DY306110

Overview
NameDY306110
Unique NameDY306110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1233
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 3.272e-45
Identity = 123/283 (43.46%), Postives = 151/283 (53.36%), Query Frame = 1
Query:  100 SSSTASVLKPLSSMADSTS--LLSPPSIFARNPYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTIHF--SSFTTFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPRGTQP*RAPRVFEPVLESMWATCHGEVKNARLNQFLISKGKV 936
            SS   S LKPL+ MADS+S  + S PSI +      I      +                      H   S F +FVAQTSDWA  EE  + +                       D +EG++S+  E EG+ +     ER                    +AKLFVGNL YDV+S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AVE F+RYD +G+LLTVNKAAPRG++P RAPRV+EP           +V N RL Q     GKV
Sbjct:    3 SSIVTSSLKPLA-MADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSE------------EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270          

HSP 2 Score: 78.9518 bits (193), Expect = 6.655e-14
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813
            +++VGNLP+DVD+ +L  LF + G V  A V+Y+RET RSRGFGFVTMS V+E  +A+      + +G+ + VN A  R
Sbjct:  245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323          
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 7.061e-40
Identity = 82/122 (67.21%), Postives = 97/122 (79.51%), Query Frame = 1
Query:  571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPRGTQP*RAPRVFEPVLESMWATCHGEVKNARLNQFLISKGKV 936
            DAKLFVGNLPYD+DSE LA LF++AG VEIAEVIYNRETDRSRGFGFVTMSTVEEA+KAVE++ +YD +G+LLTVNKAAPRG++P RAPR F+P           ++ +ARL Q     GKV
Sbjct:   96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKV 217          

HSP 2 Score: 72.0182 bits (175), Expect = 8.135e-12
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813
            +++VGN+P+D+D  +L  +F + G V  A V+++RE+ RSRGFGFVTMS+  E  +A+        DG+ + VN A  R
Sbjct:  192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270          
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.504e-39
Identity = 122/298 (40.94%), Postives = 154/298 (51.68%), Query Frame = 1
Query:   97 MSSSTASVLKPLSSMADSTSLLSPPSIFARN--------PYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTIHFS-SFTTFVA----QTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA-----GERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPRGTQP*RAPRVFEPVLESMWATCHGEVKNARLNQFLISKGKV 936
            MS +T  ++KP SSMA ++ L+S P +FA          PY S   +P  +                     +H S +++  +     +TS  A QEE+  NT I                   G  +  G+L ++ EP GE+T  E      G+                     DAKLFVGNLPYDVDSE LA LFE+AG VEIAEVIYNR+TD+SRGFGFVTMSTVEEAEKAVEM++RYD +G+LLTVNKAA RG +P R PR FE             + +ARL Q     GKV
Sbjct:    1 MSCATKPIIKP-SSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKL---------------------LHLSCTYSPCILSPKKKTSVSALQEEE--NTLIL-----------------DGQGQESGDLFNF-EPSGEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKV 256          

HSP 2 Score: 71.633 bits (174), Expect = 1.062e-11
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813
            +++VGN+P+ +D  +L  LF + G V  A V+Y+RET RSRGFGFVTM++  E   A+        DG+ + VN A  R
Sbjct:  231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309          
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.626e-36
Identity = 101/210 (48.10%), Postives = 119/210 (56.67%), Query Frame = 1
Query:  316 VAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPE--GEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPRGTQP*RAPR-VFEPVLESMWATCHGEVKNARLNQFLISKGKV 936
            VAQTS+W  ++E   N  +                   G  + EG +S WG      ++  VE G+                     +AKLFVGNLPYDVDSEKLA +F+ AG VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE+ + YD DG+ LTVNKAAPRG+ P RAPR  FEP           +V  +RL Q     GKV
Sbjct:    2 VAQTSEW--EQEGSTNAVLE------------------GESDPEGAVS-WGSETQVSDEGGVEGGQ--------------GFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS-PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKV 175          

HSP 2 Score: 73.9442 bits (180), Expect = 2.141e-12
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813
            +++VGNLP+DVD+ +L  LF + G V  A V+ +RET RSRGFGFVTMS+  E   A+        DG+ + VN A  R
Sbjct:  150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228          
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.198e-23
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:  571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAP 810
            D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMS+V E E A + F+ Y+ DG+ L VN   P
Sbjct:   90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP 169          

HSP 2 Score: 30.8018 bits (68), Expect = 1.198e-23
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  849 AGFRIYVGNLPWGSEKCSSKPIFN*QG 929
            +G R+YVGNL WG +  + + +F+ QG
Sbjct:  202 SGNRVYVGNLSWGVDDMALESLFSEQG 228          
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.825e-22
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAP 810
            D K+FVGNLP+  DS  LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E A + F+ Y+ DG+ L VN   P
Sbjct:   86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP 165          

HSP 2 Score: 29.261 bits (64), Expect = 2.825e-22
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  858 RIYVGNLPWGSEKCSSKPIFN*QG 929
            R+YVGNL WG ++ + + +F+ QG
Sbjct:  189 RVYVGNLAWGVDQDALETLFSEQG 212          

HSP 3 Score: 70.8626 bits (172), Expect = 1.812e-11
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813
            +++VGNL + VD + L  LF + G V  A+V+Y+R++ RSRGFGFVT S+ EE   A+E     D +G+ + V+ A  R
Sbjct:  189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267          
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.922e-21
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:  571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAP 810
            D K+FVGNL +  DS  LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E A + F+ Y+ DG+ L VN   P
Sbjct:   86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP 165          

HSP 2 Score: 29.261 bits (64), Expect = 3.922e-21
Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  858 RIYVGNLPWGSEKCSSKPIFN*QG 929
            R+YVGNL WG ++ + + +F+ QG
Sbjct:  195 RVYVGNLAWGVDQDALETLFSEQG 218          

HSP 3 Score: 70.8626 bits (172), Expect = 1.812e-11
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813
            +++VGNL + VD + L  LF + G V  A+V+Y+R++ RSRGFGFVT S+ EE   A+E     D +G+ + V+ A  R
Sbjct:  195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273          
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.361e-19
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVN 798
            D KLFVGNLP+ VDS  LA LFE+AG VE+ EVIY++ T RSRGFGFVTMST EE E A + F+ Y+ DG+ + VN
Sbjct:   86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161          
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.084e-19
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVN 798
            D KLFVGNLP+ VDS  LA LFE+AG VEI EVIY++ + RSRGFGFVTMST EE E A + F+ Y+ DG+ + VN
Sbjct:   87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 162          
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 6.871e-19
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAP 810
            D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMST  E E A + F+ Y+ +G+ L VN   P
Sbjct:   98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177          

HSP 2 Score: 71.633 bits (174), Expect = 1.062e-11
Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813
            +L+VGNL + VD   L  LF + G V  A VIY+R++ RS+GFGFVT+S+ +E +KA+   +  D DG+ + V++A  R
Sbjct:  258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336          
The following BLAST results are available for this feature:
BLAST of DY306110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ROC3_ARATH3.272e-4543.4631 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC3_NICSY7.061e-4067.2128 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY3.504e-3940.9431 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL3.626e-3648.1028 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC1_ARATH1.198e-2361.25Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC1_NICSY2.825e-2258.7529 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL3.922e-2157.5030 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY2.361e-1963.1629 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL3.084e-1963.1631 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_ARATH6.871e-1958.7529 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CD09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306110 ID=DY306110; Name=DY306110; organism=Citrus sinensis; type=EST; length=1233bp
GGCTAAACCTCTCCTCTCCCAGTCCCTCTCTCACCATTCTACCCCTTATC
CTTAGAGCTCTCCTCTGAAGTCTAAACCCTTGTCCTCTCTGTGAAAATGT
CTTCTTCAACAGCATCTGTATTGAAACCCTTATCATCGATGGCGGACTCT
ACTTCTCTACTTTCGCCGCCCTCTATCTTCGCCCGAAACCCATATTTCTC
TATCCACCCCAGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCT
TATCTTCGAAAGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCT
TCATTCACGACTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGA
AGACAAAGACAACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATG
GGGAAGAAGAACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGG
AATTTATCTGATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGC
TGGTGAAAGGCAGGAGGAGAGTGGTGAAGAGGGCGTTTTTGAGGAAGAGG
AATTTGTGGAACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCC
TATGATGTTGATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAAC
TGTCGAGATTGCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTG
GCTTTGGGTTCGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTG
GAAATGTTTCACAGATATGACAAAGATGGAAAGCTTTTGACGGTAAATAA
AGCTGCTCCCAGAGGAACACAGCCTTGACGCGCCCCTCGTGTGTTTGAGC
CGGTTTTAGAATCTATGTGGGCAACCTGCCATGGGGAAGTGAAAAATGCT
CGTCTAAACCAATTTTTAATTAGCAAGGGTAAGGTGGGTAAATGCCCCGG
GTTGTTTAGAAAAGGGAAAATGGGACTTTTCCCAGGTTTTTGGCCTTTTT
TACAATTTCTTAAGGGAAACTGAATTTAAAGGAACCCCATTTCTGGCCTT
TTTGACGGAAAAAAATCCCTGGGAAGGGAAAAAAAAAATCCAAAAAAAAA
TGTTTGAAAAAAGAAAAAAACAAAAAAAACACCCATTTTTCTTTTTTTTA
CACCCAAAAAAAGGAGAACGTTGTCAAAAAAAAAATTTGCAGGGCGGGGG
GCCCCGCGAGGGAGGGGGGGGGGGGGGGGGCCC
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