DY306035

Overview
NameDY306035
Unique NameDY306035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1258
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8924 contig Csv1_Contig8924:199..1456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY306035 vs. ExPASy Swiss-Prot
Match: CCD93_DICDI (Coiled-coil domain-containing protein 93 homolog OS=Dictyostelium discoideum GN=DDB_G0292680 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.280e-12
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = -2 
Query:  295 KHRQTQKYYVTYNALWGIKELMLKETSLLNSISSQFQDAIISTAGRMKLIDSMEKIAKGSQQKLEKVQVGLRAEQKTCDVIRERHAAAIAEQRRCHSLLKAFQEQCAKNERL 630
            K  +T++YY TYN     K L+  E S+LNSI S++  A+ ST  +   I SM++I  G QQ L+K +     E+   D + +++   + ++R  + L K F+E+C KNE L
Sbjct:  520 KLTETRQYYTTYNTFEDKKTLLENELSILNSIQSKYSIAMSSTNNKELFIKSMDQIIDGIQQVLDKSENKWNVEKVRHDTLSDQYMTLLDQERNYYKLTKDFEEECRKNELL 631
[Close]
BLAST of DY306035 vs. ExPASy Swiss-Prot
Match: CCD93_XENTR (Coiled-coil domain-containing protein 93 OS=Xenopus tropicalis GN=ccdc93 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.083e-11
Identity = 40/127 (31.50%), Postives = 68/127 (53.54%), Query Frame = -2 
Query:  286 KVFAFLYN-IQEKHRQTQKYYVTYNALWGIKELMLKETSLLNSISSQFQDAIISTAGRMKLIDSMEKIAKGSQQKLEKVQVGLRAEQKTCDVIRERHAAAIAEQRRCHSLLKAFQEQCAKNERLRSQ 663
            K F  LY  +   H++T++++  YN L   K  + KE +LLNSI   FQ A+ S + R + +  ME+I  G +Q   K++   +  +   D + + +   + +QR     +K F+E+C KNE L S+
Sbjct:  478 KRFIELYGQVSATHKETKQFFTLYNTLDDKKVYLEKEVNLLNSIHDNFQQAMASPSARDQFLRQMEQIVDGIRQSRNKMEKKKQENKMKRDQLNDEYLELLEKQRLYFKTVKEFKEECRKNETLLSK 604
[Close]
BLAST of DY306035 vs. ExPASy Swiss-Prot
Match: CCD93_CHICK (Coiled-coil domain-containing protein 93 OS=Gallus gallus GN=CCDC93 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.848e-11
Identity = 39/127 (30.71%), Postives = 69/127 (54.33%), Query Frame = -2 
Query:  286 KVFAFLYN-IQEKHRQTQKYYVTYNALWGIKELMLKETSLLNSISSQFQDAIISTAGRMKLIDSMEKIAKGSQQKLEKVQVGLRAEQKTCDVIRERHAAAIAEQRRCHSLLKAFQEQCAKNERLRSQ 663
            K F  LY+ +   H++T++++  YN L   K  + KE +LLNSI   F  A+ S+  R + +  ME+I +G +Q   K++   +  +   D + + +   + +QR     +K F+E+C KNE L S+
Sbjct:  485 KRFIELYSQVSATHKETKQFFTLYNTLDDKKVYLEKEVNLLNSIHDNFHQAMASSGSREQFLRQMEQIVEGIKQNRMKMEKKKQENKMRRDQLNDEYLELLEKQRLYFKTVKEFKEECRKNEMLLSK 611
The following BLAST results are available for this feature:
BLAST of DY306035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CCD93_DICDI1.280e-1235.71Coiled-coil domain-containing protein 93 homolog O... [more]
CCD93_XENTR1.083e-1131.50Coiled-coil domain-containing protein 93 OS=Xenopu... [more]
CCD93_CHICK1.848e-1130.71Coiled-coil domain-containing protein 93 OS=Gallus... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3BD02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306035 ID=DY306035; Name=DY306035; organism=Citrus sinensis; type=EST; length=1258bp
AACAATGAAATCCAGCTTTGTTTATTATTTAAATTTTGAGCTAGCAGTGA
TCACATGACATTTTGATTCATGACAACTATACAAATGAAGACAAAAGAAC
ATTAAACTCAAGGAAAAGCTAAAAAATATGTTAAAAAATGAAAAAGAAAG
GGAATTTTTTCATACACAGCAATTTGGAAGGTCAATCATCACTCCTTGAT
TCAACAGGTACACAATCTACACGAGGCATCGGTGATGCTCAAGTATCTTA
CTCCACATGGGACAGCAGTGTTTCTAAACAGAGCTTTGGCTCCGAAGTCT
CTCGTTCTTTGCACACTGTTCCTGAAAGGCTTTTAAGAGAGAATGGCAAC
GTCTCTGCTCGGCAATAGCTGCAGCATGCCTCTCTCTAATCACATCACAA
GTCTTCTGCTCTGCTCTCAATCCAACCTGTACCTTCTCCAGCTTCTGTTG
GCTGCCCTTTGCAATTTTCTCCATGGAATCAATTAGCTTCATGCGACCAG
CAGTGCTGATAATGGCATCTTGAAACTGTGAACTTATAGAATTCAACAAA
GAAGTTTCCTTTAACATCAACTCTTTGATCCCCCAAAGAGCATTATAGGT
AACATAGTATTTCTGGGTTTGACGATGTTTTTCCTGTATATTATAAAGAA
AAGCAAATACTTTTGTCACAAGTAGATATCAAAATAAACCACAAAAACCG
ATCAAAGAAATTTGCCTTCCTGACCTGAAAATGAACATACCGTTCCTGAA
ACCTGGCTTTCAACCTGCCAAAACCCAAAATAACTGGCCTCTTCCCCAAT
AAGCAAAAACCTGGAAAAGAAGTCCCACAACCATTAAATTCAAAAATAAG
GGGGATATCCCTGTGGGTTTCCCAACACAAGTGCAAAAAAACCCATAAGG
GCAAGAAAAATTTATAAAAAAAAACCACCNAGACAACCGTGCGGGGAGAT
TATAGAACCGAAAAATAGAAAAGAAAAGAGTGCCCGCAAAAACAACTATT
CACACTCCCTTTTTGAGGAAACAAGAGTGAGGTATTTTCGTATGACAGTA
ATAAACGTCCAGGCCACCAACGAAGAACCCGCAAGAGGGANTGAAGCATA
ACAACATGGTTCGTACATCGGGGCGAGGGGGACTGGCGCTCTCGTTTAGG
AAGGATGTAAGCTGCCGGTGCCAGTTGCGTGGCGAGTANTGNGTGAANAG
AGTCGCTGTTTGGCGGGATGCGGCGCGAGCAGTGCAAATGGNCGGAAGAT
CGACATNC
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