DY306110
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 3.272e-45 Identity = 123/283 (43.46%), Postives = 151/283 (53.36%), Query Frame = 1 Query: 100 SSSTASVLKPLSSMADSTS--LLSPPSIFARNPYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTIHF--SSFTTFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPRGTQP*RAPRVFEPVLESMWATCHGEVKNARLNQFLISKGKV 936 SS S LKPL+ MADS+S + S PSI + I + H S F +FVAQTSDWA EE + + D +EG++S+ E EG+ + ER +AKLFVGNL YDV+S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AVE F+RYD +G+LLTVNKAAPRG++P RAPRV+EP +V N RL Q GKV Sbjct: 3 SSIVTSSLKPLA-MADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSE------------EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270 HSP 2 Score: 78.9518 bits (193), Expect = 6.655e-14 Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813 +++VGNLP+DVD+ +L LF + G V A V+Y+RET RSRGFGFVTMS V+E +A+ + +G+ + VN A R Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 7.061e-40 Identity = 82/122 (67.21%), Postives = 97/122 (79.51%), Query Frame = 1 Query: 571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPRGTQP*RAPRVFEPVLESMWATCHGEVKNARLNQFLISKGKV 936 DAKLFVGNLPYD+DSE LA LF++AG VEIAEVIYNRETDRSRGFGFVTMSTVEEA+KAVE++ +YD +G+LLTVNKAAPRG++P RAPR F+P ++ +ARL Q GKV Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKV 217 HSP 2 Score: 72.0182 bits (175), Expect = 8.135e-12 Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813 +++VGN+P+D+D +L +F + G V A V+++RE+ RSRGFGFVTMS+ E +A+ DG+ + VN A R Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 3.504e-39 Identity = 122/298 (40.94%), Postives = 154/298 (51.68%), Query Frame = 1 Query: 97 MSSSTASVLKPLSSMADSTSLLSPPSIFARN--------PYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTIHFS-SFTTFVA----QTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA-----GERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPRGTQP*RAPRVFEPVLESMWATCHGEVKNARLNQFLISKGKV 936 MS +T ++KP SSMA ++ L+S P +FA PY S +P + +H S +++ + +TS A QEE+ NT I G + G+L ++ EP GE+T E G+ DAKLFVGNLPYDVDSE LA LFE+AG VEIAEVIYNR+TD+SRGFGFVTMSTVEEAEKAVEM++RYD +G+LLTVNKAA RG +P R PR FE + +ARL Q GKV Sbjct: 1 MSCATKPIIKP-SSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKL---------------------LHLSCTYSPCILSPKKKTSVSALQEEE--NTLIL-----------------DGQGQESGDLFNF-EPSGEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKV 256 HSP 2 Score: 71.633 bits (174), Expect = 1.062e-11 Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813 +++VGN+P+ +D +L LF + G V A V+Y+RET RSRGFGFVTM++ E A+ DG+ + VN A R Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 3.626e-36 Identity = 101/210 (48.10%), Postives = 119/210 (56.67%), Query Frame = 1 Query: 316 VAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPE--GEDTVVEAGERQXXXXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPRGTQP*RAPR-VFEPVLESMWATCHGEVKNARLNQFLISKGKV 936 VAQTS+W ++E N + G + EG +S WG ++ VE G+ +AKLFVGNLPYDVDSEKLA +F+ AG VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE+ + YD DG+ LTVNKAAPRG+ P RAPR FEP +V +RL Q GKV Sbjct: 2 VAQTSEW--EQEGSTNAVLE------------------GESDPEGAVS-WGSETQVSDEGGVEGGQ--------------GFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS-PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKV 175 HSP 2 Score: 73.9442 bits (180), Expect = 2.141e-12 Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813 +++VGNLP+DVD+ +L LF + G V A V+ +RET RSRGFGFVTMS+ E A+ DG+ + VN A R Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.198e-23 Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1 Query: 571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAP 810 D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMS+V E E A + F+ Y+ DG+ L VN P Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP 169 HSP 2 Score: 30.8018 bits (68), Expect = 1.198e-23 Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 3 Query: 849 AGFRIYVGNLPWGSEKCSSKPIFN*QG 929 +G R+YVGNL WG + + + +F+ QG Sbjct: 202 SGNRVYVGNLSWGVDDMALESLFSEQG 228
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.825e-22 Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAP 810 D K+FVGNLP+ DS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E A + F+ Y+ DG+ L VN P Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP 165 HSP 2 Score: 29.261 bits (64), Expect = 2.825e-22 Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3 Query: 858 RIYVGNLPWGSEKCSSKPIFN*QG 929 R+YVGNL WG ++ + + +F+ QG Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQG 212 HSP 3 Score: 70.8626 bits (172), Expect = 1.812e-11 Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813 +++VGNL + VD + L LF + G V A+V+Y+R++ RSRGFGFVT S+ EE A+E D +G+ + V+ A R Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.922e-21 Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1 Query: 571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAP 810 D K+FVGNL + DS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E A + F+ Y+ DG+ L VN P Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP 165 HSP 2 Score: 29.261 bits (64), Expect = 3.922e-21 Identity = 11/24 (45.83%), Postives = 18/24 (75.00%), Query Frame = 3 Query: 858 RIYVGNLPWGSEKCSSKPIFN*QG 929 R+YVGNL WG ++ + + +F+ QG Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQG 218 HSP 3 Score: 70.8626 bits (172), Expect = 1.812e-11 Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1 Query: 577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813 +++VGNL + VD + L LF + G V A+V+Y+R++ RSRGFGFVT S+ EE A+E D +G+ + V+ A R Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.361e-19 Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1 Query: 571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVN 798 D KLFVGNLP+ VDS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMST EE E A + F+ Y+ DG+ + VN Sbjct: 86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 3.084e-19 Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1 Query: 571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVN 798 D KLFVGNLP+ VDS LA LFE+AG VEI EVIY++ + RSRGFGFVTMST EE E A + F+ Y+ DG+ + VN Sbjct: 87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 162
BLAST of DY306110 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 6.871e-19 Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1 Query: 571 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAP 810 D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMST E E A + F+ Y+ +G+ L VN P Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177 HSP 2 Score: 71.633 bits (174), Expect = 1.062e-11 Identity = 35/79 (44.30%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 577 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDKDGKLLTVNKAAPR 813 +L+VGNL + VD L LF + G V A VIY+R++ RS+GFGFVT+S+ +E +KA+ + D DG+ + V++A R Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336 The following BLAST results are available for this feature:
BLAST of DY306110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >DY306110 ID=DY306110; Name=DY306110; organism=Citrus sinensis; type=EST; length=1233bpback to top |