DY306052

Overview
NameDY306052
Unique NameDY306052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1263
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306052 vs. ExPASy Swiss-Prot
Match: Y1390_ARATH (Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.303e-20
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 3
Query:    3 ENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGEL-HPVEPVIDSSRYFVLRIEENIGGRLKHAIIDSLFWQRRES*DCQASLPE 389
            E EE E  E  L  V E  VY IPPR ++  Y+  EW  +   W G L+VVS  + C I+LED ++G+L+A  F+  G   + VEP +DSSRYFVLRI++   GR K+A I   F +R E+ D   +L +
Sbjct:    5 EEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDD---GRGKYAFIGLGFAERNEAFDFNVALSD 131          
BLAST of DY306052 vs. ExPASy Swiss-Prot
Match: NECP2_RAT (Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus GN=Necap2 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.261e-17
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 3
Query:    9 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLKHAIIDSLFWQRRES*DCQASLPE 389
            EE+E  E VL    E +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A + +     VE V DSSRYFV+RIE+  G R   A I   F  R ++ D   +L +
Sbjct:    2 EESE-YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRR---AFIGIGFGDRGDAFDFNVALQD 124          
BLAST of DY306052 vs. ExPASy Swiss-Prot
Match: NECP2_MOUSE (Adaptin ear-binding coat-associated protein 2 OS=Mus musculus GN=Necap2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.261e-17
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 3
Query:    9 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLKHAIIDSLFWQRRES*DCQASLPE 389
            EE+E  E VL    E +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A + +     VE V DSSRYFV+RIE+  G R   A I   F  R ++ D   +L +
Sbjct:    2 EESE-YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRR---AFIGLGFGDRGDAFDFNVALQD 124          
BLAST of DY306052 vs. ExPASy Swiss-Prot
Match: NECP2_HUMAN (Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens GN=NECAP2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.578e-17
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 3
Query:   12 ETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLKHAIIDSLFWQRRES*DCQASLPE 389
            E    E VL    + +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A + +     VE V DSSRYFV+RIE+  G R   A I   F  R ++ D   +L +
Sbjct:    2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRR---AFIGIGFGDRGDAFDFNVALQD 124          
BLAST of DY306052 vs. ExPASy Swiss-Prot
Match: NECP2_BOVIN (Adaptin ear-binding coat-associated protein 2 OS=Bos taurus GN=NECAP2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.592e-17
Identity = 53/127 (41.73%), Postives = 77/127 (60.63%), Query Frame = 3
Query:    9 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLKHAIIDSLFWQRRES*DCQASLPE 389
            EE E  E VL    + +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A + +     VE V DSSRYFV+RIE+  G R   A I   F  R ++ D   +L +
Sbjct:    2 EEAE-YESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRR---AFIGIGFGDRGDAFDFNVALQD 124          
BLAST of DY306052 vs. ExPASy Swiss-Prot
Match: NECP1_PONAB (Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.500e-16
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 3
Query:   27 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLKHAIIDSLFWQRRES*DCQASLPE 389
            E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GEL+A+A + +     VE V DSSRYFV+RI++  G   + A I   F  R ++ D   SL +
Sbjct:    8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQD 125          
BLAST of DY306052 vs. ExPASy Swiss-Prot
Match: NECP1_HUMAN (Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens GN=NECAP1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.500e-16
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 3
Query:   27 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLKHAIIDSLFWQRRES*DCQASLPE 389
            E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GEL+A+A + +     VE V DSSRYFV+RI++  G   + A I   F  R ++ D   SL +
Sbjct:    8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQD 125          
BLAST of DY306052 vs. ExPASy Swiss-Prot
Match: NECP1_RAT (Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus GN=Necap1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.264e-16
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 3
Query:   27 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLKHAIIDSLFWQRRES*DCQASLPE 389
            E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GEL+A+A + +     VE V DSSRYFV+RI++  G   + A I   F  R ++ D   SL +
Sbjct:    8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQD 125          
BLAST of DY306052 vs. ExPASy Swiss-Prot
Match: NECP1_MOUSE (Adaptin ear-binding coat-associated protein 1 OS=Mus musculus GN=Necap1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 4.264e-16
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 3
Query:   27 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLKHAIIDSLFWQRRES*DCQASLPE 389
            E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GEL+A+A + +     VE V DSSRYFV+RI++  G   + A I   F  R ++ D   SL +
Sbjct:    8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQD 125          
BLAST of DY306052 vs. ExPASy Swiss-Prot
Match: NECP1_BOVIN (Adaptin ear-binding coat-associated protein 1 OS=Bos taurus GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.264e-16
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 3
Query:   27 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLKHAIIDSLFWQRRES*DCQASLPE 389
            E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GEL+A+A + +     VE V DSSRYFV+RI++  G   + A I   F  R ++ D   SL +
Sbjct:    8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFSDRGDAFDFNVSLQD 125          
The following BLAST results are available for this feature:
BLAST of DY306052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
Y1390_ARATH8.303e-2043.08Uncharacterized protein At1g03900 OS=Arabidopsis t... [more]
NECP2_RAT2.261e-1742.52Adaptin ear-binding coat-associated protein 2 OS=R... [more]
NECP2_MOUSE2.261e-1742.52Adaptin ear-binding coat-associated protein 2 OS=M... [more]
NECP2_HUMAN6.578e-1740.48Adaptin ear-binding coat-associated protein 2 OS=H... [more]
NECP2_BOVIN8.592e-1741.73Adaptin ear-binding coat-associated protein 2 OS=B... [more]
NECP1_PONAB2.500e-1642.15Adaptin ear-binding coat-associated protein 1 OS=P... [more]
NECP1_HUMAN2.500e-1642.15Adaptin ear-binding coat-associated protein 1 OS=H... [more]
NECP1_RAT4.264e-1642.15Adaptin ear-binding coat-associated protein 1 OS=R... [more]
NECP1_MOUSE4.264e-1642.15Adaptin ear-binding coat-associated protein 1 OS=M... [more]
NECP1_BOVIN4.264e-1642.15Adaptin ear-binding coat-associated protein 1 OS=B... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3BF02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306052 ID=DY306052; Name=DY306052; organism=Citrus sinensis; type=EST; length=1263bp
GCGAGAACGAAGAAACTGAAGCTATAGAGTTTGTTCTCTTTCAAGTCTCG
GAATGTTACGTTTATTTGATACCCCCGAGGAAAAGTGCAGCTTCATACAG
GGCTGATGAATGGAATGTTAACAAATGGGCATGGGAGGGAATGCTAAAAG
TTGTCAGCAAGGGAGAAGAGTGCATTATCAAACTTGAAGATAAGTCCACA
GGTGAGTTATATGCTCGGGCATTTTTGAGAAAGGGTGAACTGCATCCAGT
GGAACCTGTGATTGATAGCAGCAGGTACTTTGTTCTTCGGATAGAGGAAA
ACATAGGTGGGCGCCTTAAGCATGCTATCATTGACAGCCTATTCTGGCAA
AGGAGAGAGTCTTAAGATTGCCAAGCCTCCCTGCCCGAGGACTGAACTAG
AAATGAGGACCAAAGATGACAAAACTTCATGCAATACTGTGTTGTTACTC
TTGAAGAGATGATCAAGTTTGCAAGTGGTGAGGCCCAGGTATATCACGTA
AAAGCGTGTCTCTCCCTACCATATTGATAACAATTGAAATAGGGGGGAAA
ACTGTGCCCTTCTGGTCCAGGAGACTGAGAAGGTTCATCCGGGGGGCGCA
CAATTCTCGAGAATAGGGACGAAGATGCCGAGGGAAAGTGGGCGGCCGCA
TATGAACATCAAGAGGAGTGGTTTTGGGAATCCTGATCGCCACTGATCCC
CAATTCAAATCACCCCCTGGTTGTTCTGGGATTCAATAGGGAAAAAAGGA
GGGATAGAGACCATGGGGGAACAAGAAGGCGGCGGCGCATGAGAAGATTT
GGGGAAAGGATTGTGGGAATCGAATTTCAAGCACGTGAATTTTTGATGAA
CCTGTGGGTAACGCTCAGACAAGTTATGCAATTTTCCCTAACATCTTGTA
CAAAAAAAAAACCGAAAAGCTCGATTTGTGGATGGTGGAGCTTATGCCCC
TGCCAGAAAAGGGTAGGAGGAAAAAATACCGATAGAAAGTAGGGGAGGGA
AGCAGAGATTTAAACGTCCCCGAGAAATAATATCACGGGGTATTGCATCG
ACTATTGTCTCTGAAAATTAACATGAAGTTCAAAAAAAAAAAAAGTAAGA
TCATAAATAAAAGAAAGAAATAACTTAAGCGCGGAAATCTCATCTCCATT
CTCCATATCTACCATCTCATGCATACTACGTCCTTGAAATCTAGTAAATA
AAATCAACACATTTAATATCATAGTTAATGACCACTCTAACCACATCGCA
CAATATGTATCCA
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