DY306060

Overview
NameDY306060
Unique NameDY306060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1255
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306060 vs. ExPASy Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 6.213e-76
Identity = 138/159 (86.79%), Postives = 143/159 (89.94%), Query Frame = 1
Query:   76 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGANKAFKAM 552
            MAEQTEKAFLKQPKVFL+S             NRFWKSIGLGFKTPREAI+GTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG  KAF A+
Sbjct:    1 MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159          
BLAST of DY306060 vs. ExPASy Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 1.530e-74
Identity = 138/159 (86.79%), Postives = 140/159 (88.05%), Query Frame = 1
Query:   76 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGANKAFKAM 552
            MAEQTEKAFLKQPKVFLS+             NRFWKSIGLGFKTPREAIEGTYIDKKCPFTG VSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAHISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS GA KAF  M
Sbjct:    1 MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159          
BLAST of DY306060 vs. ExPASy Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.999e-74
Identity = 137/158 (86.71%), Postives = 140/158 (88.61%), Query Frame = 1
Query:   76 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGANKAFKA 549
            MAEQTEKAFLKQPKVFLSS             NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS+    KAF A
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158          
BLAST of DY306060 vs. ExPASy Swiss-Prot
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 1.213e-71
Identity = 132/156 (84.62%), Postives = 136/156 (87.18%), Query Frame = 1
Query:   76 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGANKAF 543
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAI+G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S    KAF
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAF 156          
BLAST of DY306060 vs. ExPASy Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 3.528e-71
Identity = 132/160 (82.50%), Postives = 138/160 (86.25%), Query Frame = 1
Query:   76 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG-ANKAFKAM 552
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAI+G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSS     KAF  M
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160          
BLAST of DY306060 vs. ExPASy Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 1.751e-70
Identity = 131/159 (82.39%), Postives = 137/159 (86.16%), Query Frame = 1
Query:   76 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGANKAFKAM 552
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREAIEGTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLHFVKKY+RYEKRHSNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIPAGSS    KAF  M
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159          
BLAST of DY306060 vs. ExPASy Swiss-Prot
Match: RS11_DUNTE (40S ribosomal protein S11 OS=Dunaliella tertiolecta GN=RPS11 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.377e-51
Identity = 101/151 (66.89%), Postives = 119/151 (78.81%), Query Frame = 1
Query:   76 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP-AGSSG 525
            MAEQTEKAF KQ  V                 +RF+K++GL FKTP+EAI+G Y+DKKCPFTG VSIRGRIL G   S+KM RTIIVRR+YLHF+ KY RYEKRH+NIPAH+SPCFRV++GD VIIGQCRPLSKT+RFNVL+VIP AG++G
Sbjct:    1 MAEQTEKAFQKQVGV-TGCFKSKEKKAPGKSGHRFFKNVGLNFKTPKEAIDGNYVDKKCPFTGNVSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIPQAGATG 150          
BLAST of DY306060 vs. ExPASy Swiss-Prot
Match: RS11_XENLA (40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.763e-46
Identity = 90/155 (58.06%), Postives = 113/155 (72.90%), Query Frame = 1
Query:   85 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGANKAFK 546
            QTE+A+ KQP +F +               R+++S+GLGFKTPREAI+GTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G  K F+
Sbjct:    5 QTERAYQKQPTIFQNKKRVLEGETGKEKLPRYYRSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGDTVTVGECRPLSKTVRFNVLKVTKA---AGTKKQFQ 156          
BLAST of DY306060 vs. ExPASy Swiss-Prot
Match: RS11_RAT (40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 2.303e-46
Identity = 91/155 (58.71%), Postives = 113/155 (72.90%), Query Frame = 1
Query:   85 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGANKAFK 546
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G  K F+
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQFQ 156          
BLAST of DY306060 vs. ExPASy Swiss-Prot
Match: RS11_MOUSE (40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=2 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 2.303e-46
Identity = 91/155 (58.71%), Postives = 113/155 (72.90%), Query Frame = 1
Query:   85 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGANKAFK 546
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G  K F+
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQFQ 156          
The following BLAST results are available for this feature:
BLAST of DY306060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_EUPES6.213e-7686.7940S ribosomal protein S11 OS=Euphorbia esula GN=RP... [more]
RS11_SOYBN1.530e-7486.7940S ribosomal protein S11 OS=Glycine max GN=RPS11 ... [more]
RS11_MAIZE1.999e-7486.7140S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=... [more]
RS113_ARATH1.213e-7184.6240S ribosomal protein S11-3 OS=Arabidopsis thalian... [more]
RS111_ARATH3.528e-7182.5040S ribosomal protein S11-1 OS=Arabidopsis thalian... [more]
RS112_ARATH1.751e-7082.3940S ribosomal protein S11-2 OS=Arabidopsis thalian... [more]
RS11_DUNTE2.377e-5166.8940S ribosomal protein S11 OS=Dunaliella tertiolect... [more]
RS11_XENLA1.763e-4658.0640S ribosomal protein S11 OS=Xenopus laevis GN=rps... [more]
RS11_RAT2.303e-4658.7140S ribosomal protein S11 OS=Rattus norvegicus GN=... [more]
RS11_MOUSE2.303e-4658.7140S ribosomal protein S11 OS=Mus musculus GN=Rps11... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3BF11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306060 ID=DY306060; Name=DY306060; organism=Citrus sinensis; type=EST; length=1255bp
GGTTTTCTGCATTGTGTTAGCCACCTCCGCCCAGTGCGTTCATCATCCTC
AACAACTCAGCCCCGAAATCCAGCCATGGCGGAGCAGACCGAGAAGGCGT
TTTTGAAGCAGCCCAAGGTGTTTCTCAGCTCGAAGAAGGCAGGAAAAGGA
AAGAGGCCAGGAAAGGGAGGGAATCGATTCTGGAAGAGCATAGGCTTGGG
ATTCAAGACTCCCAGAGAGGCAATTGAAGGGACTTACATCGATAAGAAGT
GTCCGTTCACCGGCACTGTTTCCATCAGGGGTCGTATCCTTGCTGGTACT
TGCCACAGTGCTAAGATGAACAGAACCATCATCGTTAGGCGTAACTACCT
TCACTTTGTGAAGAAATATCAGAGGTATGAGAAGAGGCACTCTAACATTC
CAGCACACATCTCACCTTGTTTCCGTGTGAAAGAGGGAGACCATGTTATC
ATTGGCCAGTGCAGGCCTTTGTCGAAGACGGTCAGGTTTAATGTCTTGAA
AGTGATACCTGCTGGCTCTTCTGGTGGTGCAAACAAGGCTTTCAAGGCGA
TGTGAGGTGGAATCGACAATTATCAACTTCACAGTTAGGCCTTTTGGCGT
CCAAGGTACTGAGTTACTCGGCTTTTGCTATGGAGGAGTTTGTCATTGCC
TCCGCGCATAGAGGTCTAAAAAAAGATAAATTAATAAGGGACGAAGTCGG
GATATTGCCAACTCCCCAGGGGGAGAAACCNGCCCTCNTTTGGAAGTATA
GGCATGGAGGTATGGNCANAGACCTGGACCAGATTGTGGTATTGAGGGGG
GGAAGCTGATACGCNATGNCGTAGTGAGAGCCCTCAAAGTAATGCNNAAN
ATGGGGTAAGGAGGGTGGAGAGCGCTCCAAGGTGGGANACGCAGATTGTG
ATAAAGCTTACNTTAAGTATGGANGTATATCCGACATAAAGCATGAGTAA
AGTAACTTTCTATAAGGAAGANTCAGCCAGCGGTCACCTCCAATTGTACA
GCGAAGTAAAAGCGAATAAAAAAGTNTGTCGAANGANNAAAATCAAGNCA
ACGAAGGGGGGGAAAAAAGACCGTAAAGNGNGTANAAAAGANAGTACATG
CGTGGACAAGATNCTATAGGGGACCGCACAAGACAAGCGGTTGGGCGAAA
ACAAAAGGGCAGGAGAGTACTTGGCGACATGATAGATAGAGAGCACGACT
GCTAACTGTANATTGAGCAAGATAAGAAGCATGACGATCATGGAGGTGCA
CTGCT
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