DY306007

Overview
NameDY306007
Unique NameDY306007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:780..1498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY306007 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.830e-68
Identity = 124/146 (84.93%), Postives = 130/146 (89.04%), Query Frame = -2 
Query:  303 GIYGGDQLWVARYILERITEIAGVVICFDPKPIQGDWNGGGAHANYSTK*MRKDGGLEVIKKAIEKLGVRHSEHIAAYGEGNERRFNGKHETADINIFKWGVANRGASICVGRDTEKEGKGYFEDRRLVSNMDPYVVTSMIAETTI 740
            GI  GD+LWVARYILERITEIAGVV+ FDPKPIQGDWNG GAH NYSTK MR DGG E+IKKAIEKLG+RH EHIAAYGEGNERR  G+HETADIN F WGVANRGASI VGRDTEKEGKGYFEDRR  SNMDPYVVTSMIAE+TI
Sbjct:  207 GISAGDELWVARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTI 352
[Close]
BLAST of DY306007 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 8.233e-68
Identity = 124/146 (84.93%), Postives = 129/146 (88.36%), Query Frame = -2 
Query:  303 GIYGGDQLWVARYILERITEIAGVVICFDPKPIQGDWNGGGAHANYSTK*MRKDGGLEVIKKAIEKLGVRHSEHIAAYGEGNERRFNGKHETADINIFKWGVANRGASICVGRDTEKEGKGYFEDRRLVSNMDPYVVTSMIAETTI 740
            GI  GD+LWV+RYILERITEIAGVV+ FDPKPIQGDWNG GAH NYSTK MR DGG EVIKKAIEKLG+RH EHIAAYGEGNERR  G+HETADIN F WGVANRGASI VGRDTEK GKGYFEDRR  SNMDPYVVTSMIAETTI
Sbjct:  207 GISAGDELWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTI 352
[Close]
BLAST of DY306007 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.396e-67
Identity = 121/146 (82.88%), Postives = 131/146 (89.73%), Query Frame = -2 
Query:  303 GIYGGDQLWVARYILERITEIAGVVICFDPKPIQGDWNGGGAHANYSTK*MRKDGGLEVIKKAIEKLGVRHSEHIAAYGEGNERRFNGKHETADINIFKWGVANRGASICVGRDTEKEGKGYFEDRRLVSNMDPYVVTSMIAETTI 740
            GI  GD++W ARYILERITEIAGVV+ FDPKPI GDWNG GAHAN+STK MR++GG EVIKKAIEKLG+RH EHIAAYGEGNERR  GKHETADIN+F WGVANRG+SI VGRDTEK+GKGYFEDRR  SNMDPYVVTSMIAETTI
Sbjct:  207 GISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHANFSTKSMRENGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTI 352
[Close]
BLAST of DY306007 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 2.396e-67
Identity = 122/146 (83.56%), Postives = 131/146 (89.73%), Query Frame = -2 
Query:  303 GIYGGDQLWVARYILERITEIAGVVICFDPKPIQGDWNGGGAHANYSTK*MRKDGGLEVIKKAIEKLGVRHSEHIAAYGEGNERRFNGKHETADINIFKWGVANRGASICVGRDTEKEGKGYFEDRRLVSNMDPYVVTSMIAETTI 740
            GI  GD++WVARYILERITEIAGVV+ FDPKPI+GDWNG GAH NYSTK MR+DGG EVIKKAI+KLG+RH EHIAAYGEGNERR  G+HETADIN F WGVANRGASI VGRDTEKEGKGYFEDRR  SNMDPYVVTSMIA+TTI
Sbjct:  207 GISAGDEVWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTI 352
[Close]
BLAST of DY306007 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.086e-67
Identity = 121/146 (82.88%), Postives = 129/146 (88.36%), Query Frame = -2 
Query:  303 GIYGGDQLWVARYILERITEIAGVVICFDPKPIQGDWNGGGAHANYSTK*MRKDGGLEVIKKAIEKLGVRHSEHIAAYGEGNERRFNGKHETADINIFKWGVANRGASICVGRDTEKEGKGYFEDRRLVSNMDPYVVTSMIAETTI 740
            GI  GD++W ARYILERITEIAGVV+  DPKPIQGDWNG GAH NYSTK MR +GG E+IKKAIEKLG+RH EHIAAYGEGNERR  G+HETADIN FKWGVANRGASI VGRDTEKEGKGYFEDRR  SNMDPYVVTSMIAETT+
Sbjct:  207 GISAGDEVWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTNYSTKSMRNNGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTL 352
[Close]
BLAST of DY306007 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.337e-67
Identity = 120/146 (82.19%), Postives = 131/146 (89.73%), Query Frame = -2 
Query:  303 GIYGGDQLWVARYILERITEIAGVVICFDPKPIQGDWNGGGAHANYSTK*MRKDGGLEVIKKAIEKLGVRHSEHIAAYGEGNERRFNGKHETADINIFKWGVANRGASICVGRDTEKEGKGYFEDRRLVSNMDPYVVTSMIAETTI 740
            GI  GD++W ARYILERITEI+GVV+ FDPKPI GDWNG GAHAN+STK MR++GG EVIKKAIEKLG+RH EHIAAYGEGNERR  GKHETADIN+F WGVANRG+SI VGRDTEK+GKGYFEDRR  SNMDPYVVTSMIAETTI
Sbjct:  207 GISAGDEIWAARYILERITEISGVVVSFDPKPIPGDWNGAGAHANFSTKSMRENGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTI 352
[Close]
BLAST of DY306007 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.189e-66
Identity = 119/146 (81.51%), Postives = 128/146 (87.67%), Query Frame = -2 
Query:  303 GIYGGDQLWVARYILERITEIAGVVICFDPKPIQGDWNGGGAHANYSTK*MRKDGGLEVIKKAIEKLGVRHSEHIAAYGEGNERRFNGKHETADINIFKWGVANRGASICVGRDTEKEGKGYFEDRRLVSNMDPYVVTSMIAETTI 740
            GI  GD++W ARYILERITEIAGVV+ FDPKPI GDWNG GAH NYSTK MR+DGG E+IKKAIEKLG+RH EHIAAYGEGNERR  GKHET DIN F WGVANRGAS+ VGRDTEK+GKGYFEDRR  SNMDPYVVTSMIAETT+
Sbjct:  207 GISAGDEIWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTL 352
[Close]
BLAST of DY306007 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.553e-66
Identity = 122/146 (83.56%), Postives = 128/146 (87.67%), Query Frame = -2 
Query:  303 GIYGGDQLWVARYILERITEIAGVVICFDPKPIQGDWNGGGAHANYSTK*MRKDGGLEVIKKAIEKLGVRHSEHIAAYGEGNERRFNGKHETADINIFKWGVANRGASICVGRDTEKEGKGYFEDRRLVSNMDPYVVTSMIAETTI 740
            GI   DQ+WVARYILERITEI GVV+ FDPKPI GDWNG GAH NYSTK MR++GG EVIKKAIEKLG+RH EHIAAYGEGNERR  G+HETADIN F WGVANRGASI VGRDTEKEGKGYFEDRR  SNMDPYVVTSMIAETTI
Sbjct:  207 GIAAADQIWVARYILERITEIYGVVVSFDPKPIPGDWNGAGAHTNYSTKTMREEGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 352
[Close]
BLAST of DY306007 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.649e-66
Identity = 122/146 (83.56%), Postives = 127/146 (86.99%), Query Frame = -2 
Query:  303 GIYGGDQLWVARYILERITEIAGVVICFDPKPIQGDWNGGGAHANYSTK*MRKDGGLEVIKKAIEKLGVRHSEHIAAYGEGNERRFNGKHETADINIFKWGVANRGASICVGRDTEKEGKGYFEDRRLVSNMDPYVVTSMIAETTI 740
            GI  GD+LWVARYILERITEIAGVV+ FDPKPI+GDWNG GAH NYSTK MR DGG EVIK AIEKLG RH EHIAAYGEGNERR  G+HETADIN F WGVANRGASI VGRDTEK GKGYFEDRR  SNMDPYVVTSMIA+TTI
Sbjct:  207 GISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTI 352
[Close]
BLAST of DY306007 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 2.649e-66
Identity = 120/146 (82.19%), Postives = 129/146 (88.36%), Query Frame = -2 
Query:  303 GIYGGDQLWVARYILERITEIAGVVICFDPKPIQGDWNGGGAHANYSTK*MRKDGGLEVIKKAIEKLGVRHSEHIAAYGEGNERRFNGKHETADINIFKWGVANRGASICVGRDTEKEGKGYFEDRRLVSNMDPYVVTSMIAETTI 740
            GI  GD++WVARYILERITE+AGVV+ FDPKPI+GDWNG GAH NYSTK MR+DGG E+IKKAIEKLG R  EHI+AYGEGNERR  GKHETADIN F WGVANRGAS+ VGRDTEKEGKGYFEDRR  SNMDPYVVTSMIAETTI
Sbjct:  206 GISAGDEIWVARYILERITEVAGVVLTFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGKRLPEHISAYGEGNERRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 351
The following BLAST results are available for this feature:
BLAST of DY306007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_VITVI2.830e-6884.93Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA1_VITVI8.233e-6884.93Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA3_PEA2.396e-6782.88Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA1_LOTJA2.396e-6783.56Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA1_ALNGL4.086e-6782.88Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA4_PEA5.337e-6782.19Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA3_MEDSA1.189e-6681.51Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA_LACSA1.553e-6683.56Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA_VIGAC2.649e-6683.56Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_PEA2.649e-6682.19Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3AH09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306007 ID=DY306007; Name=DY306007; organism=Citrus sinensis; type=EST; length=741bp
GAAATGAAACTGCAATATAATAACACAAAACAAAGGCTTTGAACAAAAGG
AATTGACCCTTCCATAATGTTATTAAATTAAATGTTTACATTATTCAACC
CAATAGGACAGCAGGAAACAACTAACCCACTGTTGCAAATACAGGGGCAG
AAATTGAAACAACCACAAAAGCTGAACTACTACTAATAAAACATCCTTAA
CAAAACACAATTCTGTCTTGAACTCGTGAATCCTGAGTAAAGCCATCTGA
TCAAACAAAATATTTCAAAGGTTGCTAGAGGAGCATTCATGGCTTCCACA
TTAATAGTGGTTTCTGCAATCATGGAGGTGACAACATATGGATCCATGTT
AGAAACAAGTCTCCTGTCCTCAAAGTAACCCTTTCCTTCTTTCTCTGTGT
CTCGTCCAACACAGATTGATGCCCCACGGTTAGCAACACCCCATTTGAAA
ATGTTGATGTCAGCTGTTTCATGTTTCCCATTGAAACGGCGTTCATTGCC
TTCTCCATATGCGGCAATGTGCTCACTGTGCCTCACTCCAAGTTTCTCAA
TTGCTTTCTTAATAACCTCCAAGCCTCCATCCTTCCTCATCTACTTGGTG
CTGTAATTTGCGTGAGCACCACCTCCATTCCAGTCACCCTGAATTGGCTT
GGGATCGAAACAAATCACAACTCCAGCAATCTCTGTAATCCTCTCTAAAA
TATAGCGGGCAACCCACAACTGATCTCCACCATAAATTCCA
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