DY306105

Overview
NameDY306105
Unique NameDY306105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1300
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306105 vs. ExPASy Swiss-Prot
Match: Y1689_ARATH (Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.718e-35
Identity = 56/144 (38.89%), Postives = 90/144 (62.50%), Query Frame = 1
Query:  325 LQRKYSLTSFNLLGHTAPAQAATLLVIGPFLDNWLTDKRIYAYDYNIASVIFLILSCTIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMI---WYSNASTKPGGKERRSSLPYTK 747
            +Q+K+ ++S  LL  + P QA TL V GPFLD  LT++ ++A+ Y    V F++LSC I+V  N S F+ IG+ + V++QVLGH+KT LVL  G++   ++  +   +LG+++AV GM+   +Y +  T+    E  + LP  K
Sbjct:  174 IQKKFKVSSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAFKYTSQVVFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL-RDPFDWRNILGILVAVIGMVVYSYYCSIETQQKASETSTQLPQMK 316          

HSP 2 Score: 57.3806 bits (137), Expect = 9.718e-35
Identity = 34/100 (34.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:   14 HLPF--RELLKFVIFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCLLEVVLDKIRYSRDTKLSIAXXXXXXXXXXXXXXSVNARGFIAALIAVWSTSI 307
            H PF  R ++ F I    SI  +N+SL +NSVGFYQ+ KL++IP + LLE +  + ++SR  + S+                +N  G + +L+AV +T +
Sbjct:   67 HKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFRKKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCV 166          
BLAST of DY306105 vs. ExPASy Swiss-Prot
Match: S35E3_BOVIN (Solute carrier family 35 member E3 OS=Bos taurus GN=SLC35E3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.299e-11
Identity = 44/157 (28.03%), Postives = 83/157 (52.87%), Query Frame = 1
Query:  274 SCLNCSLEHFYSTYVHHLQRKYSLTSFNLLGHTAPAQAATLLVIGPFLDNWLTDKRIYAYDYNIASVIFLILSCTIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSN--ASTKPGGKERRSSLP 738
            + L   +   Y  +V   Q +  + S  LL + AP  +A LLV  PF +    +  I+   +++++++ ++LS  IA   NLS +  IG  + V++ + GH K  + L  G++ F K+ L+++  LGM+  +FG++ Y++   S + G K +    P
Sbjct:  159 AALGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAMLLVAVPFFEPVFAEGGIFG-PWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYVLF-KDPLSINQGLGMLCTLFGILAYTHFKLSEQEGSKSKLVQRP 313          
BLAST of DY306105 vs. ExPASy Swiss-Prot
Match: S35E3_HUMAN (Solute carrier family 35 member E3 OS=Homo sapiens GN=SLC35E3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.350e-11
Identity = 42/157 (26.75%), Postives = 84/157 (53.50%), Query Frame = 1
Query:  274 SCLNCSLEHFYSTYVHHLQRKYSLTSFNLLGHTAPAQAATLLVIGPFLDNWLTDKRIYAYDYNIASVIFLILSCTIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSN--ASTKPGGKERRSSLP 738
            + L   +   Y  +V   Q +  + S  LL + AP  +A LLV  PF +    +  I+   +++++++ ++LS  IA   NLS +  IG  + V++ + GH K  + L  G++ F K+ L+++  LG++  +FG++ Y++   S + G + + +  P
Sbjct:  159 AALGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAMLLVAVPFFEPVFGEGGIFG-PWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYVLF-KDPLSINQALGILCTLFGILAYTHFKLSEQEGSRSKLAQRP 313          
The following BLAST results are available for this feature:
BLAST of DY306105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y1689_ARATH9.718e-3538.89Uncharacterized membrane protein At1g06890 OS=Arab... [more]
S35E3_BOVIN3.299e-1128.03Solute carrier family 35 member E3 OS=Bos taurus G... [more]
S35E3_HUMAN7.350e-1126.75Solute carrier family 35 member E3 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3CD02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306105 ID=DY306105; Name=DY306105; organism=Citrus sinensis; type=EST; length=1300bp
GATCCAACCCTCCCATTTACCGTTCCGAGAACTTCTAAAATTCGTTATTT
TTGCAAACTTCTCTATAGTTGGAATGAATGTCAGTCTAATGTGGAACTCA
GTGGGATTCTATCAGATTGCAAAACTGAGTATGATCCCTGTATCCTGCCT
TTTGGAAGTTGTGTTGGACAAGATTCGATACTCCAGAGACACAAAGTTAA
GCATCGCAGTCGTTCTATTGGGTGTTGGGGTTTGCACAGTTACTGATGTG
AGTGTCAATGCCAGAGGCTTCATAGCTGCCTTAATTGCAGTTTGGAGCAC
TTCTATTCAACATATGTACATCACCTTCAGCGGAAATATTCACTTACTTC
TTTCAATCTATTGGGACATACCGCTCCTGCCCAAGCTGCAACACTGTTGG
TAATAGGCCCATTTCTTGATAATTGGTTGACAGACAAAAGAATTTATGCC
TATGACTACAACATAGCCTCAGTGATTTTCTTAATCCTGTCATGCACGAT
AGCTGTAGGGACCAACCTCAGCCAGTTCATTTGCATCGGCAGATTCACAG
CTGTGTCCTTTCAAGTACTCGGTCATATGAAGACAATACTCGTATTGATC
ATGGGATTCTTATTTTTTGGAAAAGAGGGTCTCAACTTGCATGTGGTTCT
GGGTATGATCATTGCTGTATTTGGAATGATTTGGTACAGCAATGCCTCGA
CGAAGCCCGGTGGTAAGGAACGACGGAGTTCACTTCCCTACACCAAACCA
CAAAAACATGGTAATTTTGGGAGAATCCAATGAACATGATGGGAAAGTCT
AAGTAGGAAAAACCTGAACCTTACAACATAGCTGAATTTCAGAAATTCTT
TGGTCTTTGGAAATTAAATTTTTCAACCATTTTATTCAAATTATTTTTTC
CCCGTCATTTCGGTCACCTTTATTTTTGGAATTTTTTATGGAAACCAATT
TTAAAAAAAAAAAAAAAAAAAAATCCTCGAGGGGGGGCCCCCGGAACCCC
AATCCCGCCCAAAAAGTAAATTCATATTCACAATTTTCTGGGGCCCACTG
TTTTTAAAAACCTCCGGGAAACGGGGTAAAACCCCTGGGGCTATACACCC
ACATTTATTTCCCCCCTGTGTAACCCAACACCCCCCCCTTTTTCCTCCAC
ACTGTGGTTCAAAAAAGAACACGAAAGAGAACCCCCCACCAAGCCCTAAA
TCCCCCCTCCCCCACTCCCCACCTAGAATGTCTCTACCCTCACCCCCACC
CATAGGAGGCGACGCAGACATGAGAAGGGCGTCAACGACTTGTATGAATA
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