DY306056

Overview
NameDY306056
Unique NameDY306056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length986
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306056 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.387e-15
Identity = 77/250 (30.80%), Postives = 105/250 (42.00%), Query Frame = 1
Query:   31 ASPKAFSKMTNLRLLKIC--------GLQLPQGLEHFSNNLRLLDWHGYPWKSLPSNLQLDKTVEFKMCYSCIEELWKGIKVRSMFLLH*NH*KL*ISLAASNLKMCQRRLGK*KVWKNLI*AEQL*DDLHPHLMDNLXTLSFFGCNG-PPLAASWHLFLPFNLMGKSSCPVDLMLPSLSGLCSLTKLDLSDC-------------------GLGEGAIPSEIGNLLSLNELYLKKNKFV-TLPTSIYSL 693
            A+P  F KM NLRLLK+         G+  PQGLE+  + LRLL W  YP  SLP +   +  VE  +  SC ++LWKG K R              +  +S  K+ + RL           ++QL          NL  +   GCN    L+ S         +    C     +PS+  L SL  L+LS C                   G     IPS I NL+ L +L L+ ++ +  LPTSIY L
Sbjct: 1167 ANPNVFEKMCNLRLLKLYCSKAEEKHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARF------------CTTNSSLEKLKKMRLSY---------SDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKL 1395          
BLAST of DY306056 vs. ExPASy Swiss-Prot
Match: WRK52_ARATH (Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3)

HSP 1 Score: 63.5438 bits (153), Expect = 1.235e-12
Identity = 41/95 (43.16%), Postives = 49/95 (51.58%), Query Frame = 1
Query:   37 PKAFSKMTNLRLLKI-CG-------LQLPQGLEH-FSNNLRLLDWHGYPWKSLPSNLQLDKTVEFKMCYSCIEELWKGIK----VRSMFLLH*NH 282
            P AF  M NLRLLKI C        +  P G  H   N LRLL W  YP KSLP N      VE  M YS +++LW G K    +R++ L H +H
Sbjct:  517 PSAFKNMLNLRLLKIYCSNPEVHPVINFPTGSLHSLPNELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHH 611          

HSP 2 Score: 30.4166 bits (67), Expect = 1.235e-12
Identity = 17/45 (37.78%), Postives = 27/45 (60.00%), Query Frame = 3
Query:  273 LKSLKTLNLSGCFKLENVPETLGQVESLEELDISGTAIRRPPSSS 407
            L  L+ +NLSGC K+++V E      ++E+L + GT I   P S+
Sbjct:  644 LLRLRVVNLSGCIKIKSVLEI---PPNIEKLHLQGTGILALPVST 685          
The following BLAST results are available for this feature:
BLAST of DY306056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRK19_ARATH4.387e-1530.80Probable WRKY transcription factor 19 OS=Arabidops... [more]
WRK52_ARATH1.235e-1243.16Probable WRKY transcription factor 52 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3BF06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306056 ID=DY306056; Name=DY306056; organism=Citrus sinensis; type=EST; length=986bp
GACTTTCTCCAAGATAAGGTGTATTTAAGTGCTAGTCCGAAAGCATTTTC
AAAGATGACCAACCTACGATTGCTCAAAATCTGTGGGCTGCAACTTCCTC
AAGGCCTTGAACACTTCTCTAACAACTTGCGGTTACTTGATTGGCATGGA
TATCCTTGGAAATCTTTGCCATCAAATTTGCAATTGGATAAAACTGTGGA
GTTTAAAATGTGTTACAGCTGCATTGAAGAATTATGGAAAGGAATCAAAG
TAAGATCAATGTTTTTGCTGCATTGAAATCACTAAAAACTTTGAATCTCT
CTGGCTGCTTCAAACTTGAAAATGTGCCAGAGACGCTTGGGCAAGTAGAA
AGTTTGGAAGAACTTGATATAAGCGGAACAGCTATAAGACGACCTCCATC
CTCATCTTATGGACAATCTTANAACACTCTCTTTTTTTGGGTGCAATGGA
CCACCATTAGCTGCATCATGGCATTTGTTCCTTCCCTTCAATTTGATGGG
AAAGAGTTCATGTCCTGTGGATTTAATGTTGCCTTCTCTGTCAGGTTTGT
GCTCTTTAACAAAATTAGATCTCAGTGACTGTGGTCTAGGGGAAGGAGCA
ATCCCGAGTGAAATTGGCAACTTACTCTCATTAAACGAGTTGTATCTGAA
GAAAAACAAATTTGTAACGCTGCCAACAAGTATTTACAGTCTTTTTAATC
TCTAAAACCTANTGTTGGAAAAATTGGAAAAGGTTTAAATTCGGCAACAA
ATTCATCTACACAAAACAGAGTATCATTAATGGGGAGGTCTCCCCGGTGN
CNTTNCTAGTTGGTTATAAACCNGGTTANNCNAANCTAAAAAAGANCAAT
AGGTTATAATACTNCGACNTNGNNGGGAAAAAACGAATTAGTTTATAANT
AAAAACCAAANAAGCTGANGAGAAATTTCCANTNTGTTTATACANCGTAA
CANNAATAAGGNAGGGAAANGATGAANAAGAGNNGA
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