DY306088

Overview
NameDY306088
Unique NameDY306088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1241
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306088 vs. ExPASy Swiss-Prot
Match: CSN7_ARATH (COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 8.258e-72
Identity = 79/110 (71.82%), Postives = 92/110 (83.64%), Query Frame = 2
Query:  266 KAGSVARCFEVQFAAGRHLKPGQLGSMIQTLSNWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSLSHKADVDCRGHEEIYSEPGGVMDYEEDRGRPKR 595
            K   + RCFEV FAAGR L+PGQLG+M+ TLSNWL TS+NLLISIQ+KIKWAD+M+EMDKKHRK+ EE VEE KKSLS K DVD RG++E++ EP GVMDYEED  RPKR
Sbjct:  144 KLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWLNTSENLLISIQDKIKWADNMSEMDKKHRKEAEEGVEEVKKSLSMKGDVDIRGNKEMFGEPSGVMDYEEDGIRPKR 253          

HSP 2 Score: 127.872 bits (320), Expect = 8.258e-72
Identity = 63/94 (67.02%), Postives = 70/94 (74.47%), Query Frame = 3
Query:    3 GTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVPDQXXXXXXXXXXXXAETNKVLPYDELMEELDVTNVQQLEDFLINECMYTGIERGKLDQLQ 284
            GT +S YLD+LRLFAHGTW DYK NA  LP L PDQ            AE+NKVLPYD LM ELDV+NV++LEDFLINECMY GI RGKLDQL+
Sbjct:   56 GTTDSVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLK 149          
BLAST of DY306088 vs. ExPASy Swiss-Prot
Match: CSN7_DICDI (COP9 signalosome complex subunit 7 OS=Dictyostelium discoideum GN=csn7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.756e-22
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    6 TENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVPDQXXXXXXXXXXXXAETNKVLPYDELMEELDVTNVQQLEDFLINECMYTGIERGKLDQ 278
            TE   Y D+L +FA+G++ DYKN    LPQL P              + T+ V+PY  L E++++TNV++LED +I + +Y  I +GKLDQ
Sbjct:   60 TEFKNYYDLLLIFAYGSFIDYKNKKDSLPQLTPQMITKLKQLTIVFLSSTSNVIPYSVLQEQIEITNVRELEDLII-DSIYQNIIKGKLDQ 149          

HSP 2 Score: 51.9878 bits (123), Expect = 1.756e-22
Identity = 30/95 (31.58%), Postives = 52/95 (54.74%), Query Frame = 2
Query:  293 EVQFAAGRHLKPGQLGSMIQTLSNWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSLSHKADVDCRGHEEIYSEPGGVMDYEED 577
            E+ F+ GR ++P QL SMI  L+NW +TS  LL  I   I  +D ++   +K +++ E K E AK +  + +       E++Y +    M+Y ++
Sbjct:  155 EIDFSIGRDVQPEQLDSMINCLNNWSSTSQKLLDDISGLITHSDKVHLQYRKEKEEFESKFEIAKLNTKNDSPA-----EQLYYDS---MEYSDE 241          
BLAST of DY306088 vs. ExPASy Swiss-Prot
Match: CSN7_DROME (COP9 signalosome complex subunit 7 OS=Drosophila melanogaster GN=CSN7 PE=1 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 6.250e-14
Identity = 31/89 (34.83%), Postives = 46/89 (51.69%), Query Frame = 3
Query:   12 NSKYLDMLRLFAHGTWSDYKNNAGHLPQLVPDQXXXXXXXXXXXXAETNKVLPYDELMEELDVTNVQQLEDFLINECMYTGIERGKLDQ 278
            +SK+ + L LFA+GT+ +Y+       +L P              A   K +PY  L+ EL++ NV+ LED +I E +Y  I  GKL Q
Sbjct:   68 DSKHFETLNLFAYGTYKEYRAQPEKFIELTPAMQKKLQHLTIVSLAIKAKSIPYALLLSELEIDNVRHLEDIII-EAIYADIIHGKLFQ 155          

HSP 2 Score: 45.4394 bits (106), Expect = 6.250e-14
Identity = 24/79 (30.38%), Postives = 45/79 (56.96%), Query Frame = 2
Query:  284 RCFEVQFAAGRHLKPGQLGSMIQTLSNWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSL-SHKADVD 517
            R  EV +A GR + PG  G +++TL  W+ + D++   I+ +IK+A++       +++ +E+ +   KK L S  +D D
Sbjct:  158 RILEVDYAQGRDIPPGYTGQIVETLQAWVNSCDSVSNCIEMQIKYANAEKSKRLINKERVEQDLINLKKVLKSQTSDSD 236          
The following BLAST results are available for this feature:
BLAST of DY306088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CSN7_ARATH8.258e-7271.82COP9 signalosome complex subunit 7 OS=Arabidopsis ... [more]
CSN7_DICDI1.756e-2240.66COP9 signalosome complex subunit 7 OS=Dictyosteliu... [more]
CSN7_DROME6.250e-1434.83COP9 signalosome complex subunit 7 OS=Drosophila m... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3CB07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306088 ID=DY306088; Name=DY306088; organism=Citrus sinensis; type=EST; length=1241bp
GGGGAACTGAAAACTCTAAATACCTTGACATGCTTCGATTGTTTGCACAT
GGGACTTGGAGTGATTACAAAAATAATGCTGGCCATCTTCCACAATTGGT
TCCTGATCAAGTCCTCAAGCTGAAACATCTTACTGTGCTTACACTGGCTG
AGACGAACAAGGTGCTACCCTATGATGAATTGATGGAAGAGTTAGATGTT
ACAAATGTACAACAACTTGAAGATTTTCTTATTAATGAGTGCATGTATAC
AGGCATAGAGAGAGGAAAGCTGGATCAGTTGCAAGATGCTTTGAGGTCCA
ATTTGCAGCTGGAAGACATCTGAAGCCTGGACAGCTTGGGAGTATGATTC
AAACCCTATCAAATTGGCTGACTACATCTGACAATCTTCTAATATCAATC
CAAGAAAAGATAAAATGGGCAGATAGTATGAATGAAATGGACAAGAAACA
CCGGAAGGATCTTGAGGAAAAGGTGGAAGAAGCAAAGAAGTCCCTCTCGC
ACAAGGCCGACGTTGACTGCCGAGGGCACGAGGAGATCTACTCTGAACCT
GGTGGAGTGATGGATTATGAGGAAGATCGTGGCCGGCCCAAGAGGTAATT
TAATGTGCCTTTGCTTTACAAATTTGTCTCTAAGAATTATGTTTTATCGA
GAGCTTCCAACTCATAAAGTTGGAACTTGGATGTCAATATTATATGGTTA
CGGAGTTGGGCTTGTTAGTAGTTAGTCATTCGGACCTCAATTATTGACTG
TTTAAGATGCTTTTGACTTGTCAAATGGGAAGATGCAGGAGGCGACATCC
GTTATCCTGGAGACAAATGTAGAATGTGGGACTTATTGTATTACGTGACT
TGCTACATTTTTGCTCAGGGCAAAATCCAACAACTAGAAGGTTTAAGCTC
TTGGGAAAAGGGCAACCCTCTTTGAAAATAAAATTCCCTTGTTTGACACT
GAAAAACGAAAAATCCAAAAACCTTTCCAAAAACCCTTTTTAATTTCCAT
TGGAGTTAGCAAAAAAATAAAAACCCAAAATTGTGCCTGGCCCGCCAAAA
AAAATTTTCAATTAAAAAAAAAATTTAGGGGACCCCAAACTTTGTAAATT
TTTTCTTTTTTTAAAAAAGGGGGGGCAAAAAAGGGGGAGGGACGCGGGGG
AAGTGAAAAAAAAGGGGTTTTTTTTTTAAAAAAAAATATTTTTAAAAGGG
GGGACGTTTTTTAAAGGGCGCACAACCTCCTTCCTAATTTT
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