DY306087

Overview
NameDY306087
Unique NameDY306087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1227
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY306087 vs. ExPASy Swiss-Prot
Match: UBP23_ARATH (Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.890e-17
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = 1 
Query:   10 NGAVLATDQQLPKHSDSVSEANQQDAVELGALKDGRKDALL--EGMSMLTRGLEETTIARWDGIDLHPHNVESNGTESVSIGYVLDDWDEEYDRGKRKKLRQNRHSFGGPNPFQ 345
            +GAV  +DQQ P  S  +SEA+Q         K  R+  LL  E +++LTRG+ ET +A+WD          S    + SIGYV D+WDEEYDRGK+KK+R    S+ GPNPFQ
Sbjct:  727 DGAV-TSDQQQPVGSSDLSEASQN-------AKRKRESVLLQKEAVNILTRGVPETVVAKWDEEISASQKRGSKSEGASSIGYVADEWDEEYDRGKKKKIRIKEESYRGPNPFQ 832
The following BLAST results are available for this feature:
BLAST of DY306087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBP23_ARATH4.890e-1745.61Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3CB05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306087 ID=DY306087; Name=DY306087; organism=Citrus sinensis; type=EST; length=1227bp
GATAATCTGAATGGTGCTGTGTTGGCAACAGACCAGCAATTACCAAAGCA
TTCTGATTCTGTCTCGGAAGCAAACCAGCAGGATGCAGTAGAACTTGGTG
CTTTAAAAGATGGCAGAAAAGATGCACTGCTGGAAGGGATGAGTATGCTT
ACCCGAGGTCTGGAGGAAACAACTATTGCAAGGTGGGATGGGATTGACTT
GCATCCTCATAATGTAGAATCTAATGGTACAGAGAGTGTCAGCATCGGCT
ATGTTCTAGATGACTGGGACGAAGAATATGATCGTGGCAAGAGAAAGAAG
CTAAGGCAGAATAGGCACAGCTTCGGTGGGCCAAATCCCTTCCAAGAAAT
TGCAGCCAAGAAGACACGATTGAAGAAGGCAAAGCTAAGCTATGCCAGTT
CCGCAGACCAACCATTCAGGATATGAAGATATCAATTTGATGCCCTGACA
CTCCAAGACAAGTAATTTTGACCGGTAAGACCACTCTTATATGATATGTA
GTGATTGTTTCTGTATTTAGGGGAGCCTTGGAAAAAAAAATCCAAAATTT
TAGAAATTTTCTTCTTTGTCCTAGTGAGATTTGTTTGTTGATTGGGGGAG
AGGACTTTGGGAATAAGCTTTTTCTGAAACTTAAATTCTTTTTTTTTCCC
ATTTCTCTCTTTCTAGTTTCTAATGTGGGGAACCGTATGAGCCAAGAGCT
TAATGTGTATCCAAAATGTAACCGCTTCCTGGTCATGAGGAAAGTACACA
ATTAATTAAGTATTAAAAAGTTTAAAACCCCCGAGCCTTTTTTCTCCCCT
TTAAATTTGGTGGTGGTTGATGTAATTTGAAATGTGAATACTGGTTTTTC
TTGTTTCCCCCCCAAAAAAAAAAAAAAAAACCACCGAGGGGGGGCGCGGG
TCCCCATCTCCCCCTATGTGGAGTTGTAATAACATTTACTGGTCCCCCCT
TTTTACAGTTGGGAGCGGGAAAAACCCTGGGCGTTCCCCGATATTATCCC
CGTGTGTACCAGCCCCCCTTTTTCCAGACCGTGCGTAAGACACGAAAGAG
GGCCCCCCCCCATAGCGCCCGTTGCCACAAGTGTGGACCACCCCATAAGG
GGGCGGAGGGGAGAAAAGTATTGATGGGAGGATAGATTGTTAGTGTTTTA
TAGGATTTGGCGACGTAAGAATATTTTTTGGTTGGGTATAACAGCCGCTG
TCGTGCGGCGAGTTTGTTTTTGAGAAT
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