DY306011

Overview
NameDY306011
Unique NameDY306011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5365 contig Csv1_Contig5365:19..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY306011 vs. ExPASy Swiss-Prot
Match: ARSA_METJA (Putative arsenical pump-driving ATPase OS=Methanocaldococcus jannaschii GN=MJ1142 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.069e-11
Identity = 36/121 (29.75%), Postives = 66/121 (54.55%), Query Frame = 3 
Query:   87 DKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVXXXXXXXXXXXXXNVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDIIW 449
            ++LE+++ER+V+ R +  D + T F +V IP  M++              +P+  +IVNQ+IP     C FC  +R+ Q++ LEMIK   +    ++   PL+  E +G+  L+ +  I++
Sbjct:  216 EELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDV-QCDFCRARRELQLKRLEMIK--EKFGDKVIAYVPLLRTEAKGIETLKQIAKILY 333
[Close]
BLAST of DY306011 vs. ExPASy Swiss-Prot
Match: ARSA_METTH (Putative arsenical pump-driving ATPase OS=Methanobacterium thermoautotrophicum GN=MTH_1511 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 40/151 (26.49%), Postives = 75/151 (49.67%), Query Frame = 3 
Query:    6 QLREKIASATSAIKSVF---GQEQNRQGASDKLERLRERMVKVRELFRDTDSTEFVIVTIPTVMAVXXXXXXXXXXXXXNVPVKRLIVNQIIPPSASDCKFCAMKRKDQMRALEMIKSDSELSSLMLIEAPLVDVEIRGVPALRFMGDIIW 449
            ++R +I S   A K++    G E+    A   +E  ++++   RE+  D + T F +V IP  M++             ++    +IVNQ++ P  SDC+FC  +RK Q   L+ I+   + S  ++ E PL+  E +G+  L  + + ++
Sbjct:  171 KIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVL-PEESDCEFCNARRKLQQERLKQIR--EKFSDKVVAEVPLLKKEAKGIETLEKIAEQLY 318
The following BLAST results are available for this feature:
BLAST of DY306011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ARSA_METJA1.069e-1129.75Putative arsenical pump-driving ATPase OS=Methanoc... [more]
ARSA_METTH9.047e-1126.49Putative arsenical pump-driving ATPase OS=Methanob... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3BA04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306011 ID=DY306011; Name=DY306011; organism=Citrus sinensis; type=EST; length=862bp
GGTGACAGCTTAGGGAAAAAATAGCTTCAGCAACCTCAGCAATAAAATCT
GTGTTTGGGCAAGAACAAAATCGCCAGGGTGCTTCTGACAAATTAGAGCG
ACTGAGGGAAAGGATGGTAAAAGTGCGTGAGCTCTTTCGTGATACGGATT
CAACAGAGTTTGTCATAGTAACAATCCCAACGGTGATGGCGGTCAGTGAG
TCATCTAGGTTGTCTGAGTCACTGAAGAAGGAAAATGTTCCTGTCAAGAG
GCTTATTGTTAATCAGATTATTCCCCCATCTGCTTCAGACTGCAAGTTTT
GCGCAATGAAAAGAAAGGATCAAATGCGTGCTCTTGAGATGATTAAGAGT
GATTCAGAACTCTCCAGCTTGATGCTGATTGAGGCACCCCTAGTTGATGT
GGAGATTAGAGGAGTCCCCGCTCTTAGATTTATGGGGGACATTATATGGA
AGTGATAATCTCTTCAACGATTTCAGAGGTGATTAACCCTTTGCTTCTTC
CTTTTTTCTCTGCCTTTACTTCACCTCTTAAAACCAAGTTATTTTAAGTA
TCGGCTTCAACTTCTTCAAGCAATACAGTATGACAGATCAAAAGAAGATT
TTGCCTTCAATACGAGCAATCTCAGAAGCCAGGAAACTGAGTGACACAGC
CAGAAGTATGAATTCTATATACGGAAGCCATTCTAACCCATGCAGTTATA
ATGCAGAAAGTATGTATGCAACAGTTCCCCCCACACATGAACAGGGGTCT
GAACTTTAGACTGGTGAGATTTTACAATTTTGCAGTGCTTTTTAAATTGA
AATGACACTGGCACAAAAACAAAAATTGGCCCTAGCTCAAATTTAAAACA
CCCTATTTTCAT
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