DY305936

Overview
NameDY305936
Unique NameDY305936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1295
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305936_ssr954 microsatellite DY305936_ssr954:954..965. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6784 contig Csv1_Contig6784:1..1295. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2M_ARATH (NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 3.992e-83
Identity = 171/240 (71.25%), Postives = 175/240 (72.92%), Query Frame = 3
Query:  192 HMFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWXXXXXXXXXXXXXXXXXXXXXXXHLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLVWLFHDLWVYWSY------PLPSITPDFERITNHWCSIYC*FYWGFSLFAVRSLFKITA 893
            HMFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPL SNVGW                       HLFWNN FRRDNFTYFCQI LLLSTAGTISMCFDFF+QERFDAFEFIVLILLSTC MLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGIL   LF    +Y S        L  I   +E IT    S     + G    AV  LFKITA
Sbjct:   11 HMFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLASNVGWLGLLSVLITLLLLAAGAPLLTIAHLFWNNLFRRDNFTYFCQIFLLLSTAGTISMCFDFFDQERFDAFEFIVLILLSTCGMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGIL---LFGCSMIYGSTGATHFDQLAKILTGYE-ITGARSS---GIFMGILFIAVGFLFKITA 243          

HSP 2 Score: 28.4906 bits (62), Expect = 3.992e-83
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  164 MKAEFVRILPHVQSFF 211
            MKAEFVRILPH+ + F
Sbjct:    1 MKAEFVRILPHMFNLF 16          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2M_OENBE (NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera bertiana GN=ND2 PE=2 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 2.301e-81
Identity = 173/239 (72.38%), Postives = 177/239 (74.06%), Query Frame = 3
Query:  195 MFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWXXXXXXXXXXXXXXXXXXXXXXXHLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLVWLFHDLWVYWSY------PLPSITPDFERITNHWCSIYC*FYWGFSLFAVRSLFKITA 893
            MFNLFLAVFPEIFIINATFILLIHGVVFSTSKK DYPPLVSNVGW                       HLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYV+AASKRKSEFSTEAGLKYLILGAFSSGIL   LF    +Y S        L  I   +E IT    S     + G    AV  LFKITA
Sbjct:    1 MFNLFLAVFPEIFIINATFILLIHGVVFSTSKKDDYPPLVSNVGWLGLLSVLITLLLLAAGAPLLTIAHLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVLAASKRKSEFSTEAGLKYLILGAFSSGIL---LFGCSMIYGSTGATHFDQLAKILTGYE-ITGARSS---GIFMGILFIAVGFLFKITA 232          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2M_MARPO (NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha GN=ND2 PE=3 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 6.960e-62
Identity = 140/233 (60.09%), Postives = 158/233 (67.81%), Query Frame = 3
Query:  207 FLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWXXXXXXXXXXXXXXXXXXXXXXXHLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLVWLFHDLWVYWSYPLPSITPDFERITNHWCSIY----C*FYWGFSLFAVRSLFKITA 893
            FLA+FPEIF+INAT ILLI+GVVFSTSKKYDYPPLV NVGW                       +L +NN    DNFTYFCQI LLLSTA T+ MC D+F+QE  +AFE IVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKR SEFSTEAGLKY ILGAFSSGIL   LF    +Y    + +     +  T +  +++       + G    AV  LFKITA
Sbjct:    6 FLALFPEIFLINATIILLIYGVVFSTSKKYDYPPLVRNVGWLGLLSVLITILLVAVGSPLAVA-NLVYNNLII-DNFTYFCQIFLLLSTASTMVMCLDYFKQESLNAFESIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRDSEFSTEAGLKYFILGAFSSGIL---LFGCSMIYGFTGVTNFEELAKIFTGYEITLFGAQSSGIFMGILFIAVGFLFKITA 233          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2M_CHOCR (NADH-ubiquinone oxidoreductase chain 2 OS=Chondrus crispus GN=ND2 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.599e-34
Identity = 90/229 (39.30%), Postives = 129/229 (56.33%), Query Frame = 3
Query:  216 VFPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWXXXXXXXXXXXXXXXXXXXXXXXHLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLVWLFHDLWVYWSYPLPS---ITPDFERITNHWCSIYC*FYWGFSLFAVRSLFKITA 893
            + PEIFI++   ILL++GV+FS+S K  YP L  N+G                           W++FF  D FT+  + L+ L   G I + F +   ER ++FE+ +LILL+  ++LF+I +YDL+ MYL+IE QSL FY++A+ KR SEFSTEAGLKY +LGAFSSG+L   LF    +Y    L +   +   F  +     S +     GF+L  V  LFK++A
Sbjct:   11 ILPEIFILSNVCILLVYGVLFSSSIKLGYPLLAQNLGLLSCQILGCSFIITYYQTFLNLSS---WSDFFINDIFTFKTKCLIFLMCLGWILITFSYINYERINSFEYWILILLAIVAILFIIQSYDLLTMYLSIEFQSLIFYILASFKRTSEFSTEAGLKYFVLGAFSSGLL---LFGSSLIYGLTGLTNFLDLAKFFTGMPMLELSSWIGLTTGFTLILVSLLFKLSA 233          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_RHIEC (NADH-quinone oxidoreductase subunit N OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nuoN PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.413e-24
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 3
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            L +   +  D F+ F +++ L+ +   + M      + + D FEF VL++L+T  +L MISA DLI++YLA+ELQSL  YV+AA  R S  STEAGLKY +LGA SSG+LL
Sbjct:   64 LAFGGVYMADGFSRFMKLVALIGSLVALFMTMGHARENQLDKFEFPVLLVLATLGILLMISANDLISLYLALELQSLALYVVAAINRDSLKSTEAGLKYFVLGALSSGMLL 174          

HSP 2 Score: 33.4982 bits (75), Expect = 9.413e-24
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQILNG*QITGARSI 834
            +G S++YG TG THF ++ Q L+   + GARS+
Sbjct:  175 YGMSLVYGFTGHTHFTEIAQALS---VEGARSL 204          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_RHOCS (NADH-quinone oxidoreductase subunit N OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=nuoN PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.704e-22
Identity = 52/105 (49.52%), Postives = 76/105 (72.38%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            F  D+F  F ++L+L +TA T+ +  ++ E+E+ D FE+ VL+LL+T  M+ M+SA DLI++Y+ +ELQSL  YVIAA +R    S+EAGLKY +LG+ SS ILL
Sbjct:   68 FIADDFAVFAKVLILTATALTVVLSVNYLEREQMDRFEYPVLMLLATVGMMLMVSANDLISLYVGLELQSLSLYVIAAFRRDYAKSSEAGLKYFLLGSLSSCILL 172          

HSP 2 Score: 25.409 bits (54), Expect = 1.704e-22
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQL 789
            +G S+IYG +G T+F +L
Sbjct:  173 YGASLIYGFSGTTNFERL 190          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_PARL1 (NADH-quinone oxidoreductase subunit N OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=nuoN PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.751e-22
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            +   F  D FT F ++L+LL+ A  I M   F  +E  D FE+ VLI+L+T  M  M+SA  LI++Y+ +ELQSL  YVIAA  R +  +TEAGLKY +LGA +SG+LL
Sbjct:   68 FGGMFVIDGFTKFMKLLILLAAAAAIVMSLTFIRREGMDRFEYPVLIILATLGMFMMVSANGLISLYMGLELQSLSLYVIAAFHRDNTRATEAGLKYFVLGALASGMLL 176          

HSP 2 Score: 25.0238 bits (53), Expect = 3.751e-22
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQIL 801
            +G S+IYG TG+  F  +  +L
Sbjct:  177 YGASLIYGFTGSVQFGSIATVL 198          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_BARBK (NADH-quinone oxidoreductase subunit N OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=nuoN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.146e-20
Identity = 46/110 (41.82%), Postives = 74/110 (67.27%), Query Frame = 3
Query:  405 FWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            F+ N    D F+ + +IL L+    ++ +   F   ++FD FEF +L+LL+T  M+ MIS+ +++++Y+ +ELQSL  YV+AA  R +  S+EAG+KY +LGA SSG+LL
Sbjct:   66 FYTNALIIDAFSRYMKILTLIGALFSLILSVGFSSSQKFDIFEFPILVLLATLGMMLMISSGNMLSLYMGLELQSLALYVLAAIHRDNVKSSEAGIKYFVLGALSSGLLL 175          

HSP 2 Score: 26.9498 bits (58), Expect = 1.146e-20
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQILNG 807
            +G S++YG TG   F ++   LNG
Sbjct:  176 YGISLLYGFTGQIGFREISSALNG 199          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_PARDP (NADH-quinone oxidoreductase subunit N OS=Paracoccus denitrificans (strain Pd 1222) GN=nuoN PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.734e-20
Identity = 46/109 (42.20%), Postives = 75/109 (68.81%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            ++  F  D F+ F +++ L++ AG ++M  D+ ++     FEF +++ L+   M+FM+SA DL+ +Y+ +ELQSL  YV+AA +R S  S+EAGLKY +LG+ SSG+LL
Sbjct:   64 FHGMFIDDGFSRFAKVVTLVAAAGVLAMSADYMQRRNMLRFEFPIIVALAVLGMMFMVSAGDLLTLYMGLELQSLALYVVAAMRRDSVRSSEAGLKYFVLGSLSSGLLL 172          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NQO14_PARDE (NADH-quinone oxidoreductase subunit 14 OS=Paracoccus denitrificans GN=nqo14 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.734e-20
Identity = 46/109 (42.20%), Postives = 75/109 (68.81%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            ++  F  D F+ F +++ L++ AG ++M  D+ ++     FEF +++ L+   M+FM+SA DL+ +Y+ +ELQSL  YV+AA +R S  S+EAGLKY +LG+ SSG+LL
Sbjct:   64 FHGMFIDDGFSRFAKVVTLVAAAGVLAMSADYMQRRNMLRFEFPIIVALAVLGMMFMVSAGDLLTLYMGLELQSLALYVVAAMRRDSVRSSEAGLKYFVLGSLSSGLLL 172          
The following BLAST results are available for this feature:
BLAST of DY305936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
NU2M_ARATH3.992e-8371.25NADH-ubiquinone oxidoreductase chain 2 OS=Arabidop... [more]
NU2M_OENBE2.301e-8172.38NADH-ubiquinone oxidoreductase chain 2 OS=Oenother... [more]
NU2M_MARPO6.960e-6260.09NADH-ubiquinone oxidoreductase chain 2 OS=Marchant... [more]
NU2M_CHOCR3.599e-3439.30NADH-ubiquinone oxidoreductase chain 2 OS=Chondrus... [more]
NUON_RHIEC9.413e-2446.85NADH-quinone oxidoreductase subunit N OS=Rhizobium... [more]
NUON_RHOCS1.704e-2249.52NADH-quinone oxidoreductase subunit N OS=Rhodospir... [more]
NUON_PARL13.751e-2248.62NADH-quinone oxidoreductase subunit N OS=Parvibacu... [more]
NUON_BARBK1.146e-2041.82NADH-quinone oxidoreductase subunit N OS=Bartonell... [more]
NUON_PARDP1.734e-2042.20NADH-quinone oxidoreductase subunit N OS=Paracoccu... [more]
NQO14_PARDE1.734e-2042.20NADH-quinone oxidoreductase subunit 14 OS=Paracocc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305936 ID=DY305936; Name=DY305936; organism=Citrus sinensis; type=EST; length=1295bp
GTCTACATTCAATTCTTTATTGAGCCTGGTGTGGAATCACCATCATTACA
CATTCATTGTTGATTTGGCTGCTGGTCTAGCGATCCTTCCTAGCCGCCGC
CTAGAGTGCAGCCTGCTTGCTGAAGACCGTAACGTAAGTAACTCAGTGCT
CCATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTC
AATCTTTTTTTAGCGGTTTTTCCAGAGATCTTTATCATTAATGCAACCTT
TATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATT
ATCCGCCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTA
ATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCA
TTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTTTGCC
AAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTTGAT
TTTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCT
ACTTTCTACTTGCAGTATGCTCTTTATGATCTCGGCTTATGATTTAATTG
CCATGTATTTAGCTATTGAGCTTCAAAGTTTATGTTTTTATGTAATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTTGAAATATTT
GATCTTAGGTGCATTTTCCTCTGGAATATTATTGGTTTGGTTGTTCCATG
ATCTATGGGTCTACTGGAGCTACCCACTTCCATCAATTACCCCAGATTTT
GAACGGATAACAAATCACTGGTGCTCGATCTATTGTTAATTTTATTGGGG
ATTCTCTTTATTCGCTGTAAGATCCCTATTCAAAATCACTGCCAATTCCC
TTTTCGGGCGGCTGTGAGGAAGAACGGCCCCTTATAAGTGGGGAAAGGGT
AAGGGGTGGGTGGGTACCACCCAAAATTAAAAAAAACCACACAAAATCTC
TTTGTGGGGGTCCGGGCCATCCCGGTCTCGCAGAATTAGGAATTATTTTG
TCAGTTCTATGTGATGAGTCATAATATACAAAGACGCGGGAATCAGCGTA
AAAAAAATCCATGGTTGTTGATGTCGTAATAGACNGACCATNGAAAGNGA
CAACAAGCTCTAATGTAGCAAGCTCGTCATTCAGACACAAGACTGAAGCA
TAAGAAACCACCTCAGACCATACGCATGTTGCGAGCGACGCTTCCAACCC
CAAANACGNGTCATAATGACGTGCGACGTTACGCATCCTCTGACT
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