DY306109

Overview
NameDY306109
Unique NameDY306109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1287
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306109 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 427.557 bits (1098), Expect = 8.011e-119
Identity = 212/291 (72.85%), Postives = 241/291 (82.82%), Query Frame = 2
Query:    2 LALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAE---VRREIGKCEPIIEEPATPEQECTEITESDIEDAFY-EDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLTPIDVPREWLWNLPRRMVYFGTSVSSIFQGPSTE 862
            LALP PEE+S+ S+T+P   E  P V I  + LP P + SLA      RE   CEPIIEEPA+P QECTEITESDIEDA+Y EDPDEIPTIKLNIE+F + L+ +M+  MELQE DMSKALVAL+P   SIP PKLKN+SRLRTEHQVYELPDSH LL+GMD+REPDDPSPYLLAIWTPGETANS Q PE +C  K SGK+C ++TC  CNS+RE NSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNE+FADH+SSL PIDVPR+W+W+LPRR VYFGTSV+SIF+G STE
Sbjct: 1657 LALPAPEERSLTSATIPVPPESYPPVAIPMIELPLPLEKSLASGAPSNRE--NCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTSVTSIFRGLSTE 1945          
BLAST of DY306109 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 353.214 bits (905), Expect = 1.920e-96
Identity = 172/268 (64.18%), Postives = 210/268 (78.36%), Query Frame = 2
Query:   86 NPMPLPSPEKSSL---------AEVRREIGKCEPIIEEPATPEQECTEITESDIEDAFYEDPDEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLTPIDVPREWLWNLPRRMVYFGTSVSSIFQGPSTE 862
            NP+PL  PE             +E  +++  CEPIIEEPA+PE E  E++ +DIE+AF+EDP+EIPTI+LN++ FT NL+  M+   ELQ+ +MS ALVAL  + AS+P PKLKN+S+LRTEH+VYELPD HPLL  +++REPDDP  YLLAIWTPGETA+SIQ   S C  + +G LCDE+TCFSCNS++ET SQ VRGT+LIPCRTAMRGSFPLNGTYFQVNEVFADH SSL PI+VPRE +W LPRR VYFGTSV +IF+G STE
Sbjct: 1081 NPLPLHLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSIADIEEAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETASLPMPKLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQANGMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPINVPRELIWELPRRTVYFGTSVPTIFKGLSTE 1348          
BLAST of DY306109 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 1.253e-71
Identity = 159/300 (53.00%), Postives = 185/300 (61.67%), Query Frame = 2
Query:    2 LALPGPEEKSIVSSTMPTMAERNPSVVINPMPLPSPEKSSLAEVRREIGKCEPIIEEPATPEQECTEITESDIED--------AFYEDP----DEIPTIKLNIEEFTVNLQSYMQEKMELQECDMSKALVALNPDAASIPAPKLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGK-LCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLTPIDVPREWLWNLPRRMVYFGTSVSSIFQGPSTE 862
            LALP PEE    S  +     +   VV+N  P     +    E +R    CEPIIEEPA+PE E     E DIED           EDP    D IPTI LN E  T +      + +  +E   S  LV L+  AA+IP  KLK   +LRTEH V+ELPD H +LEG +RRE +D  PYLLAIWTPGET NSIQ P+ RC   ES   LC+E  CF CN  RE  SQTVRGT+LIPCRTAMRG FPLNGTYFQ NEVFADHDSS+ PIDVP E +W+L RR+ Y G+SVSSI +G S E
Sbjct:  975 LALPEPEESDRTSVMIHERRSKRKPVVVNFRPSLFLYQEKEQEAQRS-QNCEPIIEEPASPEPE---YIEHDIEDYPRDKNNVGTSEDPWENKDVIPTIILNKEAGTSH------DLVVNKEAGTSHDLVVLSTYAAAIPRRKLKIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVE 1264          
BLAST of DY306109 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 2.010e-53
Identity = 114/240 (47.50%), Postives = 155/240 (64.58%), Query Frame = 2
Query:  155 EPIIEEPATPEQECTEITESDIEDA----FYEDPDEIPTIKLNIEEFTVNLQSYM--QEKMELQECDMSKALVALNPDAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLEGMDRREPDDPSPYLLAIWTPGETANSIQLPESRCRSKESGKLCDEKTCFSCNSMRETNSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLTPIDVPREWLWNLPRRMVYFGTSVSSIFQ 847
            +P++E P++P  E  E T  DIED      Y+    +P I  +++    +++  +    +M   + ++SKALV   P+ A IP     K+K  +RLRTEH VY LPD+H LL   +RR+ DDPSPYLLAIW PGET++S   P+ +C S +  KLC  K C  C ++RE NS   RGT+LIPCRTAMRG+FPLNGTYFQ NEVFADH++SL PI   RE    L +R +Y G++V+SIF+
Sbjct:  756 KPLVEFPSSPRAEIPEST--DIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSSSFVPPKKKC-SSDGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFK 992          
The following BLAST results are available for this feature:
BLAST of DY306109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DME_ARATH8.011e-11972.85Transcriptional activator DEMETER OS=Arabidopsis t... [more]
ROS1_ARATH1.920e-9664.18Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
DML2_ARATH1.253e-7153.00DEMETER-like protein 2 OS=Arabidopsis thaliana GN=... [more]
DML3_ARATH2.010e-5347.50DEMETER-like protein 3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3CD08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306109 ID=DY306109; Name=DY306109; organism=Citrus sinensis; type=EST; length=1287bp
GCTTGCACTGCCAGGACCAGAGGAGAAGAGTATAGTGAGTTCAACCATGC
CTACTATGGCTGAAAGAAACCCTTCTGTAGTTATCAATCCTATGCCATTA
CCTTCACCTGAGAAAAGCTCACTCGCTGAAGTACGACGTGAAATTGGCAA
GTGTGAACCCATCATTGAAGAACCAGCAACACCAGAACAAGAATGCACAG
AAATAACAGAAAGTGACATTGAGGATGCATTTTATGAGGATCCTGATGAA
ATCCCCACAATAAAACTCAATATTGAAGAATTCACAGTGAATCTACAGAG
CTACATGCAAGAGAAAATGGAACTACAAGAATGTGACATGTCCAAGGCTC
TAGTTGCTTTGAATCCAGATGCTGCTTCTATTCCAGCACCCAAACTGAAG
AACGTGAGTCGGCTACGTACAGAGCACCAAGTGTATGAACTTCCAGATTC
ACATCCTCTACTAGAAGGGATGGATAGACGGGAACCTGATGATCCTAGTC
CATACCTCCTTGCTATATGGACCCCAGGGGAAACTGCCAATTCCATTCAA
CTTCCTGAAAGTAGATGCAGGTCCAAAGAATCTGGTAAATTGTGCGATGA
GAAGACTTGTTTTTCATGCAATAGCATGAGAGAAACTAATTCACAGACTG
TCAGAGGAACTCTTCTGATTCCTTGCAGAACAGCAATGAGAGGAAGCTTT
CCACTCAATGGCACGTACTTTCAAGTTAATGAGGTGTTTGCAGATCATGA
CTCAAGCCTCACCCCCATAGATGTTCCAAGAGAATGGCTATGGAATCTGC
CTAGACGTATGGTTTACTTTGGAACATCTGTATCCTCAATATTCCAAGGG
CCTTCAACGGAGGGGGAATACGTTCTGCCTTTGGGAAAGGATTTGTTTTG
TGGGAAGGGTTTTTGACCCAAAATCAAAAAACCCCCCCCACCTCCTTTTG
GCCAAAATTGCCTTTTCCCGGCAAGTTAAATTTGGTGGAAAGCCAAAAAA
AAAAAAAACAAACCCCATACACCGGGGCATAATGGCAAAAAAAAAATTTG
GCGGGAAAAGGAAAACCCCAAAAAAAAAATTTCCCCCCAAAAACAGGGAA
AAAAAAAAAGTTTTTTTGAAACTTTCCCGGGGGGGGAAGAAAAATGAAAA
TTTCTCCCACCAAAAAACCCCTTTTTGTTTTGTTATTACTTCTCCCATTT
TTTTCTTCTCTTTTTTTTCCCTCAAAAACAAAAAAAAAAGAGGGCCGTCT
TTTTTTCCCCGCCCCCCCCAGGGTTTTTTATTTATTC
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