DY305997

Overview
NameDY305997
Unique NameDY305997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1269
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305997_ssr1012 microsatellite DY305997_ssr1012:1012..1021. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7772 contig Csv1_Contig7772:585..1853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305997 vs. ExPASy Swiss-Prot
Match: YSL5_ARATH (Probable metal-nicotianamine transporter YSL5 OS=Arabidopsis thaliana GN=YSL5 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 3.811e-81
Identity = 142/210 (67.62%), Postives = 167/210 (79.52%), Query Frame = 2
Query:    2 AGSSHXXXXXXXXXXXXMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFVWKKIDKAKAHAFGPAVASGLICGDXXXXXXXXXXALK*VKPQMGM 631
            AGS H            MMNIVSTASDLTQDFKTGYLTL+SP+SMFVSQVIGTA+GC+VSPCVFWLFYKAFDDLG+P +EY APFA VYR+MAKLGVEG ++LP+ CL+LCY  FG AI++N+++DS+   W RFIPLPMAMAIPF+LGPYFAIDMCVGSL+LF+W+++D AKA AFG AVASGLICGD          A+  V P + M
Sbjct:  486 AGSEHGGMLAGLAACGVMMNIVSTASDLTQDFKTGYLTLSSPKSMFVSQVIGTAMGCVVSPCVFWLFYKAFDDLGLPNTEYPAPFATVYRSMAKLGVEGVASLPRECLVLCYAFFGVAILVNIVKDSLHSNWGRFIPLPMAMAIPFFLGPYFAIDMCVGSLILFIWERVDAAKAEAFGTAVASGLICGDGIWSLPSSVLAIAGVNPPVCM 695          
BLAST of DY305997 vs. ExPASy Swiss-Prot
Match: YSL8_ARATH (Probable metal-nicotianamine transporter YSL8 OS=Arabidopsis thaliana GN=YSL8 PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 8.490e-81
Identity = 145/210 (69.05%), Postives = 166/210 (79.05%), Query Frame = 2
Query:    2 AGSSHXXXXXXXXXXXXMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFVWKKIDKAKAHAFGPAVASGLICGDXXXXXXXXXXALK*VKPQMGM 631
            AGS H            MMNIVSTASDLTQDFKTGYLTL+SPR+MFVSQVIGTA+GC+VSPCVFWLFYKAFDDLG+P SEY APFA VYR+MAKLGVEG S+LP++CL+LCYV FG AI+INLI+D +   W RF+PLPMAMAIPF+LGPYFAIDMCVGS +LFVW+++D  KA AF  AVASGLICGD          A+  VKP + M
Sbjct:  496 AGSDHGGLLAGLAACGVMMNIVSTASDLTQDFKTGYLTLSSPRAMFVSQVIGTAMGCLVSPCVFWLFYKAFDDLGLPNSEYPAPFATVYRSMAKLGVEGVSSLPRDCLMLCYVFFGVAILINLIKDCLGNRWGRFVPLPMAMAIPFFLGPYFAIDMCVGSFILFVWERLDAPKAEAFATAVASGLICGDGIWTLPSSVLAIAGVKPPICM 705          
BLAST of DY305997 vs. ExPASy Swiss-Prot
Match: YSL7_ARATH (Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 1.074e-75
Identity = 135/210 (64.29%), Postives = 164/210 (78.10%), Query Frame = 2
Query:    2 AGSSHXXXXXXXXXXXXMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFVWKKIDKAKAHAFGPAVASGLICGDXXXXXXXXXXALK*VKPQMGM 631
            AG+S+            MMNIVSTASDL QDFKTGY+TLASPRSMF+SQ IGTA+GC++SPCVFWLFYKAF D G PG+ Y AP+A+VYRNM+ LGVEGFSALPK+CL+LCY+ F AA+++N IRD++  +WARFIPLPMAMAIPFYLG YF IDMC+GSL+LF+W+K++K KA A+  AVASGLICG+          AL  VK  + M
Sbjct:  461 AGASNGGVLAGLAACGVMMNIVSTASDLMQDFKTGYMTLASPRSMFLSQAIGTAMGCVISPCVFWLFYKAFPDFGQPGTAYPAPYALVYRNMSILGVEGFSALPKHCLMLCYIFFAAAVIVNGIRDALGPKWARFIPLPMAMAIPFYLGGYFTIDMCLGSLILFIWRKLNKPKADAYSSAVASGLICGEGIWTLPSSILALAGVKAPICM 670          
BLAST of DY305997 vs. ExPASy Swiss-Prot
Match: YSL14_ORYSJ (Probable metal-nicotianamine transporter YSL14 OS=Oryza sativa subsp. japonica GN=YSL14 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 3.125e-75
Identity = 138/210 (65.71%), Postives = 164/210 (78.10%), Query Frame = 2
Query:    2 AGSSHXXXXXXXXXXXXMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFVWKKIDKAKAHAFGPAVASGLICGDXXXXXXXXXXALK*VKPQMGM 631
            AG SH            MM+IVSTASDL QDFKTGYLTLASPRSMF+SQVIGT +GC+++PCVFWLFYKAF ++G  G+EY AP+A+VYRNMA LGV+GF++LP+NCL LCY+ F AAI INLIRD    + +RFIPLPMAMAIPFY+G YFAIDM +GS++LFVW+K++KAKA AFGPAVASGLICGD          AL  VKP + M
Sbjct:  501 AGLSHGGVLVGLAACGVMMSIVSTASDLMQDFKTGYLTLASPRSMFISQVIGTGMGCVIAPCVFWLFYKAFSNIGTSGTEYPAPYAIVYRNMAILGVDGFNSLPENCLTLCYIFFAAAIAINLIRDLAPHKVSRFIPLPMAMAIPFYIGSYFAIDMFLGSVILFVWEKLNKAKADAFGPAVASGLICGDGIWTLPQSILALAKVKPPICM 710          
BLAST of DY305997 vs. ExPASy Swiss-Prot
Match: YSL12_ORYSJ (Probable metal-nicotianamine transporter YSL12 OS=Oryza sativa subsp. japonica GN=YSL12 PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 5.330e-75
Identity = 139/210 (66.19%), Postives = 164/210 (78.10%), Query Frame = 2
Query:    2 AGSSHXXXXXXXXXXXXMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFVWKKIDKAKAHAFGPAVASGLICGDXXXXXXXXXXALK*VKPQMGM 631
            AG+S+            MM+IVSTASDL QDFKTGYLTLASPRSMFVSQVIGTA+GC+++PCVFWLFYKAF D+GV G+EY AP+A+VYRNMA LGV+GFS+LPK+CL LCY+ F AAI INL RD    + ARFIPLPMAMAIPFY+G YFAIDM +G+++LFVW+ ++KAKA AF PAVASGLICGD          AL  VKP + M
Sbjct:  491 AGASNGGVLVGLAACGVMMSIVSTASDLMQDFKTGYLTLASPRSMFVSQVIGTAMGCVIAPCVFWLFYKAFADIGVSGTEYPAPYAIVYRNMAILGVDGFSSLPKHCLTLCYIFFAAAIAINLARDLAPSKVARFIPLPMAMAIPFYIGSYFAIDMFIGTVILFVWEMVNKAKAEAFAPAVASGLICGDGIWTLPQSILALAKVKPPICM 700          
BLAST of DY305997 vs. ExPASy Swiss-Prot
Match: YSL13_ORYSJ (Probable metal-nicotianamine transporter YSL13 OS=Oryza sativa subsp. japonica GN=YSL13 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 1.715e-73
Identity = 134/209 (64.11%), Postives = 165/209 (78.95%), Query Frame = 2
Query:    5 GSSHXXXXXXXXXXXXMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFVWKKIDKAKAHAFGPAVASGLICGDXXXXXXXXXXALK*VKPQMGM 631
            G+SH            MMNIVSTA+DL QDFKTGYLTLASPRSMFVSQVIGTA+GC+++PCVFWLFYKAFD++G+ GS+Y AP A V+R++A LGV+GFS+LPKNCL LCY  F AAIV+NLIRD + K  +RFIP+PMAMAIPFY+G YFAIDM +G+++LFVW+++D+AKA  +GPAVASG+ICGD          AL  VKP + M
Sbjct:  497 GASHGGVLAGLAACGVMMNIVSTAADLMQDFKTGYLTLASPRSMFVSQVIGTAMGCVIAPCVFWLFYKAFDNIGISGSDYPAPNAAVFRSIAILGVDGFSSLPKNCLNLCYAFFAAAIVVNLIRDLVPKV-SRFIPIPMAMAIPFYIGSYFAIDMFIGTVILFVWQRVDRAKADTYGPAVASGMICGDGIWVLPQSVLALAKVKPPICM 704          
BLAST of DY305997 vs. ExPASy Swiss-Prot
Match: YSL10_ORYSJ (Probable metal-nicotianamine transporter YSL10 OS=Oryza sativa subsp. japonica GN=YSL10 PE=2 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 3.027e-70
Identity = 130/193 (67.36%), Postives = 152/193 (78.76%), Query Frame = 2
Query:   53 MMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFVWKKIDKAKAHAFGPAVASGLICGDXXXXXXXXXXALK*VKPQMGM 631
            M+ IVSTASDLTQDFKTGY+TLASPRSMFVSQVIGTA+GC+++P VFWLFYKAF D+G+PGSEY +P A+VYRNMA LGV+G  +LPK+CL LC   F AAI +NL RD    + ARF+PLPMAMAIPFYLGPYF IDMC+GSL+ FVW ++D A+A AF P VASGLICGD          AL  VKP + M
Sbjct:  473 MIGIVSTASDLTQDFKTGYMTLASPRSMFVSQVIGTAMGCVIAPSVFWLFYKAFHDIGMPGSEYPSPNALVYRNMAILGVQGLGSLPKHCLDLCIGFFVAAIAVNLARDLAAPKVARFLPLPMAMAIPFYLGPYFGIDMCIGSLIRFVWDRLDGARAKAFAPPVASGLICGDGIWTLPQSVLALAGVKPPICM 665          
BLAST of DY305997 vs. ExPASy Swiss-Prot
Match: YSL11_ORYSJ (Probable metal-nicotianamine transporter YSL11 OS=Oryza sativa subsp. japonica GN=YSL11 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 4.523e-66
Identity = 126/224 (56.25%), Postives = 159/224 (70.98%), Query Frame = 2
Query:    2 AGSSHXXXXXXXXXXXXMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFVWKKIDKAKAHAFGPAVASGLICGDXXXXXXXXXXALK*VKPQMGMHLFHGDPTACGKFL 673
            AG+SH            MMNIV TASDL QDFKTGY+TLASPRSMFVSQVIGTA+GC+++PCVFWLFYK+F+ +G     Y AP+ ++YRNMA LGV G S+LPK CL LCY+ F AA +INLI+D + +  A++IP+PMA AIPFYLGPYFAIDM +GS++L+ W+  +K +A +FGPAVASGL+CGD                PQ  + L + +P  C KFL
Sbjct:  487 AGASHGGVLVGLAACGVMMNIVGTASDLMQDFKTGYMTLASPRSMFVSQVIGTAMGCVIAPCVFWLFYKSFN-IGASDGAYPAPYTIMYRNMAILGVNGLSSLPKYCLTLCYIAFVAAFIINLIKDLVPERVAKYIPIPMAAAIPFYLGPYFAIDMFMGSVILYFWEWRNKDEAQSFGPAVASGLMCGDGLW-----------ALPQAVLSLVNVNPPLCMKFL 698          
BLAST of DY305997 vs. ExPASy Swiss-Prot
Match: YSL6_ORYSJ (Probable metal-nicotianamine transporter YSL6 OS=Oryza sativa subsp. japonica GN=YSL6 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.839e-60
Identity = 110/194 (56.70%), Postives = 150/194 (77.32%), Query Frame = 2
Query:   53 MMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFVWKKIDKAKAHAFGPAVASGLICGDXXXXXXXXXXALK*VKPQMGMH 634
            MM+IVSTA+DL QDF+TGYLTL+SPRSMFVSQ+IGT +GCI++P  FWL++ AFD +G P   + AP+A++YR M+ LGVEGFSALP++CL +C V F AAI+INL+RD   K  ++FIPLPMAMA+PFY+G YFAIDM VG+++LFVW+++++ ++  F  A+ASGLICGD          ++  + P M M+
Sbjct:  479 MMSIVSTAADLMQDFRTGYLTLSSPRSMFVSQLIGTTLGCIIAPLTFWLYWTAFD-IGNPDGMFKAPYAVIYREMSILGVEGFSALPQHCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYFAIDMFVGTVILFVWERVNRKESEDFAGAIASGLICGDGIWSVPSAILSIMRIDPPMCMY 671          
BLAST of DY305997 vs. ExPASy Swiss-Prot
Match: YSL6_ARATH (Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 5.355e-59
Identity = 107/194 (55.15%), Postives = 148/194 (76.29%), Query Frame = 2
Query:   53 MMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFVWKKIDKAKAHAFGPAVASGLICGDXXXXXXXXXXALK*VKPQMGMH 634
            MM+IVSTA+DL QDFKTGYLTL+S +SMFVSQ++GTA+GC+++P  FWLF+ AFD +G P   Y AP+A+++R MA LG+EGF+ LPK+CL LCY  F AA+++NL+RD    + ++FIP+PMAMA+PFY+G YFAIDM VG+++LFVW++I++  A  F  AVASGLICGD          ++  + P + M+
Sbjct:  477 MMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLVGTAMGCVIAPLTFWLFWTAFD-IGDPNGPYKAPYAVIFREMAILGIEGFAELPKHCLALCYGFFIAALIVNLLRDITPPKISQFIPIPMAMAVPFYIGAYFAIDMFVGTVILFVWERINRKDAEDFAGAVASGLICGDGIWTIPSAILSILRINPPICMY 669          
The following BLAST results are available for this feature:
BLAST of DY305997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
YSL5_ARATH3.811e-8167.62Probable metal-nicotianamine transporter YSL5 OS=A... [more]
YSL8_ARATH8.490e-8169.05Probable metal-nicotianamine transporter YSL8 OS=A... [more]
YSL7_ARATH1.074e-7564.29Probable metal-nicotianamine transporter YSL7 OS=A... [more]
YSL14_ORYSJ3.125e-7565.71Probable metal-nicotianamine transporter YSL14 OS=... [more]
YSL12_ORYSJ5.330e-7566.19Probable metal-nicotianamine transporter YSL12 OS=... [more]
YSL13_ORYSJ1.715e-7364.11Probable metal-nicotianamine transporter YSL13 OS=... [more]
YSL10_ORYSJ3.027e-7067.36Probable metal-nicotianamine transporter YSL10 OS=... [more]
YSL11_ORYSJ4.523e-6656.25Probable metal-nicotianamine transporter YSL11 OS=... [more]
YSL6_ORYSJ2.839e-6056.70Probable metal-nicotianamine transporter YSL6 OS=O... [more]
YSL6_ARATH5.355e-5955.15Probable metal-nicotianamine transporter YSL6 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM3AG04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305997 ID=DY305997; Name=DY305997; organism=Citrus sinensis; type=EST; length=1269bp
GGCTGGTTCTTCTCACGGTGGAGTTCTTGCTGGCCTTGCGGCATGCGGAG
TCATGATGAACATTGTTTCAACTGCCTCTGACCTCACACAAGATTTCAAG
ACAGGTTACCTTACCCTGGCTTCTCCTCGATCCATGTTTGTTAGCCAAGT
GATTGGCACCGCAATAGGCTGCATAGTTTCCCCATGTGTCTTTTGGCTTT
TCTACAAGGCCTTCGATGACCTTGGGGTTCCCGGAAGTGAATATGCTGCT
CCGTTTGCCATGGTTTATCGTAACATGGCTAAGTTGGGGGTTGAGGGTTT
CTCAGCTTTGCCAAAGAATTGTCTCTTGCTTTGCTATGTGCTTTTCGGAG
CAGCCATTGTGATAAATCTGATTAGGGATTCAATACGCAAGGAGTGGGCA
AGGTTCATTCCTCTCCCAATGGCAATGGCAATTCCTTTTTACTTGGGGCC
GTACTTTGCCATTGATATGTGTGTTGGAAGCCTGCTTTTGTTCGTCTGGA
AAAAGATAGACAAGGCAAAAGCACATGCTTTTGGTCCAGCAGTTGCTTCC
GGTTTAATTTGTGGCGATCGAATAAGCATTTTGCGCATTTCAATACTTGC
GCTAAAATAGGTCAAACCCCAAATGGGCATGCATTTATTTCATGGAGACC
CGACCGCGTGTGGGAAATTTCTTAAGAATTTATGGTAAATCAAATCCAAA
AGAATTGGAAAGAACTCCAGAAAGGAAAAACATCGGGCTCCTAACTCGAA
CAAATGAACACTGCTTTGAACACCGCCAAACCTGGACCATTCAGGGAACC
ACCCTTGGCTGGAAGGCCGGAGAGGAATACGAACCTTTGAAGTACCAAGT
AGCAGAATTATCTTTATTTCTGAAAACTTATTTATTCGAGGTGAAAGAAG
GGTTTCTCCCTATAAATAAAAACTGGCCGCAATCACTAAAACAATGATTG
AAAAAACATACTCTAAGCGAGAGGGAAAACGTTTAATAAAAAAATACCCC
ACTTCCTATAGTATATATATAAACAATCAATAAACAACCCACAAGAGCGG
GTGAATTTGAAATATTTTCTTGGAAGAAAAAGTGATCAATAAACTAAAAC
AGTGGGCGGATAGCGACGCAGAGGAGACGTGCTACCACATAGATAAGAGT
ACTACCTCTAATGCTAACTGAGGAACCATAAGCACAGCCCCACATTTGGA
AGGACACATGGTGCGATCTCTGACTCTAAATCCATTACCTGATTCTTTGT
TATTGTATGAACAGCGGAC
back to top