DY305932

Overview
NameDY305932
Unique NameDY305932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1247
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11169 contig Csv1_Contig11169:1407..2654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 1.157e-82
Identity = 143/178 (80.34%), Postives = 161/178 (90.45%), Query Frame = 3
Query:    3 DGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFA 536
            DGLQPETKIINEQLGKIN  GFLTINSQP+VN  +SDS ++GWGGPGGYVYQKAYLEFFCS +KL  LV+KSKA P IT+MAVNK  NW +N  ++DVNAVTWGVFPAKE+IQPT+VDPASFKVWKDEAFEIWSRSWA+LYPE D SRKLLEEV++SYYLVSLVDN+YINGD+F+VFA
Sbjct:  415 DGLQPETKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGPGGYVYQKAYLEFFCSKDKLDTLVEKSKAFPSITYMAVNKSENWVSNTGESDVNAVTWGVFPAKEVIQPTIVDPASFKVWKDEAFEIWSRSWANLYPEDDPSRKLLEEVKNSYYLVSLVDNNYINGDIFSVFA 592          
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 8.293e-81
Identity = 144/180 (80.00%), Postives = 158/180 (87.78%), Query Frame = 3
Query:    3 DGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFADL 542
            DGLQPET+IINEQL K+N KGFLTINSQP+VN ERSDS +VGWGGP GYVYQKAYLEFFCS EKL A+V+K KALP IT+MAVNK   W +N  Q DVNAVTWGVFPAKEIIQPT+VDPASF VWKDEAFE WSRSWA+LYPE D SR LLEEV++SYYLVSLV+NDYINGD+F VFADL
Sbjct:  415 DGLQPETRIINEQLIKVNSKGFLTINSQPSVNAERSDSPTVGWGGPVGYVYQKAYLEFFCSKEKLDAVVEKCKALPSITYMAVNKGEQWVSNTAQADVNAVTWGVFPAKEIIQPTIVDPASFNVWKDEAFETWSRSWANLYPEADPSRNLLEEVKNSYYLVSLVENDYINGDIFAVFADL 594          
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 2.497e-77
Identity = 136/180 (75.56%), Postives = 157/180 (87.22%), Query Frame = 3
Query:    3 DGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFADL 542
            DGLQPETKII++QL KIN KGFLTINSQPAVNGERSDS+SVGWGGPGGYVYQKAYLEFFCS EKL  L++KSKA P +T++AVNK+G   +N+    VNAVTWGVFP KEI+QPTVVD ASF VWKDEAFEIWS+ WA L+PEGDSSR++L++VQ SY+LVSLVDNDYINGDLF  F ++
Sbjct:  415 DGLQPETKIIDDQLVKINQKGFLTINSQPAVNGERSDSTSVGWGGPGGYVYQKAYLEFFCSKEKLDQLIEKSKAFPSLTYIAVNKDGESFSNIPTNAVNAVTWGVFPGKEIVQPTVVDSASFMVWKDEAFEIWSKGWACLFPEGDSSREILDKVQKSYFLVSLVDNDYINGDLFAAFKEI 594          
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 4.408e-74
Identity = 130/177 (73.45%), Postives = 151/177 (85.31%), Query Frame = 3
Query:    3 DGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVF 533
            DGLQPETKII++QL  IN KGFLTINSQPAVNGE+SDS +VGWGGPGGYVYQKAYLEFFC+ EKL  L++K KA P +T++AVNK+G   +N++   VNAVTWGVFP KEIIQPTVVD ASF VWKDEAFEIW+R W  ++PEGDSSR+LLE+VQ +YYLVSLVDNDY+ GDLF  F
Sbjct:  415 DGLQPETKIIDDQLVNINQKGFLTINSQPAVNGEKSDSPTVGWGGPGGYVYQKAYLEFFCAKEKLDQLIEKIKAFPSLTYIAVNKDGETFSNISPNAVNAVTWGVFPGKEIIQPTVVDHASFMVWKDEAFEIWTRGWGCMFPEGDSSRELLEKVQKTYYLVSLVDNDYVQGDLFAAF 591          
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 4.449e-42
Identity = 83/167 (49.70%), Postives = 108/167 (64.67%), Query Frame = 3
Query:    9 LQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 506
            L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K     + +  VN +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDND+
Sbjct:  460 LAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDF 626          
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 4.449e-42
Identity = 83/167 (49.70%), Postives = 108/167 (64.67%), Query Frame = 3
Query:    9 LQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 506
            L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K     + +  VN +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDND+
Sbjct:  460 LAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDF 626          
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.208e-41
Identity = 81/167 (48.50%), Postives = 109/167 (65.27%), Query Frame = 3
Query:    9 LQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 506
            L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E + AL+   K     + +  V+ +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDN++
Sbjct:  459 LAAETSLMKEELLRVNRRGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLKKYELRVNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNYFLVNLVDNEF 625          
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR_CAEEL (Probable methylenetetrahydrofolate reductase OS=Caenorhabditis elegans GN=C06A8.1 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 2.441e-40
Identity = 82/171 (47.95%), Postives = 111/171 (64.91%), Query Frame = 3
Query:    6 GLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPE---KLTALVDKSKALPFITFMAVNKEGNW-KANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 506
            G+QPET +I+EQL   N  G LT+NSQP+VNG  S    VGWG PGGY YQKAYLE F + E   KL  ++++   +  + + A+NK+  + K N  +T   AVTWGVFP  EI QPTVVDP SF+ W+DEA+++W   W   YP+   S  +++ V   + LV+LVDND+
Sbjct:  475 GVQPETSLISEQLVWCNENGILTVNSQPSVNGAPSTDPLVGWGKPGGYCYQKAYLECFMTAELSDKLIQIIEREFPVR-VNYHAINKDSTFDKTNSEETTPIAVTWGVFPGSEIAQPTVVDPLSFRAWRDEAYQMWMAQWGDFYPKESKSYGVIKAVHDEFRLVTLVDNDF 644          
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.188e-40
Identity = 80/167 (47.90%), Postives = 107/167 (64.07%), Query Frame = 3
Query:    9 LQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 506
            L  ET ++ E+L ++N  G LTINSQP +N + S    VGWG  GGYV+QKAYLEFF S E + AL+   K     + +  V+ +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDN++
Sbjct:  459 LAAETSLMKEELLRVNRLGILTINSQPNINAKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLKTYELRVNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNYFLVNLVDNEF 625          
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.026e-38
Identity = 82/176 (46.59%), Postives = 106/176 (60.23%), Query Frame = 3
Query:    9 LQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYING-DLFTVF 533
            +  E  +I +QL  +N   FLTINSQPA+NGE+S     GWG P GYV+QK Y+EFF  P  L  L +  K L  +++   NK G+   N      NAVTWGVFP +EIIQPT+V+  SF  WKDEA+ +    WA+ Y     SRKLL  +   ++L  +VDND+ NG  LF VF
Sbjct:  410 ISDEADLIRDQLLSMNRNAFLTINSQPALNGEKSSHPVFGWGPPNGYVFQKPYVEFFVHPSLLNELKETVKKLNSVSYFVTNKNGDLDTNSQYEIPNAVTWGVFPNREIIQPTIVESTSFLAWKDEAYSL-GMEWANAYSPDSISRKLLVSMMKEWFLCVIVDNDFQNGQSLFDVF 584          
The following BLAST results are available for this feature:
BLAST of DY305932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTHR1_ARATH1.157e-8280.34Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR2_ARATH8.293e-8180.00Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR_ORYSJ2.497e-7775.56Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR1_MAIZE4.408e-7473.45Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR_MACFA4.449e-4249.70Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR_HUMAN4.449e-4249.70Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_BOVIN2.208e-4148.50Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR_CAEEL2.441e-4047.95Probable methylenetetrahydrofolate reductase OS=Ca... [more]
MTHR_MOUSE3.188e-4047.90Methylenetetrahydrofolate reductase OS=Mus musculu... [more]
MTHR1_SCHPO1.026e-3846.59Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305932 ID=DY305932; Name=DY305932; organism=Citrus sinensis; type=EST; length=1247bp
GAGACGGGCTTCAGCCAGAGACCAAAATCATAAATGAACAGCTTGGAAAG
ATCAATGTGAAAGGTTTCCTCACTATCAACAGCCAGCCGGCAGTCAATGG
TGAAAGATCCGATTCATCTTCTGTTGGTTGGGGTGGGCCAGGAGGATATG
TTTATCAGAAAGCATATCTAGAGTTTTTCTGCTCACCAGAGAAGTTGACT
GCACTTGTTGACAAAAGCAAAGCTCTTCCATTCATAACCTTCATGGCTGT
CAACAAAGAAGGGAACTGGAAAGCCAATGTTAATCAAACTGATGTGAATG
CCGTAACTTGGGGGGTCTTCCCAGCCAAGGAGATTATCCAACCGACTGTT
GTTGACCCTGCCAGCTTCAAGGTGTGGAAGGATGAGGCATTCGAAATTTG
GTCAAGATCATGGGCTTCATTGTACCCCGAGGGAGACTCATCAAGAAAAT
TGCTCGAAGAGGTGCAGAGCAGCTATTATTTGGTCAGCTTGGTGGATAAT
GATTACATCAATGGGGATCTTTTTACTGTTTTTGCCGATCTCTAGGTTAA
GCTGCTGTACTCCATGGAATTACAACCTGATTTCATCAATGGTCATCTTG
TACCCTCACTGAAGCCATTTGAAGTGTTGCCTTCTCTCAAGTTAATTTCA
ATTGAAATTTATCCAAAATTACAAGCTTACTGATTGTATTAATAAGATGA
TAGGGATTTTGATACCTCCCTGATGCTCCATGCAAATTAAATTGGCAGCT
TTCATTCTATTGAATCGCTCCTAATTATTTTGTCATGGAAATTGCAATCT
GAAAATTGTAACGTTACCCAAAAATATTTATTCCAATAAAGTGAGTCTTT
TTTTTTCTGCCAAAAAAAAAAAAAAAAAAACTCCCCTCCGGCCCAAATTC
GGCACGAGGGGAAAATTGTCCCAAAATCATTTTCTAAACCCAAAAGTTAT
TGCCTAAACTAAAAAACTTTTTCCCCCCGAACCCCTTTGCAATTTAATAT
AATTCCGTTTCAATCTTTGCAAAAAATAAAAAATTGTTTCAAAGAAGTAA
AAAAAAAACCTAATCCCCCCCCCGAAGTGGGTTTTAATCTCTTGGGACCC
TTTCCCCTTTCCCCAAATTGGGTTGTTTTACCCGAAAAACAAATTTTTTG
TTTTCTCTCCCTGGGAGTGGTGGGGGGGGCCCCCCATTTTTTTGTTTGCC
GCCAAGAAGGGGGGGGGGCCCCGAAAAAAATTTTTTCTTTGGCGCTC
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