DY305930

Overview
NameDY305930
Unique NameDY305930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4376 contig Csv1_Contig4376:371..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.332e-51
Identity = 103/126 (81.75%), Postives = 105/126 (83.33%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGANPS               KVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKL EE+QE FKKNIEGATKFLLSKLSDLQFFVGESMHDDG LVFAYY+ GATDPTFLY A ALKEVKC
Sbjct:   43 VDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.683e-50
Identity = 98/126 (77.78%), Postives = 105/126 (83.33%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGANPS               KVVDIVDTFRLQEQPAFDKKQFVT+MKR+IK LTPKL  E+QE+FKK+IEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK+GATDPTFLY A  LKE+KC
Sbjct:   43 VDIGANPSAEGGEEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.235e-47
Identity = 92/126 (73.02%), Postives = 100/126 (79.37%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGANPS               KVVDIVDTFRLQEQP  DKKQF+ Y+K+FIKLLTPKL  E+QE FKKNIEGATKFLL KL D +FFVGESMHDD C+VFAYY+EGATDPTFLY+A ALKEVKC
Sbjct:   43 VDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.978e-47
Identity = 94/126 (74.60%), Postives = 101/126 (80.16%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGANPS               KVVDIVDTFRLQEQPAFDKKQFVT+MKRFIK LTPKL  E+QE+FKK+IEGATK+LLSK+ D QFFVGESM DD CLVFAYYK+GA DPTFLY A ALKEVKC
Sbjct:   43 VDIGANPSAEGGGEDEGVDDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.601e-45
Identity = 91/126 (72.22%), Postives = 98/126 (77.78%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            V+IGANPS               +VVDIVDTFRLQEQPAFDKKQFVT+MKR+IK LTPKL  E QE FKKNIE ATKFLL K+ DLQFFVGESMHDDG LVFAYYKEG+ DP FLYIA  LKE+KC
Sbjct:   43 VNIGANPSAEGGCEDEGVDDQAVRVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.601e-45
Identity = 92/126 (73.02%), Postives = 99/126 (78.57%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGANPS               KVVDIVDTFRLQEQP FDKKQFVT+MKR+IK L+ KL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GATDPTFLY +  LKEVKC
Sbjct:   43 VDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 4.660e-45
Identity = 90/126 (71.43%), Postives = 97/126 (76.98%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            V+IGANPS               KVVDIVDTFRLQEQPAFDKKQFVTY+KR+IK LTPKL  E QE FKKNIE ATKFLLSKL D QFFVGE MHDD  LVFAYYK+G+ DPTFLY+A  LKE+KC
Sbjct:   43 VNIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_TOBAC (Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.356e-44
Identity = 89/126 (70.63%), Postives = 101/126 (80.16%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            V+IGANPS               KVVDIVDTFRLQEQP+FDKKQFV YMK++IK LTPKL  E++E+FK NI+GATK+LLSKLSDLQFFVGESM DD  +VFAYYK+GATDPTFLY+A  LKEVKC
Sbjct:   43 VNIGANPSAEGADEDEGVDDQAIKVVDIVDTFRLQEQPSFDKKQFVAYMKKYIKNLTPKLGAEQEEVFKNNIQGATKYLLSKLSDLQFFVGESMADDTGMVFAYYKDGATDPTFLYLAHGLKEVKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.152e-44
Identity = 91/126 (72.22%), Postives = 99/126 (78.57%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGANPS               KVVDIVDTFRLQEQP FDKKQF+ ++KR+IK L  KLSEERQ  FKKN+EGA K L+SKLSDLQFFVGESMHDDG +VFAYYK+GATDPTFLY AD LKEVKC
Sbjct:   43 VDIGANPSAEGGDEEGVKIRLV-KVVDIVDTFRLQEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.728e-44
Identity = 90/126 (71.43%), Postives = 100/126 (79.37%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGAN S               KVVDIVD FRLQEQPAFDKKQF+ ++KR+IKLLTPKL  E+QE+FKK+IEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY A ALKE+KC
Sbjct:   43 VDIGANASAEGGEDEGVDDTAV-KVVDIVDVFRLQEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLCKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC 167          
The following BLAST results are available for this feature:
BLAST of DY305930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TCTP_HEVBR3.332e-5181.75Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV3.683e-5077.78Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA2.235e-4773.02Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN4.978e-4774.60Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC1.601e-4572.22Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ1.601e-4573.02Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU4.660e-4571.43Translationally-controlled tumor protein homolog O... [more]
TCTP_TOBAC1.356e-4470.63Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ5.152e-4472.22Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA6.728e-4471.43Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305930 ID=DY305930; Name=DY305930; organism=Citrus sinensis; type=EST; length=578bp
GGTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGATGAGGATGAGG
GTGTTGATGACCAAGCCGTGAAGGTGGTCGACATTGTCGACACATTCAGG
CTGCAGGAGCAACCTGCTTTTGACAAGAAGCAGTTTGTAACATACATGAA
GAGATTCATCAAGTTGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGA
TATTTAAGAAGAATATTGAGGGAGCGACCAAGTTCTTGCTCTCGAAGCTC
AGTGACCTTCAATTCTTTGTTGGGGAGAGCATGCATGATGATGGCTGTCT
TGTCTTTGCTTACTACAAGGAAGGTGCGACCGACCCAACATTTTTGTATA
TTGCTGATGCATTGAAGGAGGTGAAGTGCTAAGCCGGGCTTCGAAGAGGA
AGTGCCTGCTGTAGTTCTAGTTTTAATTATTGCCCGCGGTTATTTTTATG
TATCTTTTGTACTGGTTTACTCGGGACTTGTGCTTGCTGTTTTTTAGTTT
TTATTTTGACATAAACAATATGTTTTTCTGCTCCTAATTATTGGGTTTTA
TGGTTTGAGATTGAATTACCAAATAACT
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