DY306027

Overview
NameDY306027
Unique NameDY306027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1276
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY306027_ssr759 microsatellite DY306027_ssr759:759..774. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY306027 vs. ExPASy Swiss-Prot
Match: EXLB1_ORYSJ (Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 5.428e-35
Identity = 68/111 (61.26%), Postives = 82/111 (73.87%), Query Frame = 3
Query:  414 VSCSYPYKNITIKIDEKSDYPHYLGFIIWYQQGKKDTTAVQLCETTNFACKLLDRSHGAVWTTTSPPSGPLSLRMLFSD-EDGDDESWVVPVNNIPQDWKAGKPYDTGVQV 743
            VSC+YP KNI  KI E S++P+YL F IWYQQG +D  AVQLCET N  C+LL R+HGAVW   SPPSGPLS+RMLFS       ++W+VP N +PQ+W AG  YD+GVQV
Sbjct:  143 VSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDIIAVQLCETVNLTCQLLSRTHGAVWAAVSPPSGPLSIRMLFSSGAPRGGDTWLVPTNIVPQNWTAGATYDSGVQV 253          

HSP 2 Score: 95.5153 bits (236), Expect = 7.146e-19
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 2
Query:    2 GACYQVRCLNSYYCSDRGATVVITDSGSGPNTDFILSRRAFGRMAQTKDAAAAILAHGVVNIEYRR 199
            GACYQVRC N YYCS  G T+VITDSG+   TDFILS+ AF RMAQ+ DA  A+L  GVV IEYRR
Sbjct:   77 GACYQVRCTNPYYCSPNGVTIVITDSGASDGTDFILSQHAFTRMAQSTDAGTALLTLGVVGIEYRR 142          
BLAST of DY306027 vs. ExPASy Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.390e-14
Identity = 38/111 (34.23%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  414 VSCSYPYKNITIKIDEKSDYPHYLGFIIWYQQGKKDTTAVQLCETTNFACKLLDRSHGAVWTTTSPPSGPLSLRMLFSDEDGDDESWVVPVNNI-PQDWKAGKPYDTGVQV 743
            V C Y ++++++++DE+S  P+ L     YQ G+ D  AV + +  + + K + R HG  W+  + P GPL +R++ +   G D  WV     + P+ W+AG+ YDTGVQ+
Sbjct:  154 VPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPSWSMANAPPGPLQMRLVVT--GGYDGKWVWADREVLPRRWRAGEVYDTGVQI 262          
BLAST of DY306027 vs. ExPASy Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.898e-14
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  414 VSCSYPYKNITIKIDEKSDYPHYLGFIIWYQQGKKDTTAVQLCETTNFACKLLDRSHGAVWTTTSPPSGPLSLRMLFSDEDGDDESWVVPVNNIPQDWKAGKPYDTGVQV 743
            V C Y  K + ++++E S  P+YL   + YQ G+ +  A+ + +  +     + RSHGAVW T   P+G L  R + +   G D   V     +P +W+AGK YD GVQ+
Sbjct:  141 VPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHGAVWVTDKVPNGALQFRFVVT--AGYDGKMVWSQRVLPANWEAGKSYDAGVQI 248          
BLAST of DY306027 vs. ExPASy Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.961e-13
Identity = 35/110 (31.82%), Postives = 58/110 (52.73%), Query Frame = 3
Query:  414 VSCSYPYKNITIKIDEKSDYPHYLGFIIWYQQGKKDTTAVQLCETTNFACKLLDRSHGAVWTTTSPPSGPLSLRMLFSDEDGDDESWVVPVNNIPQDWKAGKPYDTGVQV 743
            V C+Y  +N+ ++++E S  P+YL   + YQ G+ +   + +    +     + RSHGAVW T   P+G L  +  F+   G D   V     +P +W +G+ YD GVQ+
Sbjct:  140 VPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHGAVWATDKVPTGALQFK--FTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQI 247          
BLAST of DY306027 vs. ExPASy Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.898e-12
Identity = 36/111 (32.43%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  414 VSCSYPYKNITIKIDEKSDYPHYLGFIIWYQQGKKDTTAVQLCET-TNFACKLLDRSHGAVWTTTSPPSGPLSLRMLFSDEDGDDESWVVPVNNIPQDWKAGKPYDTGVQV 743
            V C Y  KN+ ++++E S  P+YL   + YQ G+ +  ++ + +  ++     + RSHGAVW T   P+G +  R + +   G D   +   + +P +W+AGK YD GVQ+
Sbjct:  140 VPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVT--GGYDGKMIWSQSVLPSNWEAGKIYDAGVQI 248          
BLAST of DY306027 vs. ExPASy Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.457e-12
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 3
Query:  414 VSCSYPY-KNITIKIDEKSDYPHYLGFIIWYQQGKKDTTAVQLCETTNFACKLLDRSHGAVWTTTSPPSGPLSLRMLFSDEDGDDESWVVPVNNI-PQDWKAGKPYDTGVQV 743
            V C Y   +N++I+++EKS  P  L     YQ G+ D  AV +    +   K + R +G  W+T   P+GPL  R++ +   G D  WV     + P+ W AG+ YD GVQ+
Sbjct:  149 VPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYGPAWSTAQAPAGPLQFRVVVT--GGYDGKWVWADGEVLPRRWTAGRVYDAGVQI 258          
BLAST of DY306027 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 8.461e-12
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 GACYQVRCLNSYYCSDRGATVVITDSGSGPNTDFILSRRAFGRMAQTKDAAAAILAHGVVNIEYRR 199
            GACYQVRC    +CS+ G  VV TDSG G  TDFILS +A+GRMA+       + + GVVN+EY+R
Sbjct:   77 GACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMAR-PGTENQLYSFGVVNVEYQR 141          

HSP 2 Score: 70.8626 bits (172), Expect = 1.879e-11
Identity = 39/108 (36.11%), Postives = 54/108 (50.00%), Query Frame = 3
Query:  414 VSCSYPYKNITIKIDEKSDYPHYLGFIIWYQQGKKDTTAVQLCETTNFACKLLDRSHGAVWTTTSPPSGPLSLRMLFSDEDGDDESWVVPVNNIPQDWKAGKPYDTGV 737
            + C Y   N+  KI EKS  PHYL  ++ Y  G  D  AV++ +      + + R  GAV    +PP G L+LR L     G   +W+   N IP DW AG  YD+ +
Sbjct:  142 IPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAVHDLQNPPRGTLTLRFLVYGSAG--INWIQSPNAIPADWTAGATYDSNI 247          
BLAST of DY306027 vs. ExPASy Swiss-Prot
Match: EXLA3_ORYSJ (Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.324e-11
Identity = 35/111 (31.53%), Postives = 59/111 (53.15%), Query Frame = 3
Query:  414 VSCSYPYKNITIKIDEKSDYPHYLGFIIWYQQGKKDTTAVQLCETTNFACKLLDRSHGAVWTTTSPPSGPLSLRMLFSDEDGDDESWVVPVNNI-PQDWKAGKPYDTGVQV 743
            + C Y  KN++I ++E+S  P+ L     YQ G+ D  AV + +  +   + + R +G VW+    P+GPL  R + +   G D  WV     + P +W+ G+ YDTG ++
Sbjct:  151 IPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDVAQVGSSDWRFMTRVYGPVWSIDRAPNGPLQFRAVVT--GGYDGKWVWADREVLPANWQPGQVYDTGARI 259          
The following BLAST results are available for this feature:
BLAST of DY306027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
EXLB1_ORYSJ5.428e-3561.26Expansin-like B1 OS=Oryza sativa subsp. japonica G... [more]
EXLA1_ORYSJ1.390e-1434.23Expansin-like A1 OS=Oryza sativa subsp. japonica G... [more]
EXLA2_ARATH6.898e-1434.55Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 ... [more]
EXLA3_ARATH9.961e-1331.82Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 ... [more]
EXLA1_ARATH2.898e-1232.43Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 ... [more]
EXLA2_ORYSJ6.457e-1234.82Expansin-like A2 OS=Oryza sativa subsp. japonica G... [more]
EXLB1_ARATH8.461e-1254.55Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXLA3_ORYSJ9.324e-1131.53Expansin-like A3 OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3BC03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306027 ID=DY306027; Name=DY306027; organism=Citrus sinensis; type=EST; length=1276bp
GGGCGCTTGCTACCAGGTTAGGTGTTTGAACAGCTACTATTGCTCAGACA
GAGGAGCAACGGTAGTGATTACGGATTCAGGCTCGGGTCCCAATACCGAC
TTTATTTTGAGCAGGCGAGCCTTCGGCCGAATGGCTCAAACCAAAGATGC
AGCAGCAGCTATATTAGCACATGGTGTTGTGAATATTGAATATAGACGGT
AAGCAAGGCTAGTCCATGTGAAAAATTGTGCTCAGGACCGGTTGTCTAAA
TATAAGCTACTATAATTTTACAGAGTAGTACGATTTTGATTACAGTTCAA
ATCTGAATTTTATAACATCCGGATGTCTGTACTTATATTATAGATAAGCT
GTATAACTAATTAATGGGAAACTTATTAAATTTCTATCATTCTATTTGCA
TGCGTGCAACAGTGTTTCGTGCAGCTACCCATACAAAAATATAACAATAA
AGATCGATGAGAAAAGCGACTATCCTCATTATTTGGGATTTATCATATGG
TATCAACAAGGCAAAAAGGATACCACTGCCGTGCAGCTCTGTGAGACTAC
GAACTTTGCGTGCAAGCTTCTGGATAGGAGTCATGGAGCGGTATGGACAA
CGACGTCGCCGCCGAGCGGTCCGTTGTCTTTGAGGATGTTGTTTAGCGAT
GAAGATGGAGACGATGAGTCGTGGGTTGTTCCTGTTAATAACATACCACA
AGACTGGAAAGCCGGAAAACCATATGACACCGGAGTTCAAGTCAACTGAT
CTCATTTAATATATATATATATATTGGGTTTTCCATCAGAAATTACGGAC
CAGGTTAAATTCAAGATAAACAAAAAAAAAACAAAAATTTTCCATACCCC
CAGAACAAAATATATTTATTTTAAAGTTTAGTGTATTTTTAAAATGGGTC
AAGGTTCCTGATTTGAAACATAAATGTGAAAGGCAAATATTTGCGAAAAT
TAATTTTTTGTTTTTTTCCCAAATAATTTTCCTTTTTTAACGGGTAAAAA
ATAAAAAAAAAAAACCTCGGAGGGGGGGGCCCCGGTACCCACATTTCCCC
CCTGTAGGGGGGGCGGTATATATGAGTTTTCAGGGGCCGGCTGGTTTTTC
ACTCCTCTGCAGTATGGGGGAGAAACACCTGGGGGCTTATTCACCACCGC
TATGATGCCCTCATCTAGCGACTCATGCCCCCCCCCACGTTCCTGCCCCC
GCCCGTGCCGGCGCGATAATGATGGGGAATAATAGGAAAACCGCCCCCCC
CCATATGAGCAATTCCCGCCTCCCCC
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