DY306092

Overview
NameDY306092
Unique NameDY306092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1164
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 9.293e-63
Identity = 147/272 (54.04%), Postives = 175/272 (64.34%), Query Frame = 3
Query:  186 NVNFVSGFPSTKSL----LANGHSSYLAFVKLATK------SSISIK-GVGKTRATLISGEGDLLAYPNGNNLVAESTGADDQLVGIELQPDAIAFGALAADTAPT-TXXXXXXXXXXXXXXPTEGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGGNSGKELGPTE 965
            ++N  S  PST SL    L+   ++ L  +   T       S+ SIK   GK +A +IS E DLL++ NGN  ++  +  DD+     L+ D+++ G LAAD+AP                 PT GFSSIPEAIEDIRQGK               L+MAAQLATPEAMAFIV+HGTGIVCVSMK +DLERL LPLMV QKEN+EKL TAFTVTVDAKHGTT GVSARDRA T+L+LAS+DSKP DFNR G IFPLKY +GG   K  G TE
Sbjct:    3 SINLSSSSPSTISLSRSRLSQSSTTLLHGLHRVTLPSNHPLSTFSIKTNTGKVKAAVISREDDLLSFTNGNTPLSNGSLIDDRTEE-PLEADSVSLGTLAADSAPAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQLATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVDAKHGTTTGVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVL-KRAGHTE 272          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBB_NEIMB (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria meningitidis serogroup B GN=ribB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.004e-24
Identity = 60/135 (44.44%), Postives = 83/135 (61.48%), Query Frame = 3
Query:  531 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            S IPE + DI+ GK               L+MAAQ  TPEA+ F++KH  G+VC+ M GE +E+L LP+M   ++N  +  T FTV+++A HG T G+SA DRA T+ T  S  +KP D  + G IFPL+ +KGG
Sbjct:    5 SPIPEILADIKAGKMVIITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMT--QKNGAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIVQPGHIFPLRAQKGG 137          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBB_NEIMA (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria meningitidis serogroup A GN=ribB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.312e-24
Identity = 60/135 (44.44%), Postives = 83/135 (61.48%), Query Frame = 3
Query:  531 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            S IPE + DI+ GK               L+MAAQ  TPEA+ F++KH  G+VC+ M GE +E+L LP+M   ++N  +  T FTV+++A HG T G+SA DRA T+ T  S  +KP D  + G IFPL+ +KGG
Sbjct:    5 SPIPEILADIKVGKMVIITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMT--QKNGAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIVQPGHIFPLRAQKGG 137          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_AQUAE (Riboflavin biosynthesis protein ribBA OS=Aquifex aeolicus GN=ribBA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.985e-24
Identity = 63/138 (45.65%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  528 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDA--KHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            F+++ EAIEDIRQGK               L+MAA+  TPEA+ F+ K+G G++C+S+  E  E+LDL  M     N +   T F V++DA  KHGTT G+SA DRA T+    S D+KP DF R G +FPLK   GG
Sbjct:    9 FNTVEEAIEDIRQGKMVIVVDDPDRENEGDLVMAAEKVTPEAINFMAKYGRGLICLSLTPERCEQLDLHPMTPM--NTDPKGTYFCVSIDAHPKHGTTTGISAYDRALTIKLAISPDAKPSDFVRPGHVFPLKARPGG 144          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBB_AGRT5 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ribB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.894e-23
Identity = 65/145 (44.83%), Postives = 87/145 (60.00%), Query Frame = 3
Query:  531 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGGNSGKELGPTE 965
            + I +AIE I +G+               +I A+   TP+ +AF++ H  G+VCV+M GE L+ LD+PLMV++  N E L TAFTV+VD   GTT G+SA DRA TV  L S+ S+P DF R G IFPL+    G  G+  G TE
Sbjct:    4 AKIEDAIEAISRGEMVIVVDDEDRENEGDIIAASDSITPQQIAFMMNHARGLVCVAMPGERLDALDIPLMVSR--NTESLKTAFTVSVDYIPGTTTGISAADRAKTVRALVSEGSRPEDFARPGHIFPLRANPEGVLGR-TGHTE 145          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_SYNWW (Riboflavin biosynthesis protein ribBA OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=ribBA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.094e-22
Identity = 61/136 (44.85%), Postives = 83/136 (61.03%), Query Frame = 3
Query:  528 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            FSSI E I+DI++GK               +I+AA+ A PEA+ F+  H  G++C+ + GE L+ L++  MV   EN +   TAFTVTVD + GTT G+SA +RA TV  L    SKP DF + G IFPL+Y +GG
Sbjct:    2 FSSIEEVIQDIKEGKMIVLVDDEDRENEGDVIIAAEKAGPEAINFMATHAKGLICMPIIGERLDELEIHDMVT--ENTDNHETAFTVTVDYR-GTTTGISAFERAATVKALIDSVSKPSDFRKPGHIFPLRYREGG 134          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIB3_SCHPO (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Schizosaccharomyces pombe GN=SPBC23E6.06c PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.094e-22
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = 3
Query:  531 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKD-SKPGDFNRRGPIFPLKYEKGG 935
            +SI EA+ D R GKF              LI+A    T E MAF+V+H +G VCV M GE L+ L++P+MV    N++++ TA+ VT+D  +GTT G+SA DRA T   LA+ + + P +FNR G I PL+   GG
Sbjct:    3 ASIEEAVNDFRDGKFLIVLDDETRENEGDLIIAGCKVTTEQMAFLVRHSSGYVCVPMTGERLDSLEIPMMV--DNNEDRMRTAYAVTLDYANGTTTGISAHDRALTTRQLANPEVTSPREFNRPGHIVPLRARDGG 136          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_NOCFA (Riboflavin biosynthesis protein ribBA OS=Nocardia farcinica GN=ribBA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.735e-22
Identity = 58/136 (42.65%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  528 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            F +I  A+ DI  GK               LI AA+ ATPE +AF++++ +G +CV + GED +RL LP M A   N +K  TA+TV+VDA+ G T G+SA DRA T+  LA  D+K  D  R G + PL+ + GG
Sbjct:    4 FDTIERAVADIAAGKAVVVVDDEDRENEGDLIFAAEKATPELVAFMIRYTSGYICVPLTGEDCDRLGLPPMYAT--NQDKHGTAYTVSVDAREGITTGISAADRATTMRLLADADAKADDLTRPGHVVPLRAKDGG 137          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLPN (Riboflavin biosynthesis protein ribBA OS=Chlamydia pneumoniae GN=ribBA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.735e-22
Identity = 66/147 (44.90%), Postives = 80/147 (54.42%), Query Frame = 3
Query:  528 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGGNSGKELGPTET 968
            F S+  AIED+R GKF              LI+A +  T E M F+++H TG+VC ++  E L  LDLP MV  K+N  +  T FTV+VDA HG T GVSA DR   V  LA   SKP DF   G  FPL    GG   K  G TE+
Sbjct:   13 FVSLERAIEDLRAGKFVIVVDEASREDEGDLIIAGEKITVEKMTFLLQHTTGVVCAALSQERLLSLDLPPMV--KDNRCRFKTPFTVSVDAAHGVTTGVSAADRTKVVQLLADPKSKPEDFISPGHFFPLASSPGGVL-KRAGHTES 156          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_RHOE4 (Riboflavin biosynthesis protein ribBA OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ribBA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.958e-22
Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  528 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            F SI  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G+D +RL LP M A   N +K  TA+TVTVDA+ G   G+SA DRA T+  LA+ +S   DF R G + PL+ ++GG
Sbjct:    4 FDSIERAVADIAAGKAVVVVDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLDGDDCDRLGLPPMYAT--NQDKHGTAYTVTVDAREGIGTGISASDRAATMRLLANPESGANDFTRPGHVVPLRAKEGG 137          
The following BLAST results are available for this feature:
BLAST of DY306092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
RIBBA_ARATH9.293e-6354.04Riboflavin biosynthesis protein ribBA, chloroplast... [more]
RIBB_NEIMB1.004e-2444.443,4-dihydroxy-2-butanone 4-phosphate synthase OS=N... [more]
RIBB_NEIMA1.312e-2444.443,4-dihydroxy-2-butanone 4-phosphate synthase OS=N... [more]
RIBBA_AQUAE4.985e-2445.65Riboflavin biosynthesis protein ribBA OS=Aquifex a... [more]
RIBB_AGRT51.894e-2344.833,4-dihydroxy-2-butanone 4-phosphate synthase OS=A... [more]
RIBBA_SYNWW2.094e-2244.85Riboflavin biosynthesis protein ribBA OS=Syntropho... [more]
RIB3_SCHPO2.094e-2243.383,4-dihydroxy-2-butanone 4-phosphate synthase OS=S... [more]
RIBBA_NOCFA2.735e-2242.65Riboflavin biosynthesis protein ribBA OS=Nocardia ... [more]
RIBBA_CHLPN2.735e-2244.90Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]
RIBBA_RHOE47.958e-2243.38Riboflavin biosynthesis protein ribBA OS=Rhodococc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CB12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306092 ID=DY306092; Name=DY306092; organism=Citrus sinensis; type=EST; length=1164bp
CACAAACAGCGAAGACTCATTCAGCTTTGTTGTTGTTAGAAGAGAGATAG
AGATTACTGGAGAGAAAGAGAGAGAGAGAGAGGCTTAAACCCATAACAAA
TACAAGGGGAAAATAATTAATGGCGGCGTCTCTCAACATATCTTCTCCTT
CAACTTCAGCTCTCTCTTCTCCTCCAGCACGCAGAAATGTGAATTTTGTT
AGTGGATTTCCCAGTACGAAGTCACTTTTGGCAAATGGGCACTCTTCATA
TTTGGCCTTTGTAAAGCTAGCTACTAAATCATCCATTAGTATCAAGGGTG
TCGGCAAAACTAGAGCTACACTGATATCTGGAGAAGGTGACCTTTTAGCT
TATCCCAATGGCAATAACCTTGTGGCCGAAAGTACTGGTGCTGATGATCA
ATTGGTGGGGATTGAGTTACAACCGGATGCAATAGCATTTGGAGCACTTG
CAGCAGATACCGCTCCCACAACTTTTGGATTTTCCAGTGATGATGATGAA
TTTGATTTGGATAGCCCTACAGAAGGTTTTTCTTCTATCCCCGAGGCCAT
TGAAGACATTCGCCAAGGAAAGTTTGTCGTGGTCGTGGATGATGAAGATA
GAGAAAATGAGGGAGATCTTATAATGGCAGCACAGCTCGCAACACCTGAA
GCTATGGCATTTATTGTAAAACATGGAACTGGAATTGTTTGCGTGAGCAT
GAAGGGGGAAGATCTGGAGAGGCTGGATCTTCCTTTAATGGTTGCACAAA
AGGAAAATGATGAGAAACTTTGTACTGCATTCACAGTGACAGTGGATGCA
AAACATGGAACAACCCCAGGGGTCTCAGCTCGTGATAGGGCCAACACTGT
TTTGACTCTTGCTTCTAAGGATTCAAAACCTGGGGATTTCAATCGCCGGG
GGCCTATTTTTCCTCTGAAGTACGAAAAGGGGGGGAATTCCGGAAAAGAG
CTGGGTCCTACCGAAACCTTCCGGTGGATCTTGGTGGTGCTTACTGGGGA
TTTGCCCCGGCGACAATTTTTGGTGTGAGGGTGGGGGAAGGAGAAGGGGT
TCCCGGGGCTAAAATTACCAAAACCTTCTCGGGATTTTTCCTAAAAGGGG
GAAAAATTTTAAAATTTATTTTTTCCTTTGTGTCGTGTTTTTTAAAAGGG
GGGTTAGGGGAAGG
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