DY306046

Overview
NameDY306046
Unique NameDY306046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1267
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY306046_ssr270 microsatellite DY306046_ssr270:270..281. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.373e-22
Identity = 56/107 (52.34%), Postives = 67/107 (62.62%), Query Frame = 3
Query:   60 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            +GE AC YA LIL DDGIA+TAEKIA +VKAAN+++ESYWP+LFAKL EK+N++DLIL+VGS                                  SDDDMGFSLFD
Sbjct:    3 SGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILSVGSGGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.680e-18
Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = 3
Query:   63 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 245
            GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+
Sbjct:    5 GELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.500e-18
Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = 3
Query:   63 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 245
            GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+
Sbjct:    5 GELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGA 65          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.500e-18
Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = 3
Query:   63 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 245
            GE AC+YA +IL D+GIA+T++KIA LVKAA V+IESYWP LFAK+AEK+N+ DLI+NVG+
Sbjct:    5 GELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 65          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.278e-16
Identity = 46/105 (43.81%), Postives = 58/105 (55.24%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E ACTYA LILHDDG+ +TA+ I  + KAA V++E YWP+LFAKL  KK++DDLI NVG+                                   ++DMGFSLFD
Sbjct:    5 ELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITNVGA--GGGAAPAAAAPAAGGAPAAGAAPKKEEKKEPSEEEDMGFSLFD 107          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.376e-14
Identity = 47/107 (43.93%), Postives = 55/107 (51.40%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC YA+LIL DD +AVT EKI  ++KAANV++E YWP LFAK  E  N+ DLI N+GS                                    SDDDMGF LFD
Sbjct:    6 ELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_CAEEL (60S acidic ribosomal protein P1 OS=Caenorhabditis elegans GN=rla-1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.427e-13
Identity = 45/106 (42.45%), Postives = 53/106 (50.00%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC YA LIL DD +A+T EKIA L+KAANV+ E YWP LFAK  E  ++ +LI +V S                                   SDDDMGF LFD
Sbjct:    6 ELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA5_SCHPO (60S acidic ribosomal protein P1-alpha 5 OS=Schizosaccharomyces pombe GN=rpa5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.552e-13
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 3
Query:   60 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            A E A +YA LIL D+GI +T++K+ +L KA NV++E  W ++FAK  E K+L +L+LN+GS                                  SD+DMGF LFD
Sbjct:    3 ASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_CLAHE (60S acidic ribosomal protein P1 OS=Cladosporium herbarum GN=CLAH12 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.552e-13
Identity = 45/108 (41.67%), Postives = 56/108 (51.85%), Query Frame = 3
Query:   60 AGEQACTYATLILHDDGIAVTAEKIAALVKAANV-QIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            A E A +YA LIL D+G+ +TA+K+ AL+ AA V +IE  W SLFAK  E K++ DL+LNVGS                                  SDDDMGF LFD
Sbjct:    3 AAELASSYAALILADEGLEITADKLQALISAAKVPEIEPIWTSLFAKALEGKDVKDLLLNVGSGGGAAPAAGGAAAGGAAAVLDAPAEEKAEEEKEESDDDMGFGLFD 110          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_SCHPO (60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe GN=rpa1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.863e-13
Identity = 40/107 (37.38%), Postives = 56/107 (52.34%), Query Frame = 3
Query:   60 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            A E A +Y+ LIL D+GI +T++K+ +L KAANV +E  W ++FAK  E K+L +L+LN+GS                                  SD+DMGF LFD
Sbjct:    3 ASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109          
The following BLAST results are available for this feature:
BLAST of DY306046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA1_MAIZE1.373e-2252.3460S acidic ribosomal protein P1 OS=Zea mays GN=RPP... [more]
RLA11_ARATH2.680e-1870.4960S acidic ribosomal protein P1-1 OS=Arabidopsis t... [more]
RLA13_ARATH3.500e-1870.4960S acidic ribosomal protein P1-3 OS=Arabidopsis t... [more]
RLA12_ARATH3.500e-1868.8560S acidic ribosomal protein P1-2 OS=Arabidopsis t... [more]
RLA1_CHLRE4.278e-1643.8160S acidic ribosomal protein P1 OS=Chlamydomonas r... [more]
RLA1_DROME1.376e-1443.9360S acidic ribosomal protein P1 OS=Drosophila mela... [more]
RLA1_CAEEL4.427e-1342.4560S acidic ribosomal protein P1 OS=Caenorhabditis ... [more]
RLA5_SCHPO7.552e-1337.3860S acidic ribosomal protein P1-alpha 5 OS=Schizos... [more]
RLA1_CLAHE7.552e-1341.6760S acidic ribosomal protein P1 OS=Cladosporium he... [more]
RLA1_SCHPO9.863e-1337.3860S acidic ribosomal protein P1-alpha 1 OS=Schizos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM3BE07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306046 ID=DY306046; Name=DY306046; organism=Citrus sinensis; type=EST; length=1267bp
GACAAGCCAAACGCAGCCTCTCTTAGTGTGCGATTTTAGAATTATCAATT
GCAATAATGGCCGGAGAGCAAGCTTGCACCTACGCCACTTTGATTCTCCA
CGACGATGGAATCGCAGTCACTGCGGAGAAGATCGCGGCTTTGGTTAAGG
CAGCGAATGTGCAAATAGAGTCTTACTGGCCAAGCCTTTTTGCGAAGTTG
GCTGAAAAGAAAAACTTGGATGATCTCATCTTGAATGTTGGCTCCGGTGG
CGGTGCTGCCGCACCCGTTGCCGCCGCCGCCCCTGCTGGTGGTGCCGCAG
CCGCCGCCCCTGCCGCTGAGGAGAAAAAGGAAGAACCAAAGGAAGAAAGT
GATGATGATATGGGATTCAGTTTGTTTGATTAAACACCGCATTCAGTTGA
GTCAGAATTTGTTCTCTTCTTTTTTTTTTCCTGTTTTTGTTTTATTGGAA
TGTAGGACGCAGCTGAGTGGTATAGCTCAGTTTTTGTTTTTGTTTTAGTT
CTATTTCTCGCGGTGTACTTCGACAGTAAGTTTCTAATTACAAAATGAAT
ATTATCATTCTCTCAAGAACCAACCAAAAAAAAGAAAAAATTTAAAAAAA
AAAAAAAAAAAAACGGAAATTATATCCCCCGGGAGGGGGGCCCGGACCCC
TATTCCCCTATAATGGAGCCCCAATAACATTCCACGGGCCGCCCTTTATA
CCCCCCCGCTCGGGAAAAACCCGAGTTTTACCCCATTTAATCCTCCTCTT
GAACCACCCCCCCCTTTCCCCGGTGGGGATAAACGAAAAAAGCCCCCCCC
TATTCCCCTTCCCACTATTGGCCCCACCTCAAAGGGGTCAGAAGGAATAA
TTTATCCTAAACTTTTTTATTAAACTCACGTAAAATTTTTAAAAAAAACA
ACTCTTTTTTAAACTAAAGGACCAAAATTCGAAAAAACCCAAAAAAAAAA
AAAAAAAAAAACGAAAAGTAAATGTATAGTTTAATTTCTTTTTTTAATAT
TACAATATTTATATTATAAAATAAGTTTAAAACTAACACAAAGTAACGGA
ATTAAAATAAACTTCTTCAAGCATAGAATTCTTAATCAAATTCATCACTA
CTTATACACCTTATAATCTATTACTAATAAGCAATATTTTCTCCTCACCA
CAAATTCTCCGTACACACCCACAACTCTACACCCAGTCACCCTACACCAT
CCCCCCTACCATGCAATCACCACGATAACTATAAAAAGATAAGAGAAATC
ATCGTTAGACAGCAGCG
back to top