DY306069

Overview
NameDY306069
Unique NameDY306069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1248
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306069 vs. ExPASy Swiss-Prot
Match: ORN_ARATH (Oligoribonuclease OS=Arabidopsis thaliana GN=At2g26970 PE=2 SV=2)

HSP 1 Score: 289.656 bits (740), Expect = 2.497e-77
Identity = 148/245 (60.41%), Postives = 182/245 (74.29%), Query Frame = 3
Query:   24 MDGLSNAFSVLELDADDSQVKTPXXXXXXXXXXXXXXXXXXXXXXXXXXNLTLENQQNSQTPLEF-EYKMPLVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 755
            M+ LSNAFSVL    +D+ + +                           + T + +++    LE  +YK PLVWIDLEMTGLN+EVDRILEIACIIT+G LT+SVEGPDLV+ QTK+CLD M +WCQ HH ASGLTKKVL S +TEREAE++V+EFVKK+VG+  PLLAGNSVYVDF+FLKKYMP+LA+LF H+LVDVSS+KALC RW+P + RK P+K+  HRA+DDIRESI ELKYYK+ IFK
Sbjct:    1 MNKLSNAFSVLAFADEDAPMASS--------------------------SSTGKQEESVNGSLEDGDYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPELAALFPHILVDVSSVKALCARWFPIERRKAPAKKNNHRAMDDIRESIKELKYYKKTIFK 219          
BLAST of DY306069 vs. ExPASy Swiss-Prot
Match: ORN_BOVIN (Oligoribonuclease, mitochondrial OS=Bos taurus GN=REXO2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.593e-47
Identity = 90/174 (51.72%), Postives = 118/174 (67.82%), Query Frame = 3
Query:  234 LVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 755
            +VW+DLEMTGL+IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLTK V  S +T ++AE + + FV++        LAGNSV+ D  FL KYMP       + ++DVS++K LC RWYP +Y   P K   HRALDDI ESI EL++Y+ NIFK
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNNIFK 216          
BLAST of DY306069 vs. ExPASy Swiss-Prot
Match: ORN_HUMAN (Oligoribonuclease, mitochondrial OS=Homo sapiens GN=REXO2 PE=1 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 5.999e-47
Identity = 90/177 (50.85%), Postives = 119/177 (67.23%), Query Frame = 3
Query:  234 LVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKTNL 764
            +VW+DLEMTGL+IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLTK V  S +T ++AE + + FV++        LAGNSV+ D  FL KYMP       + ++DVS++K LC RWYP +Y   P K   HRALDDI ESI EL++Y+ NIFK  +
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKI 219          
BLAST of DY306069 vs. ExPASy Swiss-Prot
Match: ORN_RAT (Oligoribonuclease, mitochondrial OS=Rattus norvegicus GN=Rexo2 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 7.835e-47
Identity = 90/174 (51.72%), Postives = 118/174 (67.82%), Query Frame = 3
Query:  234 LVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 755
            +VW+DLEMTGL+IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLTK V  S +T ++AE + + FV++        LAGNSV+ D  FL K+MP       + ++DVS++K LC RWYP DY   P K   HRALDDI ESI EL++Y+ NIFK
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMKHLHYRIIDVSTVKELCRRWYPEDYEFAPKKAASHRALDDISESIKELQFYRNNIFK 216          
BLAST of DY306069 vs. ExPASy Swiss-Prot
Match: ORN_MOUSE (Oligoribonuclease, mitochondrial OS=Mus musculus GN=Rexo2 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 7.835e-47
Identity = 90/174 (51.72%), Postives = 118/174 (67.82%), Query Frame = 3
Query:  234 LVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 755
            +VW+DLEMTGL+IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLTK V  S +T ++AE + + FV++        LAGNSV+ D  FL K+MP       + ++DVS++K LC RWYP DY   P K   HRALDDI ESI EL++Y+ NIFK
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMKHLHYRIIDVSTVKELCRRWYPEDYEFAPKKAASHRALDDISESIKELQFYRNNIFK 216          
BLAST of DY306069 vs. ExPASy Swiss-Prot
Match: ORN_DROME (Probable oligoribonuclease OS=Drosophila melanogaster GN=CG10214 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.208e-41
Identity = 85/174 (48.85%), Postives = 110/174 (63.22%), Query Frame = 3
Query:  234 LVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 755
            +VW+DLEMTGL+IE D+ILE+ACIITD  L    EGP   I+  +E  DSM EWC  HH  SGL  +   S +   EA   V+ +++KN+      L GNSVY D +F+ K+MP + +   + +VDVS+IK L  RW+P      P K   HR+LDDIRESI EL YYK N+FK
Sbjct:   38 IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDSMNEWCMKHHYNSGLIDRCKSSDVNLEEASNLVLSYLEKNIPKRACPLGGNSVYTDRLFIMKFMPLVDAYLHYRIVDVSTIKELAKRWHPAILDSAPKKSFTHRSLDDIRESIKELAYYKANLFK 211          
BLAST of DY306069 vs. ExPASy Swiss-Prot
Match: ORN_PASMU (Oligoribonuclease OS=Pasteurella multocida GN=orn PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.431e-40
Identity = 93/181 (51.38%), Postives = 117/181 (64.64%), Query Frame = 3
Query:  225 KMPLVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFKTNLK 767
            K  L+WIDLEMTGL+ E +RI+EIA I+TD  L    EGP L IHQ+ ECL  M +WC   H  +GL ++V +S LTER AE Q ++F+KK V      + GNSV  D  FL KYMP+LA  F +  +DVS++K L  RW P D  K  +K+  H ALDDIRESI EL YY+E+    NLK
Sbjct:    5 KQNLIWIDLEMTGLDPESERIIEIATIVTDKHLNILAEGPVLAIHQSDECLAKMNDWCMKTHTENGLVERVKNSRLTERAAELQTLDFLKKWVPKGVSPICGNSVSQDKRFLFKYMPELADYFHYRHLDVSTLKELASRWKP-DVLKGFTKKNTHLALDDIRESIAELAYYREHFI--NLK 182          
BLAST of DY306069 vs. ExPASy Swiss-Prot
Match: ORN_HAEIG (Oligoribonuclease OS=Haemophilus influenzae (strain PittGG) GN=orn PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.188e-40
Identity = 89/177 (50.28%), Postives = 114/177 (64.41%), Query Frame = 3
Query:  225 KMPLVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 755
            K  L+WIDLEMTGL+ E +RI+EIA I+TD  L    EGP L +HQ+ E L+ M +WCQ  H  +GL ++V  S LTER AE Q ++F+KK V      + GNS+  D  FL KYMPDLA  F +  +DVS++K L  RW P +  +   KE  H ALDDIRESI EL YY+E+  K
Sbjct:    5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKP-EILEGFKKENTHLALDDIRESIKELAYYREHFMK 180          
BLAST of DY306069 vs. ExPASy Swiss-Prot
Match: ORN_HAEIE (Oligoribonuclease OS=Haemophilus influenzae (strain PittEE) GN=orn PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.188e-40
Identity = 89/177 (50.28%), Postives = 114/177 (64.41%), Query Frame = 3
Query:  225 KMPLVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 755
            K  L+WIDLEMTGL+ E +RI+EIA I+TD  L    EGP L +HQ+ E L+ M +WCQ  H  +GL ++V  S LTER AE Q ++F+KK V      + GNS+  D  FL KYMPDLA  F +  +DVS++K L  RW P +  +   KE  H ALDDIRESI EL YY+E+  K
Sbjct:    5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKP-EILEGFKKENTHLALDDIRESIKELAYYREHFMK 180          
BLAST of DY306069 vs. ExPASy Swiss-Prot
Match: ORN_HAEI8 (Oligoribonuclease OS=Haemophilus influenzae (strain 86-028NP) GN=orn PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.188e-40
Identity = 89/177 (50.28%), Postives = 114/177 (64.41%), Query Frame = 3
Query:  225 KMPLVWIDLEMTGLNIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTKKVLHSGLTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMRWYPRDYRKVPSKEQKHRALDDIRESIMELKYYKENIFK 755
            K  L+WIDLEMTGL+ E +RI+EIA I+TD  L    EGP L +HQ+ E L+ M +WCQ  H  +GL ++V  S LTER AE Q ++F+KK V      + GNS+  D  FL KYMPDLA  F +  +DVS++K L  RW P +  +   KE  H ALDDIRESI EL YY+E+  K
Sbjct:    5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDWCQKTHSENGLIERVKASKLTERAAELQTLDFLKKWVPKGASPICGNSIAQDKRFLVKYMPDLADYFHYRHLDVSTLKELAARWKP-EILEGFKKENTHLALDDIRESIKELAYYREHFMK 180          
The following BLAST results are available for this feature:
BLAST of DY306069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_ARATH2.497e-7760.41Oligoribonuclease OS=Arabidopsis thaliana GN=At2g2... [more]
ORN_BOVIN4.593e-4751.72Oligoribonuclease, mitochondrial OS=Bos taurus GN=... [more]
ORN_HUMAN5.999e-4750.85Oligoribonuclease, mitochondrial OS=Homo sapiens G... [more]
ORN_RAT7.835e-4751.72Oligoribonuclease, mitochondrial OS=Rattus norvegi... [more]
ORN_MOUSE7.835e-4751.72Oligoribonuclease, mitochondrial OS=Mus musculus G... [more]
ORN_DROME2.208e-4148.85Probable oligoribonuclease OS=Drosophila melanogas... [more]
ORN_PASMU1.431e-4051.38Oligoribonuclease OS=Pasteurella multocida GN=orn ... [more]
ORN_HAEIG3.188e-4050.28Oligoribonuclease OS=Haemophilus influenzae (strai... [more]
ORN_HAEIE3.188e-4050.28Oligoribonuclease OS=Haemophilus influenzae (strai... [more]
ORN_HAEI83.188e-4050.28Oligoribonuclease OS=Haemophilus influenzae (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3BG10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306069 ID=DY306069; Name=DY306069; organism=Citrus sinensis; type=EST; length=1248bp
GGTGAGGAGACCAATCAGTGAAGATGGATGGACTCTCAAATGCATTCTCT
GTGTTAGAGCTGGACGCTGACGACAGTCAAGTCAAAACGCCTGCTGCTGC
TTCTTCTTCCTCTTCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAA
GCAAAGCAAACAGCTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCT
CAGACTCCCTTGGAATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTT
GGAAATGACAGGTTTGAATATTGAAGTTGATCGAATACTGGAGATTGCTT
GCATAATTACTGATGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTG
GTTATCCATCAAACTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCA
AAATCATCATGAAGCTAGTGGATTGACAAAAAAGGTGCTTCATAGTGGCC
TGACTGAAAGAGAAGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAAT
GTTGGTACATACACTCCTCTTCTTGCAGGGAATTCAGTATACGTGGATTT
TATGTTCTTAAAGAAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATG
TACTTGTCGATGTTAGCAGTATCAAGGCTTTATGTATGCGCTGGTATCCT
AGAGATTACAGGAAAGTTCCTTCAAAAGAACAGAAACACAGAGCCTTGGA
TGATATCAGAGAAAGCATCATGGAACTCAAGTACTACAAGGAGAATATAT
TTAAAACAAATTTGAAAAAGTGATGGCAATACAATACAGATTTGATTTTA
GGGGTATTCCTTTTCTTCCACGCCCTTCTAAGTCCCAGCTTTTTGCCTCT
AGGTTTTTGAAATAAGGGGCTATTTTTTTGTAATTACCATCTTTTCTTTA
AAAATTCCAAGTGAGTGCATGAAGTCTCGCCTTGAGCCCTATTTAACTAG
GTTAAATTTGCCCTAAAATTTATTTTATTCAATTTGGTTTTTCCCCCTCT
TGTTTAAAAAAAAAAAAAAAAAAATCCGAAGGGGGGGCCCCGGGGACCCC
AATCTTCCCCCTTAAAATGAGATTCCAAAAAAAAAATTTCTCCCGGGCCC
GTCCCTTTTTCAAAAACCTCCCTTAACCCTGGGGAAAAACCCCCCTTCGC
GCTTTCTCCCCACATTTTTTAATCCCCTCCTCTTTTCCACCCCACCCCCC
CCCCCTTCTTTCCTCTCCCCCCCCTCGCCCGCGGGTGCGCGCGATAAT
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