DY305924

Overview
NameDY305924
Unique NameDY305924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1265
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1065 contig Csv1_Contig1065:60..1326. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305924 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 3.245e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:  139 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 429
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97
[Close]
BLAST of DY305924 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.218e-22
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:  139 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 426
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104
[Close]
BLAST of DY305924 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.739e-20
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:  139 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 426
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104
The following BLAST results are available for this feature:
BLAST of DY305924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI3.245e-48100.00Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI5.218e-2255.77Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI3.739e-2052.88Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2DF05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305924 ID=DY305924; Name=DY305924; organism=Citrus sinensis; type=EST; length=1265bp
GCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAGCTACTGCAGGAGCA
GAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAACATCCCAGCTAGCT
ATCTTCATATCTATTAAGTTCTATAAGTAAATAAAACAATGGCCCGCTCT
CTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGATGGCATCTCGCT
CTCCATTAGCAGGAGAGGATATGCTGCAGCAGCACCCTTGGGGACCATAT
CTCGGACTGGTATCATGGAGAAAAATGATTTGAGGCCTGCGGTGAGAGAG
GATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACTGGGTACTA
CAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCAGAGCTTCGAGAGA
TGCTGTTGAACCACAAAGTCAGGGCACACTANGGAGTGGTGGCGCATAGC
AGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTTAAGTGATGTTGTT
ACGGTAGCAATTTTGACTCACTCTTATGTCTTTGCTGTTGTATTGATATC
AACTGTTAATGATAACTTTTATTAGTGCATTTCCATGAATTTGTCTATCT
GCTTTGCAGTACATTTAAGAAATTACCGATTTGGCTACTTTGCGTTAATA
TCCTATAGAGGTGTGAAGGCGTCTGGTTTGCCTAGATGGGAATTTTAGTC
GTTATGAGAAAGCGAGTTTGTTTTAGCCTTGGGTAGCCGATCTGCATTGC
CCCTTTGGGGGTGCCGAAGGGCAGGGGGCGGGGTGTAGGCGGATGGACAA
GTTAGATAATATGGCAGTAGATGAAATAATGAGACGTGAGTGGAGGGGGA
TGTGTTACGCTACAGGAAAGAGATTAGCGGAGACCCCGATAGAGCCAGCG
CCAGGGCGGTGTGAGGGGTGAGGTGGGGAACGGCGGGCGACAGCAGGTGT
GAAGGGGAGTGAGGCTGTGTTTGAAGTGTTGCGGGGGGGACGACTACGAG
TGGAGGGGGAGGACGCCAAAGGTAATAGGAGACCCGCGAAGCGCCGCGAG
AAGCCATGCAATACGGGTAAGCGACAGGAGTAAGGTTTGCCCGATTGGAC
ACAATTCCCATGTACAGGACTCTGTAAGGAACGTATCGAGCTGGTCCGCG
ATGATTGTGAGAANCGGGGCGATCAGCATTGTAGTGATGGTGAATGCCCC
AAGAGAATCTCATCATTTACTAGGTNACCCATCATCAAACATACTCCATG
ATAGACCACCTATAG
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