EY680137 | Citrus Genome Database

Overview


Name	EY680137
Unique Name	EY680137
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	780

Libraries


Library Name	Type
Sweet orange leaf, young greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY680137 vs. ExPASy Swiss-Prot
Match: RS16_ROSDO (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.604e-14
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 3

Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFERVKYW 500
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YW
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQYW 62

HSP 2 Score: 20.7866 bits (42), Expect = 5.604e-14
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1

Query:  502 LSVGAQPSDPVQRIL 546
            L  GAQP+D V R+L
Sbjct:   63 LGQGAQPTDRVARML 77

[Close]

BLAST of EY680137 vs. ExPASy Swiss-Prot
Match: RS16_SILPO (30S ribosomal protein S16 OS=Silicibacter pomeroyi GN=rpsP PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.694e-14
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 3

Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFERVKYW 500
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YW
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQYW 62

[Close]

BLAST of EY680137 vs. ExPASy Swiss-Prot
Match: RS16_DINSH (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.437e-14
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 3

Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFERVKYW 500
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV+YW
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQYW 62

[Close]

BLAST of EY680137 vs. ExPASy Swiss-Prot
Match: RS16_SPHWW (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.187e-13
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 3

Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFERVKYW 500
            M V IRLAR G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ +R K+W
Sbjct:    1 MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAKHW 62

HSP 2 Score: 24.2534 bits (51), Expect = 1.187e-13
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1

Query:  502 LSVGAQPSDPVQRIL 546
            LSVGAQP+D V R L
Sbjct:   63 LSVGAQPTDRVARFL 77

[Close]

BLAST of EY680137 vs. ExPASy Swiss-Prot
Match: RS16_RHORT (30S ribosomal protein S16 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsP PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.061e-13
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 3

Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFERVKYW 500
            M +RIRLAR G K +PFYR++ ADSRSPRDG+ +E LG ++P+  +D  +R+ L  ERVKYW
Sbjct:    1 MSLRIRLARGGAKKRPFYRIVVADSRSPRDGRFIEKLGTFDPMLPRDHERRVVLKDERVKYW 62

HSP 2 Score: 21.1718 bits (43), Expect = 2.061e-13
Identity = 10/15 (66.67%), Postives = 10/15 (66.67%), Query Frame = 1

Query:  502 LSVGAQPSDPVQRIL 546
            L VGA PSD V R L
Sbjct:   63 LGVGALPSDRVARFL 77

[Close]

BLAST of EY680137 vs. ExPASy Swiss-Prot
Match: RS16_RHOS5 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.104e-13
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 3

Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFERVKYW 500
            M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N ERV+YW
Sbjct:    1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQYW 62

HSP 2 Score: 21.9422 bits (45), Expect = 2.104e-13
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1

Query:  502 LSVGAQPSDPVQRIL 546
            LS GAQP+D V R L
Sbjct:   63 LSQGAQPTDRVARFL 77

[Close]

BLAST of EY680137 vs. ExPASy Swiss-Prot
Match: RS16_RHIME (30S ribosomal protein S16 OS=Rhizobium meliloti GN=rpsP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.480e-13
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 3

Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFERVKYW 500
            M ++IRLAR G K +P+Y+++ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN ERV++W
Sbjct:    1 MALKIRLARGGSKKRPYYQIVVADARSPRDGRFLEKLGSWNPMLAKDDEKRIELNAERVQHW 62

HSP 2 Score: 21.1718 bits (43), Expect = 3.480e-13
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 1

Query:  502 LSVGAQPSDPVQRILFRA 555
            ++ GAQP+D V R L +A
Sbjct:   63 IAQGAQPTDRVMRFLDQA 80

[Close]

BLAST of EY680137 vs. ExPASy Swiss-Prot
Match: RS16_RHOS4 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.553e-13
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 3

Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFERVKYW 500
            M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N ERV+YW
Sbjct:    1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYW 62

HSP 2 Score: 20.7866 bits (42), Expect = 3.553e-13
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1

Query:  502 LSVGAQPSDPVQRIL 546
            L+ GAQP+D V R L
Sbjct:   63 LAQGAQPTDRVARFL 77

[Close]

BLAST of EY680137 vs. ExPASy Swiss-Prot
Match: RS16_RHOS1 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.553e-13
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 3

Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFERVKYW 500
            M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N ERV+YW
Sbjct:    1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYW 62

HSP 2 Score: 20.7866 bits (42), Expect = 3.553e-13
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1

Query:  502 LSVGAQPSDPVQRIL 546
            L+ GAQP+D V R L
Sbjct:   63 LAQGAQPTDRVARFL 77

[Close]

BLAST of EY680137 vs. ExPASy Swiss-Prot
Match: RS16_RHILW (30S ribosomal protein S16 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpsP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 3

Query:  315 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDCGKRMGLNFERVKYW 500
            M ++IRLAR G K +P+Y V+ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN ER+K+W
Sbjct:    1 MALKIRLARGGSKKRPYYHVVLADARSPRDGRFLENLGSWNPMLAKDDEKRVQLNAERIKHW 62

The following BLAST results are available for this feature:

BLAST of EY680137 vs. ExPASy Swiss-Prot

BLAST of EY680137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129


Match Name	E-value	Identity	Description
RS16_ROSDO	5.604e-14	56.45	30S ribosomal protein S16 OS=Roseobacter denitrifi...	[more]
RS16_SILPO	5.694e-14	56.45	30S ribosomal protein S16 OS=Silicibacter pomeroyi...	[more]
RS16_DINSH	7.437e-14	56.45	30S ribosomal protein S16 OS=Dinoroseobacter shiba...	[more]
RS16_SPHWW	1.187e-13	53.23	30S ribosomal protein S16 OS=Sphingomonas wittichi...	[more]
RS16_RHORT	2.061e-13	56.45	30S ribosomal protein S16 OS=Rhodospirillum rubrum...	[more]
RS16_RHOS5	2.104e-13	54.84	30S ribosomal protein S16 OS=Rhodobacter sphaeroid...	[more]
RS16_RHIME	3.480e-13	53.23	30S ribosomal protein S16 OS=Rhizobium meliloti GN...	[more]
RS16_RHOS4	3.553e-13	54.84	30S ribosomal protein S16 OS=Rhodobacter sphaeroid...	[more]
RS16_RHOS1	3.553e-13	54.84	30S ribosomal protein S16 OS=Rhodobacter sphaeroid...	[more]
RS16_RHILW	4.820e-13	54.84	30S ribosomal protein S16 OS=Rhizobium leguminosar...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-650-007-G11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY680137 ID=EY680137; Name=EY680137; organism=Citrus sinensis; type=EST; length=780bp
CACGCCACGACACAGCTGCGCCACGTTATAGCCGCTGATAGCCTCACGCG
TCACCACGACAGGCACGAGCCGCCGACAGCCTCTGAGCCTCAGCCCAAAA
CAGTCGCAGTTCTGCCGACGGCCTCACCACACGTCAGCCTCATCTCTCCT
CTCTCAAATCAGCGTCAGTCCACAACAACCGTACCAAAGCAGCCTCAATC
GACTACAGAAACCCACGACCGCAGCTCACGGCAGCAGCCCACGAGTCCAC
GACAACAACCTCAGCGAACCAGCCTCAGCAAAAAAAGAGCAGAGGGTATC
CAGGAAAAGAAAAGATGGTGGTGAGGATCCGATTGGCGAGATTCGGATGT
AAGAACAAACCTTTCTATCGGGTGATGGCTGCTGATAGCCGATCACCCAG
AGATGGCAAGCATCTTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTC
AAGACTGCGGCAAAAGAATGGGTCTGAATTTTGAAAGAGTGAAGTATTGG
GCTATCAGTTGGTGCCCAACCATCAGACCCTGTCCAGCGCATTCTTTTCA
GGGCAGGGTTACTACCCCCCCCCCCAATGGGGGGAATGGGACCCAAAAGT
GGACCACGTGGAAACAGTTCCGGGCGAATCTTATGAACGGGACCTGGTTT
TTGGGAAAAGCCCAACCATTGGTAAAACAAAAAAAAAAGCTGGAAGGGGA
GGGAAGGGAAAGGGGGGCCCCCTTGGAAAGGGGTTTTTAAACCCCTGGCC
CTTATTTTTCCCAAAAAAAAAAAAAAAGTT