DY305959

Overview
NameDY305959
Unique NameDY305959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1271
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305959_ssr515 microsatellite DY305959_ssr515:515..524. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6793 contig Csv1_Contig6793:1..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305959 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.920e-40
Identity = 114/324 (35.19%), Postives = 161/324 (49.69%), Query Frame = 1
Query:   55 NNSSRINLEPKNRTF-PEEIVRKY-----CPDGQKKSQYNDNLHINAGGDKHHREGFWYEADKSTSNFYVNEPEYNWGYSCNGHFYADSMVDSRAFIQKVTCGAAVIDASLYDEARLCPNSLKYYGFCLRNGNYTVSLLFSEIVFAKNDDYSSSAKRVFDIYIQSELMRKDFNIKEVARHSNNVTIQNFTASVHDHLLEIELFWAGKGSLLNP-PYFHGPLISAISV------TPNFGVSRSRLSKXXXXXXXXXXXXXXXXXXXXMWRLGWI---GERELRVTTVNLRGKSYPLKQLKVATPNFSPRNELGSGRFGTLNQGEL 978
            N   +I+L   N +  P   V KY     C    +  +  + LHIN GGD+    G  YE+DK        E    W  +  G F  D  V  R  I+  +    V+D  LY +AR+   SL YY  CL NGNY V+L F+EI+F  N++Y S  +R FDIYIQ +L  KDFNI + A+   NV I+ F   + D  LEI L+WAG+G+ + P    +GPLISAISV      +P  G+S   L                      +W+ G++    + E    ++ L   S+ L+Q+K+AT NF   N +G G FG + +G+L
Sbjct:  324 NKGYKIDLSYNNFSVDPTNAVCKYNNVLSCMRNYQCPKTFNALHINCGGDEMSINGTIYESDKYDRLESWYESRNGWFSNNVGVFVDDKHVPERVTIESNSSELNVVDFGLYTQARISAISLTYYALCLENGNYNVNLHFAEIMFNGNNNYQSLGRRFFDIYIQRKLEVKDFNIAKEAKDVGNVVIKTFPVEIKDGKLEIRLYWAGRGTTVIPKERVYGPLISAISVDSSVNPSPRNGMSTGTL----HTLVVILSIFIVFLVFGTLWKKGYLRSKSQMEKDFKSLELMIASFSLRQIKIATNNFDSANRIGEGGFGPVYKGKL 643          
BLAST of DY305959 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.065e-38
Identity = 109/340 (32.06%), Postives = 164/340 (48.24%), Query Frame = 1
Query:    1 LAYNEFIFPEPETHKNLPNNSSRINLEPKNRTFPEEIVRKYCPDGQKKSQYNDNLHINAGGD----KHHREGFWYEADKSTSNF---YVNEPEYNWGYSCNGHFYADSMVDSRAFIQKVTCGAAVIDASLYDEARLCPNSLKYYGFCLRNGNYTVSLLFSEIVFAKNDDYSSSAKRVFDIYIQSELMRKDFNIKEVARHSNNVTIQNFTASVHDHLLEIELFWAGKGSLLNPPY-FHGPLISAISVTPNFGV---SRSRLSKXXXXXXXXXXXXXXXXXXXXMWRLGWI---GERELRVTTVNLRGKSYPLKQLKVATPNFSPRNELGSGRFGTLNQGEL 978
            L+YN   +  PE+    PN +  +NL     T         C    K  +Y+  LH+N GG     K  +    YE D +       Y  +P+ NWG+S  G F  D+   +  F   V    A   + LY  AR+ P SL Y+  CL NGNYT++L F+EI F  +++Y+   +R+FDIYIQ +L+ KDFNI + A+ +    I+  TA V +H L I L WAGKG+   P    +GP+ISAIS+  +       ++ +S                     +W  G +   G +        L   ++ L+Q+K AT +F+P N++G G FG + +G L
Sbjct:  365 LSYNNLKWQSPESRACRPNMNLNLNLFQSTSTKKSSKFLP-CIKDFKCPRYSSCLHVNCGGSDMYVKEKKTKELYEGDGNVEGGAAKYFLKPDANWGFSSTGDFMDDNNFQNTRFTMFVP---ASNQSDLYKSARIAPVSLTYFHACLENGNYTINLDFAEIRFTNDENYNRLGRRLFDIYIQEKLVAKDFNIMDEAKGAQTPIIKPLTAYVTNHFLTIRLSWAGKGTTRIPTRGVYGPIISAISIVSDSKPCERPKTGMSPGAYIAIGIGAPCLIIFILGFLWICGCLPRCGRQRKDPYEEELPSGTFTLRQIKFATDDFNPTNKIGEGGFGAVFKGVL 700          
BLAST of DY305959 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.507e-34
Identity = 103/285 (36.14%), Postives = 147/285 (51.58%), Query Frame = 1
Query:  163 LHINAGGD--KHHREGFWYEADKST--SNFYVNEPEYNWGYSCNGHFYADSMVDSRAFIQ---KVTCGAAVIDASLYDEARLCPNSLKYYGFCLRNGNYTVSLLFSEIVFAKNDDYSSSAKRVFDIYIQSELMRKDFNIKEVARHSNNVTIQNFTASVHDHLLEIELFWAGKGSLLNP-PYFHGPLISAISVTPNFGVSRSRLSKXXXXXXXXXXXXXXXXXXXXMWRLGWIGERELRVTTVNLRG-----KSYPLKQLKVATPNFSPRNELGSGRFGTLNQGEL 978
            L+IN GG   K  +E   Y+AD     ++ YV      W  S  G+F  +        +Q   +++  A+     LY  AR+ P SL YYG CL NGNYTV+L F+EI+F  ++   S  KR+FDIY+Q +L+ K+FNI+E AR S    I++F  +V DH L+I L WAGKG+   P    +GP+ISAISV PNF       +K                    +  + W   R+       LRG      ++ L+Q+K AT NF    ++G G FG++ +GEL
Sbjct:  415 LYINCGGGEVKVDKE-ITYQADDEPKGASMYVLGANKRWALSSTGNFMDNDDDADEYTVQNTSRLSVNASSPSFGLYRTARVSPLSLTYYGICLGNGNYTVNLHFAEIIFTDDNTLYSLGKRLFDIYVQDQLVIKNFNIQEAARGSGKPIIKSFLVNVTDHTLKIGLRWAGKGTTGIPIRGVYGPMISAISVEPNFKPPVYYDTKDIILKVGVPVAAATLLLFIIV-GVFWKKRRDKNDIDKELRGLDLQTGTFTLRQIKAATDNFDVTRKIGEGGFGSVYKGEL 697          
BLAST of DY305959 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.740e-33
Identity = 109/316 (34.49%), Postives = 157/316 (49.68%), Query Frame = 1
Query:  124 CPDGQKKSQYNDNLHINAGGDKHHREGFWYEAD-KSTSNFYVNEPEYNWGYSCNGHFYADSMVDSRAFIQKVTCGAAVIDASL---YDEARLCPNSLKYYGFCLRNGNYTVSLLFSEIVFAKNDDYSSSAKRVFDIYIQSELMRKDFNIKEVARHSNNVTIQNFT-ASVHDHLLEIELFWAGKGSLLNPPY-FHGPLISAISVTPNFGVSRSR-LSKXXXXXXXXXXXXXXXXXXXXMWRL-GWIGEREL----RVTTVNLRGKSYPLKQLKVATPNFSPRNELGSGRFGTLNQGELPN-QTGTGKKLPSHPSEVN 1032
            CP+  K+S    +L IN GG +       Y  D  S      +     WGYS +G +         A     T    +I+ S    Y  ARL P SLKYYG CLR G+Y + L F+EI+F+ +  ++S  +R+FDIY+Q  L+ +DFNI E A       I+      V+   LEI L W GKG+ + P    +GPLISAI++TPNF V   + LS                     + RL G++G +E+     +  ++L+  S+ LKQ+K AT NF P N++G G FG + +G L +  T   K+L S   + N
Sbjct:  401 CPEDAKQS----SLFINCGGSRLKIGKDTYTDDLNSRGQSTFSSVSERWGYSSSGVWLGKEDAGYLA-----TDRFNLINGSTPEYYKTARLSPQSLKYYGLCLRRGSYKLQLHFAEIMFSNDQTFNSLGRRIFDIYVQGNLLERDFNIAERAGGVGKPFIRQIDGVQVNGSTLEIHLQWTGKGTNVIPTRGVYGPLISAITITPNFKVDTGKPLSNGAVAGIVIAACAVFGLLVLVILRLTGYLGGKEVDENEELRGLDLQTGSFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGN 707          
BLAST of DY305959 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 3.877e-33
Identity = 105/308 (34.09%), Postives = 163/308 (52.92%), Query Frame = 1
Query:  151 YNDNLHINAGGD--KHHREGFWYEADKSTSNFYVNEPEYNWGYSCNGHFYADSMVDSRAFIQKVTCGAAVIDASL---YDEARLCPNSLKYYGFCLRNGNYTVSLLFSEIVFAKNDDYSSSAKRVFDIYIQSELMRKDFNIKEVARHSNNVTIQNF-TASVHDHLLEIELFWAGKGSLLNPPY-FHGPLISAISVTPNFGVSRSR-LSKXXXXXXXXXXXXXXXXXXXXMWRL-GWIGEREL----RVTTVNLRGKSYPLKQLKVATPNFSPRNELGSGRFGTLNQGELPN-QTGTGKKLPSHPSEVN 1032
            ++ +L IN GG+  K  ++ +  + +K  ++ + +  E  WGYS +G +  +   D   ++   T    +I+ S    Y  ARL   SLKYYG C+R G+Y V L F+EI+F+ +  YSS  +R+FDIY+Q  L+ +DFNI + A       ++      V+   LEI L W GKG+ + P    +GPLISAI+VTPNF V   + LS                     + RL G++G +E+     +  ++L+  S+ LKQ+K AT NF P N++G G FG + +G L +  T   K+L S   + N
Sbjct:  404 HHSSLFINCGGNRLKVDKDEYADDLNKRGASTFSSVSE-RWGYSSSGAWLGN---DGATYLATDTFN--LINESTPEYYKTARLASQSLKYYGLCMRRGSYKVQLYFAEIMFSNDQTYSSLGRRLFDIYVQGILLERDFNIAQRAGGVGKPFLRQVDEVQVNGSTLEIHLKWTGKGTNVIPTRGVYGPLISAITVTPNFKVDTGKPLSNGVVAGIVIAACVAFGLLVLVILRLTGYLGGKEVDENEELRGLDLQTGSFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGN 705          
BLAST of DY305959 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.336e-25
Identity = 103/328 (31.40%), Postives = 157/328 (47.87%), Query Frame = 1
Query:   88 NRTFPE-EIVRKYCPDGQKKSQYNDNLHINAGG-DKHHREGFWYEA---DKSTSNFYVNEPEYNWGYSCNGHFYADSMVDSRAFIQKVTCGAAVIDASLYDEARLCPNSLKYYGFCLRNGNYTVSLLFSE--IVFAKNDDYSSSAKRVFDIYIQSELMRKDFNIKEVARHSNNVTIQN-FTASVHDHLLEIELFWAGKGSLLNP-PYFHGPLISAISVTPNF--GVSRSRLSKXXXXXXXXXXXXXXXXXXXXMWR--LGWIGERELRVTT------VNLRGKSYPLKQLKVATPNFSPRNELGSGRFGTLNQGELPNQTGTGKKLPS 1014
            NR  P    ++K  P  + K  Y+D   IN GG +K    G  +E    D   ++F+V+  +  W  S  G F   S     A  Q        +D+ L+  ARL  +S++YYG  L NG YTV+L F+E  I+ + +  +    +R FDIY+Q  L+ KDF+++  A  S    +Q  + A+V ++ LE+ LFWAGKG+   P    +GPLISA+S TP+F   V+    SK                    +    +  I +R  R T       ++++   +   +LK AT +F P N+LG G FG + +G L +      KL S
Sbjct:  402 NRVLPGLNCLQKNFPCNRGKGIYSD-FSINCGGPEKRSVTGALFEREDEDFGPASFFVSAGQ-RWAASSVGLFAGSSNNIYIATSQSQFVNT--LDSELFQSARLSASSVRYYGLGLENGGYTVTLQFAEIQILGSTSTTWKGLGRRRFDIYVQGRLVEKDFDVRRTAGDSTVRAVQRVYKANVSENHLEVHLFWAGKGTCCIPIQGAYGPLISAVSATPDFTPTVANKPPSKGKNRTGTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELLGMDVKPYIFTYSELKSATQDFDPSNKLGEGGFGPVYKGNLNDGRVVAVKLLS 725          
BLAST of DY305959 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.519e-24
Identity = 100/325 (30.77%), Postives = 154/325 (47.38%), Query Frame = 1
Query:  112 VRKYCPDGQKKSQYNDNLHINAGGDK--------HHREGFWYEADKSTSNFYVNEPEYNWGYSCNGHFYADS--MVDSRAFIQKVTCGAAVIDASLYDEARLCPNSLKYYGFCLRNGNYTVSLLFSE--IVFAKNDDYSSSAKRVFDIYIQSELMRKDFNIKEVARHSNNVTIQ-NFTASVHDHLLEIELFWAGKGSLLNP-PYFHGPLISAISVTPNF----GVSRSRLSKXXXXXXXXXXXXXXXXXXXXMWRLGWIGERELRVT------TVNLRGKSYPLKQLKVATPNFSPRNELGSGRFGTLNQGELPNQTGTGKKLPS 1014
            ++K  P  + K  Y+D   IN GG +          RE    + D   ++F V+  +  W  S  G F   S  +  S +  Q V      +D+ L+  ARL  +SL+YYG  L NG YTV+L F+E  I+ + ++ +    +R FDIY+Q  L+ KDF+++  A  S    +Q  + A+V  + LEI LFWAGKG+   P    +GPLISA+  TP+F    G       K                       +  I +R  R T      +++++  ++   +LK AT +F P N+LG G FG + +G+L +      KL S
Sbjct:  410 LQKNFPCNRGKGIYSD-FSINCGGPEIRSVTEAVFERE----DEDLGPASFVVSAGQ-RWAASSVGLFAGSSNNIYISTSQSQFVN----TLDSELFQSARLSASSLRYYGLGLENGGYTVTLQFAEIQILGSTSNTWRGLGRRRFDIYVQGRLVEKDFDVRRTAGDSTVRAVQREYKANVSQNHLEIHLFWAGKGTCCIPIQGAYGPLISAVGATPDFTPTVGNRPPSKGKSMTGTIVGVIVGVGLLSIISGVVIFIIRKRRKRYTDDEEILSMDVKPYTFTYSELKSATQDFDPSNKLGEGGFGPVYKGKLNDGREVAVKLLS 724          
The following BLAST results are available for this feature:
BLAST of DY305959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y1534_ARATH1.920e-4035.19Probable LRR receptor-like serine/threonine-protei... [more]
RKF1_ARATH3.065e-3832.06Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH3.507e-3436.14Probable LRR receptor-like serine/threonine-protei... [more]
Y5343_ARATH1.740e-3334.49Probable LRR receptor-like serine/threonine-protei... [more]
Y5344_ARATH3.877e-3334.09Probable LRR receptor-like serine/threonine-protei... [more]
Y1561_ARATH1.336e-2531.40Probable LRR receptor-like serine/threonine-protei... [more]
Y5614_ARATH2.519e-2430.77Probable LRR receptor-like serine/threonine-protei... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAM3AB11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305959 ID=DY305959; Name=DY305959; organism=Citrus sinensis; type=EST; length=1271bp
CTTGCATACAATGAATTCATATTTCCAGAACCAGAGACACACAAGAATCT
TCCCAACAACAGTTCTCGGATAAATCTTGAACCTAAGAATCGGACATTTC
CGGAAGAGATTGTGAGGAAGTATTGCCCCGATGGCCAGAAGAAATCTCAG
TACAATGATAATTTGCATATAAATGCTGGTGGCGATAAACATCACAGGGA
AGGATTTTGGTATGAGGCAGATAAATCGACATCAAATTTTTATGTTAACG
AACCGGAATACAACTGGGGATATAGCTGTAACGGACATTTCTATGCGGAT
TCAATGGTTGATTCACGTGCATTTATACAGAAAGTAACGTGTGGAGCTGC
AGTGATTGATGCATCTTTATATGACGAAGCTCGCCTTTGCCCCAATTCTC
TCAAATACTATGGTTTTTGCTTGCGAAACGGCAATTACACTGTCAGTCTT
TTGTTCTCTGAGATTGTTTTTGCAAAAAATGATGATTACAGCAGTTCAGC
AAAACGTGTATTTGATATATATATACAGAGCGAGCTAATGCGAAAGGATT
TCAACATAAAAGAAGTGGCCAGGCATTCAAATAATGTAACGATTCAGAAT
TTCACGGCTTCTGTACACGACCATCTACTGGAAATCGAGTTATTCTGGGC
TGGCAAAGGATCTTTATTAAACCCACCTTATTTTCATGGACCTCTCATAT
CAGCTATTTCTGTAACTCCAAATTTCGGAGTCAGCCGATCACGACTATCT
AAGATAGGGATAGTAGCAATTGTACTTGGGGCTGTGCTGGCGTTGATTCT
TTTCTTGGCTCTCATGTGGAGATTAGGATGGATAGGAGAACGAGAATTGC
GTGTGACAACGGTCAACCTACGAGGGAAGTCTTACCCCCTCAAACAATTG
AAAGTCGCTACTCCAAATTTCAGCCCCAGGAATGAATTGGGCTCGGGGCG
TTTTGGGACATTAAACCAGGGTGAATTGCCCAATCAAACTGGAACGGGGA
AAAAGCTTCCTTCCCATCCAAGCGAGGTGAATTGTTAAATAGGGAACGGA
AGTTTATGCCCTTTAAAACCCGGGAAAACGGGAAAATTAGGTCCAAAATT
TTTGGGAAGGGGTTATTCTCAAAAAAAAAACACCCCACACTGGCCCCCCC
CCACACAAATAAAAGGGGGAAAAAAGGGGTATCCCTTTGGAACAGGAACC
CCGGGGGTTGTGGGGCGCCACCTTTTTTCTTCCCCCCCCGCCGACTCTTG
TGTGGGGGGGGGGCGCCGCGC
back to top