DY305957

Overview
NameDY305957
Unique NameDY305957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1282
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6792 contig Csv1_Contig6792:1..1282. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305957 vs. ExPASy Swiss-Prot
Match: NIR_BETVE (Ferredoxin--nitrite reductase, chloroplastic OS=Betula verrucosa GN=NIR1 PE=2 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 4.703e-103
Identity = 176/225 (78.22%), Postives = 197/225 (87.56%), Query Frame = 1
Query:  226 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLADAYGSGELRLTVEQNIIIPNVDNS-XXXXXXXXXXXXXFSPHPSFLMKGLIACPGNSF 897
            PRKWNVCVVGSHDL+EHPHINDLAYMPA KDGRFGFNLLVGGFFSP+RCAEA+PLDAWV+ADD+I VCKA+LEAYRDLG+RGNRQKTRMMWLIDELGIEGFR+EVV+RMP QEL+RA+ EDL+++QW+RR+ +GVHPQKQEG +YVGLHIPVGRVQA DMDELARLAD YG GELRLTVEQNIIIPN++NS              FSP P  LMKGL+AC GN F
Sbjct:  242 PRKWNVCVVGSHDLFEHPHINDLAYMPAIKDGRFGFNLLVGGFFSPRRCAEAVPLDAWVSADDIILVCKAILEAYRDLGTRGNRQKTRMMWLIDELGIEGFRSEVVKRMPNQELERAAPEDLIEKQWERRELIGVHPQKQEGLSYVGLHIPVGRVQADDMDELARLADTYGCGELRLTVEQNIIIPNIENSKLEALLGEPLLKDRFSPEPPILMKGLVACTGNQF 466          
BLAST of DY305957 vs. ExPASy Swiss-Prot
Match: NIR_ARATH (Ferredoxin--nitrite reductase, chloroplastic OS=Arabidopsis thaliana GN=NIR1 PE=1 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 2.581e-101
Identity = 175/225 (77.78%), Postives = 193/225 (85.78%), Query Frame = 1
Query:  226 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLADAYGSGELRLTVEQNIIIPNVDNS-XXXXXXXXXXXXXFSPHPSFLMKGLIACPGNSF 897
            PRKWNVCVVG+HDLYEHPHINDLAYMPA KDGRFGFNLLVGGFFSPKRC EAIPLDAWV ADDV+P+CKAVLEAYRDLG+RGNRQKTRMMWLIDELG+EGFR EV +RMP  +L+R SSEDLV +QW+RRDY GV+PQKQEG ++VGLH+PVGR+QA DMDELARLAD YGSGELRLTVEQNIIIPNV+ S              FSP PS LMKGL+AC G+ F
Sbjct:  245 PRKWNVCVVGTHDLYEHPHINDLAYMPANKDGRFGFNLLVGGFFSPKRCEEAIPLDAWVPADDVLPLCKAVLEAYRDLGTRGNRQKTRMMWLIDELGVEGFRTEVEKRMPNGKLERGSSEDLVNKQWERRDYFGVNPQKQEGLSFVGLHVPVGRLQADDMDELARLADTYGSGELRLTVEQNIIIPNVETSKTEALLQEPFLKNRFSPEPSILMKGLVACTGSQF 469          
BLAST of DY305957 vs. ExPASy Swiss-Prot
Match: NIR_ORYSJ (Ferredoxin--nitrite reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0357100 PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 3.488e-98
Identity = 168/224 (75.00%), Postives = 186/224 (83.04%), Query Frame = 1
Query:  226 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPHPSFLMKGLIACPGNSF 897
            PRKWNVCV+GSHDLYEHPHINDLAYMPA K G+FGFNLLVGGF SPKR  EA+PLDAWV  DD+IPVCKAVLEAYRDLG+RGNRQKTRMMWLIDELG+E FR+EV +RMP   L+RA+ EDL+ ++W RRDYLGVHPQKQEG +YVGLH+PVGRVQA DM ELARLAD YGSGELRLTVEQNI+IPNV N              FSP PS L+KGL+AC GN F
Sbjct:  256 PRKWNVCVIGSHDLYEHPHINDLAYMPAVKGGKFGFNLLVGGFISPKRWEEALPLDAWVPGDDIIPVCKAVLEAYRDLGTRGNRQKTRMMWLIDELGMEAFRSEVEKRMPNGVLERAAPEDLIDKKWQRRDYLGVHPQKQEGMSYVGLHVPVGRVQAADMFELARLADEYGSGELRLTVEQNIVIPNVKNEKVEALLSEPLLQKFSPQPSLLLKGLVACTGNQF 479          
BLAST of DY305957 vs. ExPASy Swiss-Prot
Match: NIR_MAIZE (Ferredoxin--nitrite reductase, chloroplastic (Fragment) OS=Zea mays GN=NIR PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 8.591e-97
Identity = 167/226 (73.89%), Postives = 188/226 (83.19%), Query Frame = 1
Query:  226 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLADAYGSGELRLTVEQNIIIPNVDNS--XXXXXXXXXXXXXFSPHPSFLMKGLIACPGNSF 897
            PRKWNVCV+GSHDLYEHPHINDLAYMPA KDG FGFNLLVGGF SPKR AEA+PLDAWVA DDV+PVCKA+LEAYRDLGSRGNRQKTRMMWLIDELG+E FR+EV +RMP   L+RA+ EDLV ++W+RRDYLGVHPQKQEG +YVGLH+PVGR+QA DM ELARLAD YG+GELRLTVEQNI++PNV N                 SP PS L++GL+AC GN F
Sbjct:  227 PRKWNVCVIGSHDLYEHPHINDLAYMPAVKDGEFGFNLLVGGFISPKRWAEALPLDAWVAGDDVVPVCKAILEAYRDLGSRGNRQKTRMMWLIDELGMEVFRSEVEKRMPNGVLERAAPEDLVDKRWERRDYLGVHPQKQEGLSYVGLHVPVGRLQAADMFELARLADEYGTGELRLTVEQNIVLPNVSNERLDALLAEPLLQEQRLSPRPSMLLRGLVACTGNQF 452          
BLAST of DY305957 vs. ExPASy Swiss-Prot
Match: NIR_SPIOL (Ferredoxin--nitrite reductase, chloroplastic OS=Spinacia oleracea GN=NIR PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 3.264e-96
Identity = 166/225 (73.78%), Postives = 192/225 (85.33%), Query Frame = 1
Query:  226 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLADAYGSGELRLTVEQNIIIPNVDNS-XXXXXXXXXXXXXFSPHPSFLMKGLIACPGNSF 897
            PRKWN CV+GSHDLYEHPHINDLAYMPATK+G+FGFNLLVGGFFS KRC EAIPLDAWV+A+DV+PVCKA+LEA+RDLG RGNRQK RMMWLIDELG+E FR EV +RMP Q L+RASSE+LVQ+ W+RR+YLGVHPQKQ+G ++VGLHIPVGR+QA +M+ELAR+AD YGSGELRLTVEQNIIIPNV+NS              +SP P  LMKGL+AC G+ F
Sbjct:  254 PRKWNPCVIGSHDLYEHPHINDLAYMPATKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSPEPPILMKGLVACTGSQF 478          
BLAST of DY305957 vs. ExPASy Swiss-Prot
Match: NIR_SYNE7 (Ferredoxin--nitrite reductase OS=Synechococcus elongatus (strain PCC 7942) GN=nirA PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 2.210e-60
Identity = 119/225 (52.89%), Postives = 154/225 (68.44%), Query Frame = 1
Query:  226 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAAD-DVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPHPSFLMKGLIACPGNSF 897
            PRK+N+ + G  D   H  INDLA+ PA +DG  GFN+ VGGFFS  R A AIPL+AWV AD  VI + +A+LE +RD GSRGNRQKTR+MWLIDE GIE FR +VV    G  L  A+ E +    W++RD+LGVHPQKQ G N+VGLH+PVGR+   D+ ELARLAD YG GE+RLTVEQN+I+ ++ ++             FSP P+ L +G ++C G+ +
Sbjct:  181 PRKFNIAIEGGRDNSIHAEINDLAFTPAYQDGTLGFNVWVGGFFSSTRVAPAIPLNAWVPADHSVIRLSRAILEVFRDNGSRGNRQKTRLMWLIDEWGIERFR-QVVSEAYGAPLAAAAPELM---DWEKRDFLGVHPQKQAGLNFVGLHVPVGRLTTEDLYELARLADTYGQGEVRLTVEQNVILTHIPDAQLPTLLAEPLLTRFSPQPAPLSRGTVSCTGSQY 401          
BLAST of DY305957 vs. ExPASy Swiss-Prot
Match: NIR_PHOLA (Ferredoxin--nitrite reductase OS=Phormidium laminosum GN=nirA PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 4.935e-52
Identity = 106/225 (47.11%), Postives = 146/225 (64.89%), Query Frame = 1
Query:  226 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLADAYGSGELRLTVEQNIIIPNV-DNSXXXXXXXXXXXXXFSPHPSFLMKGLIACPGNSF 897
            PRK+N+ + G  D   H  IND+A++PA KDG+ GFN+LVGGFFS KRC  A+PL+AWV   DV+ +C+A+L  YR  G   NRQK+R+MWLIDE G++ FRAEV +++ G  L  A+ +D +   WD+RD++G+H QK+ G NYVGL +PVGR+ A  M +LAR+A+ YG GE+RLTVE+          S             FS  P  L++ L++C G  F
Sbjct:  181 PRKFNIAIAGCRDNSVHAEINDIAFVPAYKDGKLGFNVLVGGFFSAKRCEAAVPLNAWVDPRDVVALCEAILIVYRITGCGANRQKSRLMWLIDEWGMDKFRAEVEQQL-GHPLQTAAPKDEI--LWDKRDHIGIHAQKKPGLNYVGLLVPVGRLYA-PMFDLARIAEVYGDGEMRLTVERKRDHSRTCPMSSVASLLKEPLLEKFSVSPGLLVRSLVSCTGAQF 401          
BLAST of DY305957 vs. ExPASy Swiss-Prot
Match: SIR1_MYCPA (Sulfite reductase [ferredoxin] 1 OS=Mycobacterium paratuberculosis GN=sir1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.716e-12
Identity = 66/225 (29.33%), Postives = 96/225 (42.67%), Query Frame = 1
Query:  226 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRF-GFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPHPSFLMKGLIACPGNSF 897
            PRK+   V G  D+    H  D+A++         G +L VGG  S      A  L  WV  D+V  V +AV + +RD G R  R K R+ +L+ + GIE FR  + +    + L    +   V+      D++GV   K  G N VG+    GRV    +  +A L +  GS   R T  Q ++I +V +                  PS   K  +AC G  F
Sbjct:  205 PRKYKTAVSGLQDVSHETH--DVAFVGVEHPEHGPGLDLWVGGGLSTNPML-AQRLSVWVPLDEVPDVWEAVTQLFRDYGYRRLRAKARLKFLVKDWGIEKFREILEQEYLNRRLIDGPAPAPVKH---TIDHVGVQKIK-NGLNAVGVAPIAGRVSGTTLSAVADLMEQVGSDRARWTPFQKLVILDVPDDKVDELVTGLDALGLPSRPSSWRKNTMACTGIEF 422          
BLAST of DY305957 vs. ExPASy Swiss-Prot
Match: CYSI_METPB (Sulfite reductase [NADPH] hemoprotein beta-component OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=cysI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.453e-11
Identity = 63/235 (26.81%), Postives = 112/235 (47.66%), Query Frame = 1
Query:  226 PRKWNVCVV----GSHDLYEHPHINDLAYMPAT--KDGRFGFNLLVGGFFSPKRC-AEAIPLDA----WVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGD-----MDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPHPSFLMKGLIAC 882
            PRK+   V        D++ H    DL ++     K+   G+N+ VGG         +  P  A    +V  +D +   +AV+   RD G+R NR+  R+ + I+  G++ FRAEV +R+ G++L+ A      +   DR  ++    + ++G +++ L++P GR++  D     +  L R+A+ +  G+ RLT  QN+II NV  +              +   S + +  IAC
Sbjct:  246 PRKFKTVVAVPPSNEVDIFAH----DLGFIAILDKKNRVTGWNVTVGGGMGMTHGETDTFPRTADVLGFVKPEDALKAAEAVMTVQRDWGNRKNRKNARLKYTIERFGLDAFRAEVEKRI-GKKLE-APKPFTFENNGDRYGWV----EGEDGRHHLTLYVPSGRIKDIDGGPQFLSGLRRIAEVH-EGDFRLTGNQNVIIANVPAAKRAEIDALVDEYGLTRGASAIRRNSIAC 469          
BLAST of DY305957 vs. ExPASy Swiss-Prot
Match: SIR_MYCTU (Sulfite reductase [ferredoxin] OS=Mycobacterium tuberculosis GN=sir PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.478e-11
Identity = 64/225 (28.44%), Postives = 96/225 (42.67%), Query Frame = 1
Query:  226 PRKWNVCVVGSHDLYEHPHINDLAYMPATKDGRF-GFNLLVGGFFSPKRCAEAIPLDAWVAADDVIPVCKAVLEAYRDLGSRGNRQKTRMMWLIDELGIEGFRAEVVRRMPGQELDRASSEDLVQRQWDRRDYLGVHPQKQEGFNYVGLHIPVGRVQAGDMDELARLADAYGSGELRLTVEQNIIIPNVDNSXXXXXXXXXXXXXFSPHPSFLMKGLIACPGNSF 897
            PRK+   + G  D+     IND+A++         G +L VGG  S      A  + AWV   +V  V  AV   +RD G R  R K R+ +LI + GI  FR  +      + L    + + V+      D++GV   K  G N VG+    GRV    +  +A L    GS  +R T  Q ++I ++ ++                 PS   + L+AC G  F
Sbjct:  205 PRKYKTAISGLQDVAHE--INDVAFIGVNHPEHGPGLDLWVGGGLSTNPML-AQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVKHP---IDHVGVQRLK-NGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSRPSHWRRNLMACSGIEF 422          
The following BLAST results are available for this feature:
BLAST of DY305957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
NIR_BETVE4.703e-10378.22Ferredoxin--nitrite reductase, chloroplastic OS=Be... [more]
NIR_ARATH2.581e-10177.78Ferredoxin--nitrite reductase, chloroplastic OS=Ar... [more]
NIR_ORYSJ3.488e-9875.00Ferredoxin--nitrite reductase, chloroplastic OS=Or... [more]
NIR_MAIZE8.591e-9773.89Ferredoxin--nitrite reductase, chloroplastic (Frag... [more]
NIR_SPIOL3.264e-9673.78Ferredoxin--nitrite reductase, chloroplastic OS=Sp... [more]
NIR_SYNE72.210e-6052.89Ferredoxin--nitrite reductase OS=Synechococcus elo... [more]
NIR_PHOLA4.935e-5247.11Ferredoxin--nitrite reductase OS=Phormidium lamino... [more]
SIR1_MYCPA1.716e-1229.33Sulfite reductase [ferredoxin] 1 OS=Mycobacterium ... [more]
CYSI_METPB1.453e-1126.81Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
SIR_MYCTU2.478e-1128.44Sulfite reductase [ferredoxin] OS=Mycobacterium tu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3AB07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305957 ID=DY305957; Name=DY305957; organism=Citrus sinensis; type=EST; length=1282bp
GGGTTATGATTTAAAGTTTAAGGGTCACAAGTTGTCTGGCTTTCTTTATA
TGAGCTCTGCTTCATATGAACTCTTCAATATAAGCAAATGATGAATAAAA
CGCATCGGTAACAGAAAGTTATCAAGTCTATGCGTGTTTTGTCGTGGATA
CAGAATTAACTTTTCATGTAAACGTACCGTTTAGCCGGTATCCCTCTTTC
CCATTTCGTTTTTCATTTGAGCAGGCCAAGGAAGTGGAATGTGTGTGTAG
TAGGATCACATGATCTTTATGAGCATCCTCACATCAATGATCTTGCTTAC
ATGCCTGCTACAAAGGATGGAAGGTTTGGATTCAACTTGTTGGTGGGCGG
GTTCTTTAGTCCCAAGAGGTGTGCAGAGGCAATCCCTCTTGACGCCTGGG
TCGCAGCTGATGACGTTATCCCAGTTTGCAAAGCAGTACTAGAGGCATAC
AGAGATCTTGGCTCCAGAGGAAACAGGCAAAAAACAAGAATGATGTGGTT
AATTGATGAACTCGGCATTGAAGGATTCAGGGCGGAGGTAGTGAGGAGAA
TGCCTGGACAGGAGCTTGATAGAGCATCCTCGGAAGACTTGGTTCAGAGG
CAATGGGACAGGAGAGACTATCTTGGTGTGCATCCACAAAAACAGGAAGG
ATTTAACTATGTAGGTCTTCATATTCCCGTTGGTCGAGTCCAAGCAGGTG
ATATGGACGAGCTAGCTCGTCTGGCTGACGCGTATGGCTCAGGAGAACTC
CGCCTCACAGTTGAGCAAAACATCATAATCCCCAACGTTGACAACTCAAA
ACTCGAAACCTTACTCAAAAAGCCTTTGTTAGAAAAGTTTTCACCACACC
CATCCTTTCTAATGAAAGGTCTAATTGCATGCCCAGGCAATTCATTTTTG
TGGACCAACAATCCTCCAAGACAAAGGCTAGGGCCCTAAAAGTGAACCGA
AGAAGGTGGAAAAGCTGGGTGGAAGTAAAAAACCCCGGGAAGGAAGCCCC
GGAACGGGGGTTCCAACCACCTGGGGCAAAGGTTCCAAGTCCCGGAAATT
TGTAAATTCTGGGGTGGCCAAAAAAAAAAAATGAAAAAAAGGGAAAAAAA
CTTAGGAAAAGAAACGAAAATTTTTTCCCGGGGAAGGGGAAAAAAATACG
CACATGAGACCTCCCATATTTTGGAGAAAAAAATAATATTTAAAAAAAAA
AAAGGGTGGTCTCCTCCTTTGTGAAAAAGAAGTGTGGTGTTGGGGGCCCC
CCCCCATAGTTTATTGTTATCCCACACACAAA
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