DY306098

Overview
NameDY306098
Unique NameDY306098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1218
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306098 vs. ExPASy Swiss-Prot
Match: CAF2P_ARATH (CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 5.058e-83
Identity = 152/231 (65.80%), Postives = 185/231 (80.09%), Query Frame = 2
Query:    2 NYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDADGSGTPSDD---PSQGTIRSSPKMISLWKRAIESTKALVLDEINLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSMAEYEDGSQ 685
            NYRTRPQYPLMLWKPAAPVYPKLIQE PEGLTK EA E R KGKSL PICKL+KNGVY++LV+DVR+AFE SSLVKV+C G+  SDYKK+GAKLKELVPCVLLSFDDEQILMWRG++WKS + + P   +  + +   + D S  PS++    +  T  SSPKMISLW+RA+ES+KA++L+E++LGPDDLLKKVEE EG S AAEH+Y A+VLS  DGA+    + +D S+
Sbjct:  291 NYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFVDNPLIPSLSETNTTNELDPSDKPSEEQTVANPSTTISSPKMISLWQRALESSKAVILEELDLGPDDLLKKVEELEGTSLAAEHTYTAMVLSNTDGAAEDYVDEKDRSE 521          
BLAST of DY306098 vs. ExPASy Swiss-Prot
Match: CAF2P_ORYSJ (CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 2.604e-71
Identity = 135/234 (57.69%), Postives = 176/234 (75.21%), Query Frame = 2
Query:    2 NYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEIN---LGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEYED 676
            N RTRP+YPLMLWKPA PVYPKLIQEAPEGLTK EADE+RR+GK LLPICKLAKNG+Y+ LVRDVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFD+EQILM+RGK+WKS YP+P +    +   ++ ++ D   S   +DD  +  +R    PKM  LW  AIES+ AL+LD+     L PD LL +VE+F   SQ  EHS+PA++++ ++     + AEY +
Sbjct:  318 NPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILMFRGKEWKSRYPKPLTLIPKIRKNNVPMSSDESSSDEATDDDDRLAVREVLRPKMFELWTNAIESSVALMLDDAEVDALTPDSLLTRVEDFSVTSQVVEHSFPAVLVANDESNPDVLNAEYTE 551          
BLAST of DY306098 vs. ExPASy Swiss-Prot
Match: CAF2P_MAIZE (CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 4.441e-71
Identity = 138/230 (60.00%), Postives = 175/230 (76.09%), Query Frame = 2
Query:    8 RTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPV---DLDIAGDADGSGTPSDDPSQGTIRS--SPKMISLWKRAIESTKALVLDEI---NLGPDDLLKKVEEFEGISQAAEHSYPALVLSREDGASSSM-AEY 670
            +TRP+YPLMLWKPA PVYPKLI+EAP+G TK EADE+RRKG+ LLPICKLAKNG+Y+TLV+DVR+AFEGS LVK++C+G++ SDYKK+GAKL++LVPCVLLSFDDEQILM RGK+WKS Y +P +    V   +L +    + S   SD  +Q  IR    PKM  LWK A++S+ AL+LD+    NL PD LL  VEEF   SQA EHS+PAL+++  D ++ S+ AEY
Sbjct:  324 KTRPRYPLMLWKPATPVYPKLIKEAPDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDDEQILMHRGKEWKSRYSKPLTLIPKVPKNNLAMTSVMNSSDEVSDANTQVAIREVLRPKMFKLWKSAVDSSLALLLDDAEANNLTPDSLLTLVEEFSVTSQAVEHSFPALLVTNGDASTDSLSAEY 553          
BLAST of DY306098 vs. ExPASy Swiss-Prot
Match: CAF1P_ARATH (CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 3.424e-47
Identity = 89/167 (53.29%), Postives = 124/167 (74.25%), Query Frame = 2
Query:    2 NYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPP---SFSNPVDLDIAGDADGSGTPSDDPSQGTIRSSPKMISL 493
            N+RTRP++PLMLWKP APVYP+LIQ+ PEGLT+ EA  +RRKG+ L+PICKL KNGVY  LV++V+ AFE   LV+++C+GM  SD++K+GAKLK+LVPCVL+SF++EQIL+WRG++WKS    P         +++D A   D   + S + SQ T+  +P + S+
Sbjct:  331 NHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGDILEDIEVDTALPEDDEPSVSPNQSQ-TMTQNPPLDSM 496          
BLAST of DY306098 vs. ExPASy Swiss-Prot
Match: CAF1P_ORYSJ (CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.454e-45
Identity = 87/147 (59.18%), Postives = 109/147 (74.15%), Query Frame = 2
Query:    2 NYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP--EPPSFSNPVDLDIAGDADGSGT 436
            NYRTRP YPLMLWKPAAPVYP+L+++ P+GLT  EA+++R++G+ L PICKL KNGVYL LV+ VR AFE   LV+V+C G++ SD +K+GAKLK+LVPC LLSF+ E ILMWRG DWKS  P  E   F    D  +     GSG+
Sbjct:  273 NYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWRGNDWKSSLPPLEENDFKVASDQILNSKEAGSGS 419          
BLAST of DY306098 vs. ExPASy Swiss-Prot
Match: CAF1P_MAIZE (CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.539e-42
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 2
Query:    2 NYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYP 370
            NYRTRP +PLMLWKP APVYP+L+ + P GLT  EA E+R +G  L PICKL KNGVY  LV  VR AFE   LV+V+C G++ SD +K+GAKLK+LVPC+LLSF+ E ILMWRG DWKS  P
Sbjct:  273 NYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLP 395          
BLAST of DY306098 vs. ExPASy Swiss-Prot
Match: CAF1M_ORYSJ (CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.064e-32
Identity = 65/118 (55.08%), Postives = 88/118 (74.58%), Query Frame = 2
Query:    2 NYRTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDW 355
            N + RP  PLMLWKPA PVYP+LI+   EGLT  E  E+R+KG  +  + KLAKNG Y +LV  VR+AF    LV+++ KG+  SDY+K+G KL++LVPC+++SFD EQI++WRGKD+
Sbjct:  247 NPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGKDY 364          
BLAST of DY306098 vs. ExPASy Swiss-Prot
Match: CAF1M_ARATH (CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana GN=At4g31010 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.017e-31
Identity = 66/139 (47.48%), Postives = 99/139 (71.22%), Query Frame = 2
Query:    8 RTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGKDWKSMYPEPPSFSNPVDLDIAGDAD 424
            + RP+ PLMLWKP  PVYP+LI+   +GL+  E   +R+KG ++  + KLAKNG Y +LV  VR+AF  S LV+++C G+   DYKK+GAKL++LVPC+L++FD EQ+++WRGKD+K    E   +S+ +  + + D+D
Sbjct:  251 KKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYKPP-KEDDEYSSFIHRESSIDSD 388          
BLAST of DY306098 vs. ExPASy Swiss-Prot
Match: CAF2M_ORYSJ (CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0188000 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 2.465e-29
Identity = 59/114 (51.75%), Postives = 82/114 (71.93%), Query Frame = 2
Query:    8 RTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 349
            + RPQ PLMLWKP AP+YP+L+Q   +GLT  +  ELR  G +  P+ KL +NGVY+ +V  VR AF+   +V+++C  + +SD KK+G KL++LVPCV L F DEQI++WRGK
Sbjct:  237 KQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGK 350          
BLAST of DY306098 vs. ExPASy Swiss-Prot
Match: CAF2M_ARATH (CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana GN=At5g54890 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 7.423e-26
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 2
Query:    8 RTRPQYPLMLWKPAAPVYPKLIQEAPEGLTKHEADELRRKGKSLLPICKLAKNGVYLTLVRDVRNAFEGSSLVKVNCKGMHASDYKKLGAKLKELVPCVLLSFDDEQILMWRGK 349
            ++RP  PLMLWKP  P+YP+L++   +GL   E  E+R +G     + KL +NGVY+ +V  VR  FE   +V+++C  +  SD K++G KLKE+VPCV + F DEQI++WRGK
Sbjct:  235 KSRPIIPLMLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGK 348          
The following BLAST results are available for this feature:
BLAST of DY306098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CAF2P_ARATH5.058e-8365.80CRS2-associated factor 2, chloroplastic OS=Arabido... [more]
CAF2P_ORYSJ2.604e-7157.69CRS2-associated factor 2, chloroplastic OS=Oryza s... [more]
CAF2P_MAIZE4.441e-7160.00CRS2-associated factor 2, chloroplastic OS=Zea may... [more]
CAF1P_ARATH3.424e-4753.29CRS2-associated factor 1, chloroplastic OS=Arabido... [more]
CAF1P_ORYSJ2.454e-4559.18CRS2-associated factor 1, chloroplastic OS=Oryza s... [more]
CAF1P_MAIZE2.539e-4264.23CRS2-associated factor 1, chloroplastic OS=Zea may... [more]
CAF1M_ORYSJ4.064e-3255.08CRS2-associated factor 1, mitochondrial OS=Oryza s... [more]
CAF1M_ARATH2.017e-3147.48CRS2-associated factor 1, mitochondrial OS=Arabido... [more]
CAF2M_ORYSJ2.465e-2951.75CRS2-associated factor 2, mitochondrial OS=Oryza s... [more]
CAF2M_ARATH7.423e-2646.49CRS2-associated factor 2, mitochondrial OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3CC06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306098 ID=DY306098; Name=DY306098; organism=Citrus sinensis; type=EST; length=1218bp
TAACTATCGCACTCGTCCTCAATACCCACTGATGCTCTGGAAACCAGCTG
CTCCTGTTTACCCAAAGCTTATCCAAGAAGCCCCTGAAGGATTGACAAAA
CATGAAGCCGATGAGTTGCGGAGGAAAGGGAAATCCCTACTGCCTATTTG
TAAATTAGCAAAAAATGGAGTGTACCTTACCCTGGTGAGAGATGTTAGGA
ATGCTTTTGAAGGAAGTTCATTGGTTAAGGTTAACTGCAAAGGGATGCAT
GCAAGTGATTACAAGAAGTTGGGTGCTAAGCTTAAGGAATTGGTTCCCTG
CGTGCTATTATCTTTTGACGATGAACAGATATTGATGTGGAGAGGAAAAG
ATTGGAAATCAATGTATCCAGAACCTCCTTCATTTTCAAATCCTGTTGAC
CTTGACATTGCTGGAGATGCAGATGGTTCAGGGACGCCTAGTGATGACCC
TAGCCAAGGAACCATTAGATCAAGTCCTAAAATGATATCCCTCTGGAAGC
GCGCAATTGAATCAACCAAGGCATTGGTACTGGATGAGATTAATCTTGGT
CCTGATGATCTTTTGAAGAAGGTTGAAGAATTTGAGGGTATTTCACAGGC
CGCAGAGCACTCCTATCCAGCGTTAGTTTTGTCAAGGGAAGACGGTGCCA
GTAGTTCAATGGCAGAGTACGAAGATGGTTCTCAAAGTGAGAATTATGAC
GAAGATGAATTTTATCCTGAGGATGACTTCAACGATGACGATGAATTTTA
TGATAGTGACTCATCTGATGTTGTCCCATTANGGTCATTACCTGTTGATC
ATAAAGCAAAGAGGCTCCAGCGGAAATGAAATTCCAAGTAAAAAAGATCA
ATTGGACTTCTTTTGGGCTCTGATGTTGTTTGTACCAGTAAATAAATGGG
TACAAAAAAATGTAAATTTTTGTCCCGGGGTGGGGTCCCAATCCTTTTTG
TTCCCAAAGGCTAGTGGATTTTGAATGTGGGTTTTAACCAGGAACAAATA
AAACCTTGCCCCCCTTTTTTTATACCCTAAAAAATAAAAGTTGAAAATTA
ATAAATGTTCAACAGGCCTAAAACCAAAAATTTTTAATTTTAGGGAAACC
TTTCCTAAGGGAAACAAAATTCTGCTAAACAAAAAACACTCCCCCCCCCC
CCCCCCCCCCCACCCCCCCCAATTTTTCCTCCATTTTTTTTTTTTATAAT
TCTTCTCCACCACCCCCC
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