DY306021

Overview
NameDY306021
Unique NameDY306021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length977
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY306021 vs. ExPASy Swiss-Prot
Match: TIF9_ARATH (Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.022e-40
Identity = 101/185 (54.59%), Postives = 131/185 (70.81%), Query Frame = 1 
Query:   88 MSRATVELDFFGLENKE-NSSNKPQFKKF-PRQRSFRDIQGAISKINPEIIKSVIAS-----GSAKSSISLPSTPKEEPITFPDVPLYRHIPKSGSENVSETAPLTIFYNGTVAVFDVHREKAEHILKLAVEGNSKSFESN---DANV--ASDQQQQLLETLNTGDLPIARRKSLQRFLEKRKER 606
            MS+AT+ELDF GLE K+ N++ KP+F+KF  R+RSFRDIQGAISKI+PEIIKS++AS      S+  S S+PSTP+E+    P  P++  + +S +E VS T P+TIFYNG+V+VF V R KA  I+K+A E  SK  ES+   D +V   +  + +L      GDLPIARRKSLQRFLEKRKER
Sbjct:    1 MSKATIELDFLGLEKKQTNNAPKPKFQKFLDRRRSFRDIQGAISKIDPEIIKSLLASTGNNSDSSAKSRSVPSTPREDQPQIPISPVHASLARSSTELVSGTVPMTIFYNGSVSVFQVSRNKAGEIMKVANEAASKKDESSMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKER 185
The following BLAST results are available for this feature:
BLAST of DY306021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF9_ARATH1.022e-4054.59Protein TIFY 9 OS=Arabidopsis thaliana GN=TIFY9 PE... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3BB05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306021 ID=DY306021; Name=DY306021; organism=Citrus sinensis; type=EST; length=977bp
GAAACATCTAAAGCCAAAGTTCGTTTTTCTTTTCTTCAACTCGTCTCTCA
CGATTCATTCACTACTCAACATTTTTCTTCATTAGCCATGTCTCGAGCTA
CCGTTGAACTCGATTTCTTCGGCTTGGAGAATAAAGAAAACTCCTCTAAC
AAGCCTCAGTTCAAGAAATTTCCTCGCCAAAGAAGCTTTCGAGACATTCA
AGGCGCCATTTCGAAGATTAATCCTGAGATTATTAAATCTGTGATTGCTT
CCGGTTCTGCGAAATCATCAATCTCTTTGCCGTCTACTCCAAAAGAAGAG
CCGATTACGTTTCCCGACGTGCCTCTGTACAGGCACATTCCAAAGTCTGG
TTCAGAGAACGTTTCGGAAACAGCTCCTCTGACTATATTTTATAACGGAA
CCGTCGCTGTTTTTGATGTTCATCGAGAGAAGGCTGAGCACATTCTGAAA
CTTGCTGTTGAAGGAAACTCAAAAAGTTTCGAATCAAATGATGCTAATGT
TGCAAGCGATCAGCAACAACAGCTGCTTGAGACTCTTAATACTGGAGATC
TGCCAATTGCGAGGAGAAAGTCACTCCAGAGATTTCTGGAGAAACGCAAA
GAGAGGAATGATATGGAGTCTGATATCAAGCAACTAAGCGATTGACTTTG
GTGTCTCCTTATTCATGCCACACTTAAAAAAACGCGTTTTGGTAATTGGG
ACATGAAGATCAATGGAGATTGATGTTATTGCCGGCCTAAAAAGAGGAGA
AAGTTAATGGGCACAAGAGTAGTTTTGGAAAAATTCTGTTTCCATCTTTT
CGGAGGGTGAGCTTTTGGTCGTACTTAATAGCCTGCCTCGGTTGAATCAG
TGGAATGAATAATAAAATACAATAAAACGGGCCTCGTTCCGTGGCGGTTC
CCTCTCCTTTGGGCCCCCATTCTAAATTTTTTTTGGGAAAATTGGATTAT
TTAACCTATTAAATGGTCGTGGAAAAT
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