DY306102

Overview
NameDY306102
Unique NameDY306102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306102 vs. ExPASy Swiss-Prot
Match: THRC_SOLTU (Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.944e-56
Identity = 109/170 (64.12%), Postives = 126/170 (74.12%), Query Frame = 2
Query:  143 PIIRASSDNNPSQPKHTNRXXXXXXINIRDEARRRNVIYTHKFSAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGSYWKALFDSRVGKRTWPYGSGVWSXKEWVLPEIDIDDIMSAFKGNSNLFWAETFGKNFLQMTD*WVTQSGKKTTIAFRIYG 652
            PI   ++++  SQ KH          NIR+EARR     +H FSA+YVPFNAGP+  E YSLDE+VYRS+SGGLLDVQHDM ALK +DG YW++LFDSRVGK TWPYGSGVWS KEWVLPEID DDI+SAF+GNSNLFWAE FGK FL MTD WV   G   T +F+  G
Sbjct:   36 PIKATATNDAISQQKHRRPADE----NIREEARRH--CSSHNFSARYVPFNAGPNSDEWYSLDEIVYRSRSGGLLDVQHDMDALKKFDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMTDLWVKHCGISHTGSFKDLG 199          
BLAST of DY306102 vs. ExPASy Swiss-Prot
Match: THRC1_ARATH (Threonine synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TS1 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.602e-55
Identity = 103/144 (71.53%), Postives = 114/144 (79.17%), Query Frame = 2
Query:  221 NIRDEARRRNVIYTHKFSAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGSYWKALFDSRVGKRTWPYGSGVWSXKEWVLPEIDIDDIMSAFKGNSNLFWAETFGKNFLQMTD*WVTQSGKKTTIAFRIYG 652
            NIRDEARR      + FSAKYVPFNA P  TESYSLDE+VYRS+SGGLLDV+HDM ALK +DG+YW+ LFDSRVGK TWPYGSGVWS KEWVLPEID DDI+SAF+GNSNLFWAE FGK FL M D WV   G   T +F+  G
Sbjct:   63 NIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLG 206          
BLAST of DY306102 vs. ExPASy Swiss-Prot
Match: THRC2_ARATH (Threonine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TS2 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.889e-55
Identity = 112/193 (58.03%), Postives = 130/193 (67.36%), Query Frame = 2
Query:   74 HNHCFTSKTSQPSLLKKPISSNYPIIRASSDNNPSQPKHTNRXXXXXXINIRDEARRRNVIYTHKFSAKYVPFNAGPSCTESYSLDEVVYRSQSGGLLDVQHDMGALKHYDGSYWKALFDSRVGKRTWPYGSGVWSXKEWVLPEIDIDDIMSAFKGNSNLFWAETFGKNFLQMTD*WVTQSGKKTTIAFRIYG 652
            H+  +    S+ SL  KP S+    +R +S +    P+   +       NIRDEARRR        SA+YVPFNA PS TESYSLDE+VYRSQSG LLDVQHD  ALK YDG +W+ LFDSRVGK  WPYGSGVWS KEWVLPEID DDI+SAF+GNSNLFWAE FGK +LQM D WV   G   T +F+  G
Sbjct:    8 HSATYFPSHSETSL--KPHSAASFTVRCTSASPAVPPQTPQKPRRSPDENIRDEARRRPH-QLQNLSARYVPFNAPPSSTESYSLDEIVYRSQSGALLDVQHDFAALKRYDGEFWRNLFDSRVGKTNWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQYLQMNDLWVKHCGISHTGSFKDLG 197          
The following BLAST results are available for this feature:
BLAST of DY306102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
THRC_SOLTU8.944e-5664.12Threonine synthase, chloroplastic OS=Solanum tuber... [more]
THRC1_ARATH2.602e-5571.53Threonine synthase 1, chloroplastic OS=Arabidopsis... [more]
THRC2_ARATH9.889e-5558.03Threonine synthase 2, chloroplastic OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3CC11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306102 ID=DY306102; Name=DY306102; organism=Citrus sinensis; type=EST; length=838bp
GCAGCATTAAAACCCGTTTCCTCTCAAGTCAACAATGGCCGCCTCTGCTG
CTCTCTTTCACCAACCGCACTGCCACAACCATTGCTTCACCTCCAAAACA
TCACAACCCAGCCTTCTCAAAAAGCCGATCTCCTCTAACTATCCCATCAT
CAGAGCTTCTTCTGACAACAACCCATCTCAACCGAAACACACAAACAGAG
GTGGCGGCGGCAGTGGCATCAACATAAGGGACGAGGCACGTCGCCGGAAT
GTTATCTACACCCACAAGTTTTCTGCAAAGTACGTGCCATTCAATGCGGG
GCCGTCTTGTACTGAGTCGTATTCTCTCGACGAGGTCGTGTACAGGTCCC
AGTCTGGGGGACTTCTCGACGTGCAGCACGACATGGGCGCTTTGAAGCAC
TACGACGGCTCTTACTGGAAGGCGCTGTTCGATTCACGAGTCGGCAAAAG
GACGTGGCCGTACGGATCAGGGGTTTGGTCANAGAAAGAGTGGGTGCTGC
CCGAGATTGATATTGATGATATCATGAGCGCTTTCAAAGGGAACTCGAAT
CTGTTCTGGGCTGAAACATTTGGCAAAAACTTTTTGCAAATGACTGATTG
ATGGGTCACACAATCTGGGAAGAAAACAACCATAGCGTTTAGAATATATG
GTTAGCATGGAGCAGATCACCCTTGCNAATGGTGGCAAAATATCAAAAAA
GGCCCAAANTAANGCCCCTACCCTTNAGGTGNAAAAATAGATTGGNNTAA
GGNNAAATNNAAGGGCNTANNATTTGTTTNANCTCTCCCGTGTCTTATGA
GNNANGGCCTNTNATTTTATAAGCGNNATAACCGAANG
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