DY306099

Overview
NameDY306099
Unique NameDY306099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1262
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY306099 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.403e-51
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    4 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAITKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 318
            PSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAI KHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   47 PSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of DY306099 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.403e-51
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    4 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAITKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 318
            PSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAI KHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   47 PSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of DY306099 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.126e-51
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    4 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAITKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 318
            PSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+I KHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   47 PSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of DY306099 vs. ExPASy Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 9.095e-51
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    4 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAITKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 318
            PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+I KHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:   47 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
[Close]
BLAST of DY306099 vs. ExPASy Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 2.477e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:    4 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAITKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 318
            PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAI KHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   47 PSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of DY306099 vs. ExPASy Swiss-Prot
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 2.477e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:    4 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAITKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 318
            PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAI KHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   47 PSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of DY306099 vs. ExPASy Swiss-Prot
Match: RS13_MAIZE (40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 3.235e-48
Identity = 97/105 (92.38%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:    4 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAITKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 318
            PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAI KHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:   47 PSQIGVLLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
[Close]
BLAST of DY306099 vs. ExPASy Swiss-Prot
Match: RS13_XENLA (40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.077e-43
Identity = 86/105 (81.90%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    4 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAITKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 318
            PSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+ KHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   47 PSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNWKYESSTASALVA 151
[Close]
BLAST of DY306099 vs. ExPASy Swiss-Prot
Match: RS13_RAT (40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.077e-43
Identity = 86/105 (81.90%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    4 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAITKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 318
            PSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+ KHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   47 PSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
[Close]
BLAST of DY306099 vs. ExPASy Swiss-Prot
Match: RS13_MOUSE (40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.077e-43
Identity = 86/105 (81.90%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    4 PSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAITKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 318
            PSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+ KHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   47 PSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
The following BLAST results are available for this feature:
BLAST of DY306099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RS132_ARATH1.403e-5198.1040S ribosomal protein S13-2 OS=Arabidopsis thalian... [more]
RS131_ARATH1.403e-5198.1040S ribosomal protein S13-1 OS=Arabidopsis thalian... [more]
RS13_SOYBN3.126e-5197.1440S ribosomal protein S13 OS=Glycine max GN=RPS13 ... [more]
RS13_PEA9.095e-5197.1440S ribosomal protein S13 OS=Pisum sativum GN=RPS1... [more]
RS132_ORYSJ2.477e-4892.3840S ribosomal protein S13-2 OS=Oryza sativa subsp.... [more]
RS131_ORYSJ2.477e-4892.3840S ribosomal protein S13-1 OS=Oryza sativa subsp.... [more]
RS13_MAIZE3.235e-4892.3840S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=... [more]
RS13_XENLA1.077e-4381.9040S ribosomal protein S13 OS=Xenopus laevis GN=rps... [more]
RS13_RAT1.077e-4381.9040S ribosomal protein S13 OS=Rattus norvegicus GN=... [more]
RS13_MOUSE1.077e-4381.9040S ribosomal protein S13 OS=Mus musculus GN=Rps13... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CC07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306099 ID=DY306099; Name=DY306099; organism=Citrus sinensis; type=EST; length=1262bp
GCACCATCTCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCA
AGTGAAGAGTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATG
GGCTTGCTCCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCA
GTCGCTATTACGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAA
GTTTAGGTTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACT
ACAAGAAGACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACT
GCCAGCACTCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAA
CTTCCAGGATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTA
TTGTTATTCCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGA
TTAGGGCGGAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCT
CTCTGGATCCTTTTGTTTCTATTTTTGGTACTTTTGAAATTATGATTCTT
AGATGCATAATGTTCTCGTTCTAGTGTGGGAATTTCTATGGACGCCATTG
ACAGGGTTTGGTTTTGCATGACCTTTCTCTGTTGGTTGGATTTTTTAAGA
TGGTGCTTTTGTTACAGTTGCTCTTTGGTAATCCATGATGCGGAATTTCC
ATGTTTAACTTTTGTAGTTTTGTTCCTCCTATTTAAATAAAGAATGTCAT
GACCTTGGTTATGGAGGTTGCTTTGCTGGCTGTGACTCCCAAAAAAAACC
CCGCCGAAAAAAACTTTCAAAGAATACAAAAATCCTTTGAAATGCCTGAG
GGCCCCTCAGGGGGGGGGCCCCCGACACCTTCTCCCCCCAAAGAAAACAA
AAAATAATTTCCTGAGCCGCGCATTTTAAAACGCCAGGACGGGAAAAAAC
CCCGGGGGGATACCCGAAATTATACCCCTTTCCACCACAACCTCCCCTTT
CGCACCCCGTGGGCGAAAAAAAACAAAAAAAGGTCGCGCTCCACAGTTCC
CCCCTTCCAAACATGGAGGCCGGACCCACATAAGTGAGGGGAGAAGGAGT
GACTTAGTGCGACCGAATATAAGAAATATTTGTAAGTATTAATTTCTCAC
TAACAATATTTATTTGTGTGAGGGTTGCCTTCATCTGTTCGTTTTTTTTG
TCTAACATACTGAGCTGGGCGGGAGCGCAAATCGCCCGAGACGTGAAAGG
GCTCGCATCCAC
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