DY306108

Overview
NameDY306108
Unique NameDY306108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 5.229e-72
Identity = 127/183 (69.40%), Postives = 154/183 (84.15%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 550
            EL HMVATAA IDDRPSCFR+PRGNGIG  LPPN KG PLE+GKGR+L+EG+RVA+LGYGS VQ C+ AA++++   + VTVADARFCKPLD  LIR+LA+ HE+L+TVEEGS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL I
Sbjct:  532 ELCHMVATAAAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAAASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAI 714          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 3.389e-71
Identity = 129/181 (71.27%), Postives = 149/181 (82.32%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 544
            +L +MVATA  IDDRPSCFR+PRGNGIG  LPP NKG P+EIGKGRIL EG+RVA+LGYGS VQ C+ AA ML+ + ++VTVADARFCKPLD  LIR LA  HE+LITVEEGS+GGFGSHV  FL L G+LDG LK R MVLPDRYIDHG+PADQL E+GL   HI+AT L+L+G P+EAL
Sbjct:  536 DLFNMVATAVAIDDRPSCFRYPRGNGIGVALPPGNKGVPIEIGKGRILKEGERVALLGYGSAVQSCLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.862e-71
Identity = 126/181 (69.61%), Postives = 152/181 (83.98%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 544
            EL H+VATAA IDDRPSCFR+PRGNGIG  LP  NKG PLE+GKGRIL+EG+RVA+LGYGS VQ C+ AA++L+S+ + VTVADARFCKPLD  LIR LA  HE+L+TVE+GS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL
Sbjct:  535 ELFHIVATAAAIDDRPSCFRYPRGNGIGVELPAGNKGIPLEVGKGRILVEGERVALLGYGSAVQNCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREAL 715          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.810e-48
Identity = 99/175 (56.57%), Postives = 127/175 (72.57%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 526
            EL HMVATAA  D  P   R+PRG G+G  +P   +G  LEIGKGRI+ EG +VAIL  G+ +++ +LAA  L ++ +S TVADARF KP+D  LIR+LA +HE+LITVEEGS+GGFGS+V HFL  SG+LD  LK+R MVLPD + D  +PA Q +E+GL++RHI  T L  LG
Sbjct:  458 ELKHMVATAAAYDHGPIAVRYPRGEGVGLEMP--ERGQVLEIGKGRIVKEGTKVAILSLGTRLKEALLAAEDLNARGLSTTVADARFAKPIDEALIRRLAQDHEVLITVEEGSIGGFGSYVLHFLAQSGLLDQGLKVRPMVLPDIFQDQDAPAKQYDEAGLNARHIVETALKALG 630          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.001e-47
Identity = 96/181 (53.04%), Postives = 130/181 (71.82%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 544
            +LMH VATA  IDDRPS FR+PRG G+G  L  + +G+ + IGKGR++ EG+RVAIL  G+ + + + AA+ L ++ ++ TV DARF KPLD +LI +LA EHE+LITVEEGSVGGFGSHV H L   G LD  LK+R + LPD +++H +PA Q E+ GL++  I ATVL+ LG  +  +
Sbjct:  464 DLMHAVATAVSIDDRPSAFRYPRGEGVGIEL--SERGSVMPIGKGRVVREGNRVAILSLGTRLAEALKAADELAARGLAPTVVDARFMKPLDEELILRLAREHEVLITVEEGSVGGFGSHVLHLLASKGALDNGLKVRPLALPDVFVEHDAPAIQYEKIGLNASGIVATVLATLGEARSVV 642          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.613e-47
Identity = 95/180 (52.78%), Postives = 127/180 (70.56%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 541
            EL+HMVAT   I+DRPS  R+PRG G G  +P  + G PLEIGKGR++ +G++VA+L +G+ + +C  AA  L +  +S TVADARF KPLD DL+ +LANEHEILIT+EEGS+GGFGSHV   L+  G LDG +K+R+MVLPD ++DH +PA     +GL ++ I   V   LG+   A
Sbjct:  455 ELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--DVGVPLEIGKGRVIRQGNKVALLSFGTRLAECEKAAEELATLGLSTTVADARFMKPLDVDLVIKLANEHEILITIEEGSIGGFGSHVMQTLSDHGKLDGEVKMRAMVLPDVFLDHDTPAAMYAAAGLDAKAIVKKVFEALGKEHAA 632          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_HYPNA (1-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomonas neptunium (strain ATCC 15444) GN=dxs PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.413e-47
Identity = 96/176 (54.55%), Postives = 124/176 (70.45%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 529
            EL  MV T+  IDDRPS  R+PRG G+G V+P   K  PLEIGKGR++ EG  +AIL YG+ +Q+ + AA ML +Q +S TVADARF KPLD +LI +LA EHE+L+T+EEGS GGFGS V   L   G LD  LK+R M LPD + DH +PA   +++GL++RHI+A  +  LGR
Sbjct:  455 ELARMVLTSLEIDDRPSAVRYPRGEGVGVVIPDLLK--PLEIGKGRVVREGTSIAILSYGTRLQEALKAAEMLAAQGLSATVADARFAKPLDNELIERLAREHEVLVTIEEGSRGGFGSFVLEHLANCGGLDAGLKVRVMTLPDVFQDHDTPAAMYDQAGLTARHIAARAIEALGR 628          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.413e-47
Identity = 97/176 (55.11%), Postives = 123/176 (69.89%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 529
            EL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD  LK+R++ LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  456 ELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_BRUSI (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=dxs PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.413e-47
Identity = 97/176 (55.11%), Postives = 123/176 (69.89%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 529
            EL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD  LK+R++ LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  456 ELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGATGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_BRUC2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=dxs PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.413e-47
Identity = 97/176 (55.11%), Postives = 123/176 (69.89%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 529
            EL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGSHV  FL   G+LD  LK+R++ LPD Y DHG P     E+GL    I  TV + L R
Sbjct:  456 ELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGSHVLQFLATDGLLDRGLKVRALTLPDIYQDHGKPDAMYAEAGLDRTGIVRTVFAALHR 629          
The following BLAST results are available for this feature:
BLAST of DY306108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 454
Match NameE-valueIdentityDescription
DXS_ORYSJ5.229e-7269.40Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH3.389e-7171.27Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN9.862e-7169.61Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_RHOCS1.810e-4856.571-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp... [more]
DXS_MAGSA2.001e-4753.041-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_RHOP22.613e-4752.781-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_HYPNA3.413e-4754.551-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomo... [more]
DXS_BRUSU3.413e-4755.111-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUSI3.413e-4755.111-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUC23.413e-4755.111-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CD07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306108 ID=DY306108; Name=DY306108; organism=Citrus sinensis; type=EST; length=846bp
GGAGCTAATGCACATGGTCGCTACAGCAGCAGTTATAGATGACAGGCCCA
GCTGTTTCAGATTTCCAAGGGGCAACGGAATTGGAGCAGTTCTCCCACCT
AATAACAAAGGAACTCCACTTGAGATTGGGAAGGGAAGAATCCTAATGGA
AGGCGATAGAGTGGCAATTTTGGGCTATGGTTCTGTAGTCCAACAATGTG
TGCTAGCTGCGAACATGCTTAAGAGCCAAGACATTTCCGTGACAGTGGCT
GATGCAAGATTTTGCAAACCTTTGGATACAGACCTCATTAGACAGTTGGC
CAATGAGCATGAAATCCTAATTACTGTGGAAGAGGGTTCTGTGGGAGGCT
TTGGCTCTCATGTATGTCACTTTCTAACCTTAAGTGGCATTCTGGATGGA
CCTCTCAAGTTGAGATCAATGGTGCTTCCTGATAGATACATTGACCATGG
ATCACCAGCCGATCAGCTTGAAGAATCAGGGCTCTCCTCAAGGCATATCT
CTGCAACAGTCTTATCTCTCTTAGGGAGGCCAAAAGAAGCCCTTCTGATT
TAAGTAATCATACAAAATCAAACAACATCTTGCCCTTCGGATCCAACTTA
CAATTCCAAGTTGGGGGTGTTATACACTATAAGGTCCAACTCTTAGAATC
TTTACCTTCATATCCCCTGTAACCATGAAGCATTACCGTGGGATTATAAA
TGTAATGGTCAAGCCTTTTGTTGTTTCTGTACATTCACAATTTTTTCTTG
TAATAAAGATACAAGGCATTGATCTTCACTGTAGATTAACTCCCCTGTCT
TCCACCTGTTTTGTTCCAGTTAAGTTAAATTTCTTTCTTAAAAAAA
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