DY306053

Overview
NameDY306053
Unique NameDY306053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1111
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 1.138e-86
Identity = 158/207 (76.33%), Postives = 177/207 (85.51%), Query Frame = 1
Query:    1 VEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            VEVF+ FY+TKTKHRKLTWIYSLGTC++ GKF+ +  ELIV+TYQA+ LLLFN++D+LSY+EI+ QLNLS +D+VRLLHSLSCAKYKIL KEPNTKT+S  D FEFNSKFTD+MRRIKIPLPP              RRYAIDA+IVRIMKSRKVLGHQQLV ECVEQL RMFKPD KAIKKR+EDLITRDYLERDK NPNMFRYLA
Sbjct:  532 VEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 2.252e-34
Identity = 88/210 (41.90%), Postives = 111/210 (52.86%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKI----PLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            EVF+ FY  K   RKL W  +LG   L  +F+    E  V+ +Q   LL+FN  D  S+ EI     + D ++ R L SL+C K ++L K P  K +   D F FN +F  K+ RIKI                      R+Y IDA+IVRIMK RK LGH  LV E   QL    KP    +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct:  552 EVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHYVA 759          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.907e-33
Identity = 87/210 (41.43%), Postives = 109/210 (51.90%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKI----PLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            E+F+ FY  K   RKL W  +LG C L  +F+    EL V+ +Q   LL+FN  +  S  EI     + D ++ R L SL+C K ++L K P  K I   D F  N  F  K+ RIKI                      R+Y IDA+IVRIMK RK L H  LV E   QL    KP    +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct:  688 EIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDKENPNQYNYIA 895          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.907e-33
Identity = 87/210 (41.43%), Postives = 110/210 (52.38%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKI----PLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            EVF+ FY  K   RKL W  +LG   L   F+    E  V+ +Q   LL+FN  D  S+ EI     + D ++ R L SL+C K ++L K P  K +   D F FN+ F  K+ RIKI                      R+Y IDA+IVRIMK RK LGH  LV E   QL    KP    +KKRIE LI RDY+ERDK +PN + Y+A
Sbjct:  552 EVFKTFYLGKHSGRKLQWQTTLGHAVLKADFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNADFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDSPNQYHYVA 759          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.511e-30
Identity = 80/216 (37.04%), Postives = 114/216 (52.78%), Query Frame = 1
Query:    1 VEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNS---SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIP------LPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            ++ F +FY +K   RKL W  S+G+ ++   F+ R  +L V+T  +  LLLF     +  L + EI+ + N+   D+ R L SL+CAKYKIL K+P  + ++  D F FN  F   + RIKI       +                R++  DA IVR+MK RKV  H QL+ E   QL   F P    IK+RIE LI R+YL+R   N  ++ YLA
Sbjct:  570 IDQFTDFYLSKHTGRKLLWYPSMGSADVRVNFKDRKYDLNVSTIASVILLLFQDLKENQCLIFEEILEKTNIEVGDLKRNLQSLACAKYKILLKDPKGREVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.197e-27
Identity = 82/244 (33.61%), Postives = 121/244 (49.59%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE-PNT---------------------------------KTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            E F+ +Y +    R L W  ++GT  +   F S++ EL V++YQ   LLLFN   +L++ EI  Q  +   D+ R L +L+  K KIL++E P+T                                 K+I  +D F FN+KF  K+ R+K+                      R++ I+ASIVRIMK+RK L H  LV E ++QL   F P+   +KKRIE LI R+YLER K +  ++ Y+A
Sbjct:  526 EAFKSYYLSNHNGRLLLWQTNMGTAEIKANFPSKSHELQVSSYQMVILLLFNDQSKLTFKEIADQTGIPTIDLKRNLLALTNPKNKILDRELPSTTSSTTTTTTTATSSSTSTSPSSSSSSISTPTPSKSIDESDVFAFNTKFKSKLFRVKVMAVVQKETPVEEKETRDKVDEDRKHQIEASIVRIMKARKTLEHSNLVSEVIKQLQSRFVPNPVIVKKRIESLIEREYLERSKQDRKIYNYMA 769          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.549e-27
Identity = 79/236 (33.47%), Postives = 118/236 (50.00%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKF----------------------ESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAK--YKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL------PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            E+FR FY  K   R+LT  + +G+ +L   F                       +R   L V+T+Q + L+LFN+ D+ ++ EI  + ++ + ++VR L SL+C K   ++L KEP +K I     F  N +FT K+ R+KI                        R++ I+A+IVRIMKSRK + H  LV E  +QL   F P    IKKRIE LI R+YL R   +  ++ Y+A
Sbjct:  533 EIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNRDKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.324e-26
Identity = 78/236 (33.05%), Postives = 118/236 (50.00%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKF----------------------ESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAK--YKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL------PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            E+FR FY  K   R+LT  + +G+ +L   F                       +R   L V+T+Q + L+LFN+ ++ ++ EI  + ++ + ++VR L SL+C K   ++L KEP +K I     F  N +FT K+ R+KI                        R++ I+A+IVRIMKSRK + H  LV E  +QL   F P    IKKRIE LI R+YL R   +  ++ Y+A
Sbjct:  533 EIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.324e-26
Identity = 78/236 (33.05%), Postives = 118/236 (50.00%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKF----------------------ESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAK--YKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL------PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            E+FR FY  K   R+LT  + +G+ +L   F                       +R   L V+T+Q + L+LFN+ ++ ++ EI  + ++ + ++VR L SL+C K   ++L KEP +K I     F  N +FT K+ R+KI                        R++ I+A+IVRIMKSRK + H  LV E  +QL   F P    IKKRIE LI R+YL R   +  ++ Y+A
Sbjct:  533 EIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGAVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.729e-26
Identity = 78/236 (33.05%), Postives = 118/236 (50.00%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKF----------------------ESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAK--YKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL------PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            E+FR FY  K   R+LT  + +G+ +L   F                       +R   L V+T+Q + L+LFN+ ++ ++ EI  + ++ + ++VR L SL+C K   ++L KEP +K I     F  N +FT K+ R+KI                        R++ I+A+IVRIMKSRK + H  LV E  +QL   F P    IKKRIE LI R+YL R   +  ++ Y+A
Sbjct:  533 EIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
The following BLAST results are available for this feature:
BLAST of DY306053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CUL1_ARATH1.138e-8676.33Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL4A_HUMAN2.252e-3441.90Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4B_HUMAN1.907e-3341.43Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL4A_MOUSE1.907e-3341.43Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL3_SCHPO1.511e-3037.04Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]
CUL3_DICDI1.197e-2733.61Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL3A_XENLA4.549e-2733.47Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_XENTR1.324e-2633.05Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3B_XENLA1.324e-2633.05Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3_MOUSE1.729e-2633.05Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3BF03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306053 ID=DY306053; Name=DY306053; organism=Citrus sinensis; type=EST; length=1111bp
GTTGAAGTTTTTAGGGAATTCTATCAAACAAAAACAAAGCATAGGAAACT
TACATGGATCTACTCACTGGGTACTTGTAACCTCCTTGGAAAATTTGAAT
CAAGAACTACAGAGTTGATTGTCACAACCTATCAGGCTTCTGCGTTGCTT
TTATTCAATTCCTCAGATAGGCTGAGTTATTCAGAGATCATGACGCAGTT
GAACTTGTCCGACGATGATGTTGTTAGATTGCTTCATTCCTTGTCATGTG
CAAAATATAAGATTCTCAACAAAGAGCCAAATACAAAAACCATCTCTCCT
ACTGATCACTTTGAGTTCAATTCCAAGTTTACCGACAAAATGAGGAGAAT
CAAGATTCCTCTCCCTCCTGTGGATGAGAAAAAGAAGGTTATTGAAGATG
TTGATAAGGACAGACGATATGCCATTGATGCCTCAATTGTGCGCATTATG
AAAAGTCGGAAAGTTTTGGGGCACCAACAATTGGTATTGGAGTGTGTCGA
GCAGTTGGGCCGCATGTTCAAGCCTGATTTCAAGGCAATCAAAAAGAGGA
TTGAAGATCTTATCACTCGAGACTATCTCGAGAGGGACAAATCTAATCCC
AATATGTTCAGGTACTTGGCGTGATCTAGAGTGGTTGGTAATCCAGATGA
AGTGGTGACATTTGCTGCCCACAAAGAGGGTTAGTTCATGGTGGAACTGG
GACAAACATATGTAAACCGCCGCCAGGAGTGCCTTGTCTGGGGATTGCTC
AGAAGCAGAGCTGCGATGCTTGTACATTTTGCTGTTGGGCCAGGTGTGAG
GAACAAGTATAAATTTCCAAACCATGTTTGAGAAAAAGTTAATCCTTCCT
TAATGTGGTTCAGTGCCACGAGAAACAATGCTGTTCTGTCTCCTTATTCT
GCAATCCCATTTTCCGGCTTGATGTTTGTTTGGGAATTCCCCTTCCTTTT
CCTTTAAAATTTCCCTTTCCCCAAAAAATATTTAACTTTAAATCCAACCA
AAATTGTTGTTTTGTATTTTGAAATTAATAAAAAAATTTCCGGGGGGAAA
AATCTCCCCAACAAAGCGGACTTTTTATGCTCCCTTTTTTTAAATTCCGT
TTTTAAAAGGC
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