DY305927

Overview
NameDY305927
Unique NameDY305927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1250
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2431 contig Csv1_Contig2431:247..1496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: BT1_MAIZE (Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.243e-36
Identity = 82/232 (35.34%), Postives = 143/232 (61.64%), Query Frame = 3
Query:    3 TKAVLAPLETIRTRMVVG-VGSKNISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKR---SLNRPEMLALGALAGFTASTISFPLEVARKRLMVGPLQGK 686
            ++  +APLETIRT ++VG +G  +++G F  +++ +GW GL+ GN +N+LR+ P++AIE  T++  K+ +T        +E PK+ I    ++ +L+  +            STL  +P+E++K R+T+  DVY +++ A  KI ++ G    Y G++P+LIG++PY+ C ++ YETLK+ Y  +  +R    +     L +G+ AG  AS+ +FPLEVARK++ VG + G+
Sbjct:  148 SRTFVAPLETIRTHLMVGSIGVDSMAGVFQWIMQNEGWTGLFRGNAVNVLRVAPSKAIEHFTYDTAKKFLTP-----KGDEPPKIPIPTPLVAGALAGFA------------STLCTYPMELIKTRVTIEKDVYDNVAHAFVKILRDEGPSELYRGLTPSLIGVVPYAACNFYAYETLKRLYRRATGRRPGADVGPVATLLIGSAAGAIASSATFPLEVARKQMQVGAVGGR 362          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.825e-19
Identity = 68/219 (31.05%), Postives = 111/219 (50.68%), Query Frame = 3
Query:   18 APLETIRTRMVV-GVGSKNISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEM--LALGALAGFTASTISFPLEVARKRL 662
            APL+ ++  M V G  S NI G F +++++ G + LW GNG N+++I P  A++   +E  K+ +T   +K    E  +   G ++ + + ++I                  +P+EVLK RL V+    Y  +     KI K  G GAFY G  P L+G++PY+     +YE LK  + ++  K S+N   M  L+ GAL+       S+PL + R R+
Sbjct:  213 APLDRLKVMMQVHGSKSMNIFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFE--RFISGSMAGATAQTFI------------------YPMEVLKTRLAVAKTGQYSGIYGCAKKILKHEGFGAFYKGYIPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLSCGALSSTCGQLASYPLALVRTRM 411          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.113e-19
Identity = 71/232 (30.60%), Postives = 115/232 (49.57%), Query Frame = 3
Query:   18 APLETIRTRMVVGVGSK----NISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHD-VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLAL--GALAGFTASTISFPLEVARKRLMVGPLQGKCP 692
            APL+ ++  M V  GSK    NI G F +++++ G + LW GNG N+++I P  A++   +E  K+ +T   +K    E  +   G ++ + + ++I                  +P+EVLK RL V     Y  +     KI K  G+GAFY G  P L+G++PY+     +YE LK  + ++  K S+N   M+ L  GAL+       S+PL + R R+    +  K P
Sbjct:  213 APLDRLKVMMQVH-GSKSAKMNIYGGFQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFE--RFVSGSMAGATAQTFI------------------YPMEVLKTRLAVGKTGQYSGMFDCAKKILKYEGMGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMIEKSP 423          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.066e-19
Identity = 70/220 (31.82%), Postives = 110/220 (50.00%), Query Frame = 3
Query:   18 APLETIRTRMVV-GVGSKNISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLAL---GALAGFTASTISFPLEVARKRL 662
            APL+ ++  M V G  S NI G F ++I++ G + LW GNG N+++I P  A++   +E  K+ +T        EE  K+      +S S++  +            +    +P+EV+K RL V     Y  +     KI K  G GAFY G  P L+G++PY+     +YE LK  + ++  K S+N P +L L   GAL+       S+PL + R R+
Sbjct:  213 APLDRLKVMMQVHGSKSMNIFGGFRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLT--------EEGQKIGTFERFISGSMAGAT------------AQTFIYPMEVMKTRLAVGKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVN-PGVLVLLGCGALSSTCGQLASYPLALVRTRM 411          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.183e-18
Identity = 69/222 (31.08%), Postives = 111/222 (50.00%), Query Frame = 3
Query:   18 APLETIRTRMVVGVGSK----NISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHD-VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLAL--GALAGFTASTISFPLEVARKRL 662
            APL+ ++  M V  GSK    NI G F +++++ G + LW GNG N+++I P  A++   +E  K+ +T        EE  K+      +S S++  +            +    +P+EV+K RL V     Y  +     KI K  G+GAFY G  P L+G++PY+     +YE LK  + ++  K S+N   M+ L  GAL+       S+PL + R R+
Sbjct:  213 APLDRLKIMMQVH-GSKSDKMNIFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLT--------EEGQKIGTFERFISGSMAGAT------------AQTFIYPMEVMKTRLAVGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRM 413          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCM2B_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-B OS=Danio rerio GN=slc25a25b PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.442e-18
Identity = 68/236 (28.81%), Postives = 112/236 (47.46%), Query Frame = 3
Query:    3 TKAVLAPLETIRTRMVVGVGSKN---ISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRP--EMLALGALAGFTASTISFPLEVARKRLMVGPLQGKCP 692
            ++   APL+ ++  M V     N   I+G F ++I + G + LW GNGIN+L+I P  AI+   +E +KR + + QE     E  ++  G L+ + + S I                  +P+EVLK RL +     Y  ++     I+K+ G+ AFY G  P ++G++PY+     +YETLK  +       S +     +LA G ++       S+PL + R R+     Q   P
Sbjct:  200 SRTCTAPLDRLKVLMQVHATRSNSMGIAGGFTQMIREGGLRSLWRGNGINVLKIAPESAIKFMAYEQIKRLIGSNQETLGILE--RLVSGSLAGAIAQSSI------------------YPMEVLKTRLALGRTGQYSGIADCAKHIFKKEGMTAFYKGYIPNMLGIIPYAGIDLAVYETLKNSWLQRFATDSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQASQEGSP 415          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: S2542_XENLA (Solute carrier family 25 member 42 OS=Xenopus laevis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.871e-18
Identity = 61/234 (26.07%), Postives = 110/234 (47.01%), Query Frame = 3
Query:    6 KAVLAPLETIRTRMVVGVGSKNISGN-----FIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTT--AQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMVGPLQG 683
            K  +APL+  RT+++  V S   S               G+  LW GN   M+R+IP  AI+    E  K+ + +    +  +    P++  G L+                     +TL  +PL++++ R+ V+  ++Y ++     ++ +E G+ + Y G +PT++G++PY+   +F YETLKK +     +      E L  GA AG    + S+PL+V R+R+    + G
Sbjct:   51 KTAVAPLD--RTKIIFQVSSNRFSAKEAYRLIYRTYMNDGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALA------------------GTTATLLTYPLDLVRARMAVTQKEMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETLKKLHAEHSGRTQPYTFERLLFGACAGLFGQSSSYPLDVVRRRMQTAGVTG 264          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: S2542_XENTR (Solute carrier family 25 member 42 OS=Xenopus tropicalis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.001e-17
Identity = 60/234 (25.64%), Postives = 111/234 (47.44%), Query Frame = 3
Query:    6 KAVLAPLETIRTRMVVGVGSKNISGN-----FIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTT--AQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS-HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMVGPLQG 683
            K  +APL+  RT+++  V S   S              +G+  LW GN   M+R+IP  AI+    E  K+ + +    +  +    P++  G L+                     +T+  +PL++++ R+ V+  ++Y ++     ++ +E G+ + Y G +PT++G++PY+   +F YETLKK +     +      E L  GA AG    + S+PL+V R+R+    + G
Sbjct:   51 KTAVAPLD--RTKIIFQVSSNRFSAKEAYRLIYRTYLNEGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALA------------------GTTATIITYPLDLVRARMAVTPKEMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETLKKLHAEHSGRTQPYPFERLLFGACAGLFGQSASYPLDVVRRRMQTAGVTG 264          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: S2542_DANRE (Solute carrier family 25 member 42 OS=Danio rerio GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.914e-17
Identity = 63/232 (27.16%), Postives = 110/232 (47.41%), Query Frame = 3
Query:    6 KAVLAPLETIRTRMVVGVGSKNISGN-----FIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS-HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMVGPLQG 683
            K  +APL+  RT+++  V S   S             + G+  LW GN   M+R+IP  AI+    E  K  +      +  +  P V   P  L+ SL+  +            + +  +PL++++ R+ V+  ++Y ++     +I +E G+   Y G +PT++G++PY+   +F YETLKK +     +      E L  GA AG    + S+PL+V R+R+    + G
Sbjct:   50 KTAVAPLD--RTKIIFQVSSNRFSAKEAYRLIYRTYLKDGFFSLWRGNSATMVRVIPYAAIQFCAHEQYK-GILGKYYGFQGKALPPV---PRLLAGSLAGTT------------AAIITYPLDMVRARMAVTPKEMYSNIMDVFVRISREEGLKTLYRGFTPTILGVVPYAGLSFFTYETLKKTHAEKTGRAHPFPYERLVFGACAGLIGQSASYPLDVVRRRMQTAGVTG 263          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCMC3_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.805e-17
Identity = 68/222 (30.63%), Postives = 106/222 (47.75%), Query Frame = 3
Query:   18 APLETIRTRMVVGVGSKN---ISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLAL---GALAGFTASTISFPLEVARKRL 662
            APL+ ++  M V     N   I G    +I++ G   LW GNGIN+L+I P  AI+   +E +KRA+   QE    +E  +   G L+ + + + I                  +P+EVLK RLT+     Y  L     +I +  G  AFY G  P ++G++PY+     +YETLK ++    +  S N P +L L   G ++       S+PL + R R+
Sbjct:  203 APLDRLKVFMQVHASKSNRLNILGGLRNMIQEGGVLSLWRGNGINVLKIAPESAIKFMAYEQIKRAIRGQQETLHVQE--RFVAGSLAGATAQTII------------------YPMEVLKTRLTLRRTGQYKGLLDCAKRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNRWLQQYSHESAN-PGILVLLGCGTISSTCGQIASYPLALVRTRM 403          
The following BLAST results are available for this feature:
BLAST of DY305927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
BT1_MAIZE6.243e-3635.34Protein brittle-1, chloroplastic/amyloplastic OS=Z... [more]
SCMC1_MOUSE1.825e-1931.05Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_BOVIN3.113e-1930.60Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT4.066e-1931.82Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_HUMAN1.183e-1831.08Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2B_DANRE3.442e-1828.81Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENLA5.871e-1826.07Solute carrier family 25 member 42 OS=Xenopus laev... [more]
S2542_XENTR1.001e-1725.64Solute carrier family 25 member 42 OS=Xenopus trop... [more]
S2542_DANRE2.914e-1727.16Solute carrier family 25 member 42 OS=Danio rerio ... [more]
SCMC3_MOUSE3.805e-1730.63Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DF08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305927 ID=DY305927; Name=DY305927; organism=Citrus sinensis; type=EST; length=1250bp
GGACTAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGGACGAGAATGGTG
GTTGGTGTTGGATCCAAAAATATTTCTGGTAATTTCATTGAAGTAATTGA
GCAGCAGGGTTGGCAAGGACTATGGGCTGGCAATGGAATTAATATGCTCC
GAATAATCCCCACCCAGGCAATTGAGCTTGGAACATTTGAGTGTGTCAAA
CGAGCTATGACTACGGCACAAGAGAAATGGAGTCAGGAGGAATGCCCAAA
AGTGCAAATTGGTCCTCTCAGTTTGAGTTTTTCTCTCTCCTGGATTTCTC
CTGTTGCCGTGGCTGGTGCAGCTGCTGGAGTTGTTAGCACGCTTGCGTGC
CATCCTCTTGAAGTATTGAAGGATCGGTTGACTGTAAGTCATGATGTGTA
CCCTAGTTTGAGCATTGCAATTAGCAAAATATATAAGGAGGGTGGAATTG
GTGCTTTTTATGCCGGTATTTCACCTACGTTGATTGGCATGCTCCCGTAT
AGTACTTGTTACTACTTTATGTATGAGACATTGAAAAAGAAATACTGCAA
TTCAAAGAATAAGAGGTCGCTAAACCGTCCGGAGATGCTTGCATTGGGAG
CTCTTGCAGGTTTTACAGCTAGCACCATCAGCTTTCCCTTGGAGGTTGCT
AGGAAACGGCTTATGGTAGGACCTTTGCAGGGTAAATGTCCACCCCACAT
GGCAGCGGCACTTGCTGAAATCATTCTGGAAGAGGGTTTGATGGGCCTTT
ACCAGAATTGGGTGCAAGCTGTTTAAGGGTCATCCTTTCCTCAGAAAATC
CTGGAATGTTTACAAACCTTGAAAGAAATTACTGCCTCCCCTAAACCCTC
GTCCTATTTAAAACAAAAATTAGGTAATTTTCCTAATACCTATTGGGCAA
GTTTCTTGTATAAAGCCCCGCCTTTTACCATATAAAAAATGTGTTTCTTG
TATTAAAATTGAGGCAAGATTTTATTATTAGGTATTTTGTGTGCGCCCCG
ATTTTTTGTCTCCCGCCGTGCCTCTGGCGTGAGGTAGAATTTTCGTTATG
TTTCCGTATTTGATAGTAGCACTAATATAAGATGTGCCGGTGCTGCCAGG
GATGTTCCTCTCTCTATAGGTTCCGAAATAAGGAGAGTAAAAACTAGATA
GANCACAAAGGATACAACGTGTATTTAGAAAGTTGAAGTTGATGTGAATA
TTAGAATGCGTCTTGTTGGTTAATGTANATGGAATATATATTNTGAATAT
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