCGGAGTTATATTTCCAAAA
AAGATAGTGCAATTGGAGGATCTGAAACCTGCACCTGTATTGTGGCATGA
AGATTCTGGAAGGAGGCCTCATGAAAATGGAAGACATAATCCCCATGGAA
CTATTTCTGGCCGTCAGCTCGGGGAGGCAGCGCACAGACTAGTTGCTAAT
AGTTTACAGCACATGAAAGTGGATCGTAATGGGTATGGTGATCGTATGCA
TGGTTCACCGCTACCTTATGCTGCGGCCCCGTATGTCCCTCCAGTTCCTT
CCTATCAAGAATATGGGGTTTATGATCAAGGATATAATAGATTCTCGCAA
CCAAGAACAGATAGCTATCCTGCAGGGCATTCCCAATCGTCTATTTCTGC
TGCACAACCTCCCTAATGATGGTGGGTATAGTCAACACTATGCTTCCAAT
ACTTCTCAACATCCTAACAGAAAAAATCTCCTCAGTAAGATAAAAATTCC
AGTGGGAAACATCCCACCCCTTTGTACAACCCCTCAGGGAATCATCCAAA
TGGAAGAACCAGGGATCCCCCCCAAACCTTTGGGCCCCAAAATCAAGGGG
GGGCTAAATTTTAAACCTCCCCCAGGGGGGGTTACGGTGGGGTACCCAAC
CCCCTGCGGGCTGGTGAACTTTAAATCCCAGGGGGGGGGGTGGGCCCAAC
CAAAAACCGGGCCCTAAAAGGGGGTAAGGGACAAGAGGGACAAACAACTC
TCCA
back to top