DY306002

Overview
NameDY306002
Unique NameDY306002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1289
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY306002_ssr56 microsatellite DY306002_ssr56:56..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.316e-78
Identity = 142/211 (67.30%), Postives = 167/211 (79.15%), Query Frame = 3
Query:  273 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRRVWQSWVRG 905
            R+VWA NLESEF+LI  +++ YPFISMDTEFPG++Y+ D+D       R+  P+  Y +LKSNVDAL+LIQVGLTLSD+ GNLPDLG   N ++IWEFNFRDFDV  D HAPDSIELLR  GIDFERNR EGV+S RFAELMMSSGL+CNESVSWVTFHSAYDFGYLVKILTRR LP  L EFL + R FFG+ +Y+VK + R  +  + G
Sbjct:   15 RDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYG 220          

HSP 2 Score: 26.9498 bits (58), Expect = 1.316e-78
Identity = 15/35 (42.86%), Postives = 20/35 (57.14%), Query Frame = 1
Query:  910 DPVARKLDGNPGGREIG--HQPGSDTLSNWEGLSK 1008
            D VAR L+ N   R +G  HQ GSD+L  W+   +
Sbjct:  223 DRVARSLEVN---RAVGKCHQAGSDSLLTWQAFQR 254          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.437e-77
Identity = 143/203 (70.44%), Postives = 162/203 (79.80%), Query Frame = 3
Query:  273 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+        R   P D Y +LK+NVDAL+LIQVGLTLSD +GNLPDLG   +  FIWEFNFRDFDVA DAHAPDSIELLR QGIDFERN  +GV+S RFAELMMSSGLVCNE VSWVTFHSAYDFGYL+KILTRR LP  L EF  V RV FG  +Y+VK + +
Sbjct:   20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMK 214          

HSP 2 Score: 25.7942 bits (55), Expect = 1.437e-77
Identity = 15/35 (42.86%), Postives = 19/35 (54.29%), Query Frame = 1
Query:  910 DPVARKLDGNPGGREIG--HQPGSDTLSNWEGLSK 1008
            D VAR L+ N   R +G  HQ GSD+L  W    +
Sbjct:  225 DRVARTLEVN---RAVGKCHQAGSDSLLTWHAFQR 256          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.382e-54
Identity = 110/208 (52.88%), Postives = 145/208 (69.71%), Query Frame = 3
Query:  273 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRRVWQS 893
            REVW  NLESE  LI +V+D +PF++MDTEFPG+V RP     T   +       HY+ LK+NV+ L +IQ+GLT SD  GNLP  G+  +NK+ IW+FNFR+FD+ +D +A DSIELLR  GIDF +N E G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP     F  +  V+F   +Y++K L +   S
Sbjct:   13 REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYF-PRVYDIKHLMKFCNS 210          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 6.487e-52
Identity = 119/254 (46.85%), Postives = 159/254 (62.60%), Query Frame = 3
Query:  273 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRRVWQSWVRGAGPSGSEVGWEPGRSGNWPPAGVGYPFELGRPFQKLRGGVFP 1031
            REVW  NL  EF LI +++D++ +I+MDTEFPG+V +P    +T  Y        +Y+ LK NVD L LIQVGLT SD +GNLP  G+   +KF IW+FNFR+F++  D +A +SIELLR  GIDF++N E+G+D VRF ELMMSSG+V N+++SWVTFH  YDFGYLVK+LT + LP    +F  +  V+F   +Y++K L         G       +G E  R G    AG      LG  F+KL+   FP
Sbjct:   13 REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVE--RVGICHQAGSDSLLTLG-SFRKLKERYFP 252          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.598e-50
Identity = 102/208 (49.04%), Postives = 140/208 (67.31%), Query Frame = 3
Query:  273 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRRVWQS 893
            REVW  NL+ E +LI  V+D +P+++MDTEFPG+V RP     S   Y        HY+ LK+NV+ L +IQ+GLT S+  GNLP  G+  +   IW+FNFR+FD+ +D  A DSIELL+  GID  +N  +G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP    +F  +  V+F   +Y++K L +   S
Sbjct:   13 REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY--------HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYF-PTVYDIKHLMKFCNS 209          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.013e-49
Identity = 102/202 (50.50%), Postives = 136/202 (67.33%), Query Frame = 3
Query:  273 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTL 875
            REVW  NLE E  LI Q ID +P+++MDTEFPG+V +    +P+  PY    + +  Y  LK+NV+ L LIQ+GLTLSD  GNLP  G+  N + IW+FNFR+F+V +D  A DSIELLR   ID E+N E GVD+ RFAEL+M SG+V N+ + WVTFH  YDFGYL+K+L+ + LP  + +F      FF   +Y++K L
Sbjct:   17 REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN--YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYL 213          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.919e-44
Identity = 92/204 (45.10%), Postives = 134/204 (65.69%), Query Frame = 3
Query:  273 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            R+VW++NL+ E  LI  +I+RYP +SMDTEFPG+V RP  V  S+  Y        HY+ L++NVD+L +IQ+GL LSD  GN P           W+FNF  F++  D +AP+SIELL   GIDF++++E G++   FAEL++ SGLV  E V+W+TFHS YDF YL+K +T+  LP+  +EF  +  ++F  N Y++K + +
Sbjct:   23 RDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQTLRANVDSLKIIQIGLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKN-YDIKYIMK 210          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.499e-40
Identity = 92/203 (45.32%), Postives = 130/203 (64.04%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  + R+FF   IY+VK L +
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMK 200          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 1.499e-40
Identity = 92/203 (45.32%), Postives = 130/203 (64.04%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  + R+FF   IY+VK L +
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMK 200          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.499e-40
Identity = 92/203 (45.32%), Postives = 130/203 (64.04%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  + R+FF   IY+VK L +
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMK 200          
The following BLAST results are available for this feature:
BLAST of DY306002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1K_ARATH1.316e-7867.30Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH1.437e-7770.44Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1G_ARATH2.382e-5452.88Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1J_ARATH6.487e-5246.85Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1F_ARATH1.598e-5049.04Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1B_ARATH3.013e-4950.50Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1_SCHPO2.919e-4445.10Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_MOUSE1.499e-4045.32CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_HUMAN1.499e-4045.32CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK1.499e-4045.32CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3AG10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306002 ID=DY306002; Name=DY306002; organism=Citrus sinensis; type=EST; length=1289bp
GCAAGCAACATCTCCGCCCACCACCAGGAAACACAATAAGCTATCGGTAT
ATCTCTATATATATATATTCCTCTATTAGAACTTTTCACAAACACCTCTC
AACTCTCAAGCAACAGCAGTTACCAGCAACAGTAAAGACTTTCAAATCTC
ACTTGCGAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCATC
ATGGGAGCTGGAGATTTTTCTACGGATTTAGATTCAAGCTCAAATTCCAG
CTCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAAT
CCGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTCC
ATGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCTC
CACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTTT
TGAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCTC
TCTGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATAA
ATTCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCCC
ACGCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTTTGAG
CGCAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGAT
GTCGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTCCACA
GCGCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAGCTTG
CCCAGTGGGCTAGACGAGTTTTTGACGGTCTTCAGGGTGTTTTTCGGGAA
CAACATTTATGAGGTCAAAACATTAAGGCGGGTCTGGCAAAGCTGGGTAC
GGGGGGCGGGACCCAGTGGCTCGGAAGTTGGATGGGAACCCGGGCGGTCG
GGAAATTGGCCACCAGCCGGGGTCGGATACCCTTTCGAACTGGGAAGGCC
TTTCCAAAAATTAAGGGGGGGGGTTTTCCCTCCACACAAGGAAAGCGAAA
AAGCCAGGGCGGCGTAATAAAAAGGGGAAAAAAAAAGTGGTTTAAATTTT
AATTTTGGGCCCAAATTTTTTTTTTTTTTTGTATTTTTTTTAAAAAAAAA
AAAAAAAAAAAACCCCTGGGGGGGGGGGGGGGCGGCGGGAACCCGCGATA
TTTTCTCCCCCCTAAAGGGGGAGGGGGGTTGTAATAATATATAAAAATGA
TGATAGGGGGGGCAGGCGGGGTCGTTCCTGTGTTTATTA
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