DY305923

Overview
NameDY305923
Unique NameDY305923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1275
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 3.348e-101
Identity = 192/261 (73.56%), Postives = 206/261 (78.93%), Query Frame = 1
Query:   58 MKLDTSGLESTSPF--FGSGDELCPELSAAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEKPSGM*CLRTSYNYYQPPP 834
            MKLDTSGLE+T P   FGS  E+    S+APSF LP +TDFD FQK     +K AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR+ISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLKG RFSVGSGSPYAYGVLDSGYKFDMS            Y ATF++  SGG  +    G +G  K SG       Y+YY   P
Sbjct:    1 MKLDTSGLETTMPVIGFGSNSEMLDGFSSAPSFDLPRTTDFDGFQKKAVEMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQGWTKLSGDDVGELHYHYYPVAP 261          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 9.742e-101
Identity = 189/261 (72.41%), Postives = 206/261 (78.93%), Query Frame = 1
Query:   58 MKLDTSGLESTSPF--FGSGDELCPELSAAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEKPSGM*CLRTSYNYYQPPP 834
            MKLDTSG E++ P   FGS  ++  ELS+ PSF LP + +FD FQK  K  LKHAKGTTTLAFIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR+ISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLKG RFSVGSGSPYAYGVLDSGYK+DMS            Y ATF++  SGG  +    G +G  K SG       Y+YY   P
Sbjct:    1 MKLDTSGFETSMPMIGFGSSSDMLDELSSVPSFDLPRTKEFDGFQKKAKDMLKHAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPEGWTKLSGDDVGELHYHYYPVAP 261          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 2.653e-98
Identity = 185/259 (71.43%), Postives = 201/259 (77.61%), Query Frame = 1
Query:   58 MKLDTSGLESTSPFFGSGDELCPELSAAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEKPSGM*CLRTSYNYYQPPP 834
            MKLDTSGLEST+P F   D +   L   PSF LP  TDFD FQK+    +K AKGTTTLAFIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR+ISVTGASKLLANILY+YRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG RFSVGSGSPYAYGVLD+GYK+DM+            Y AT+++  SGG  +    G  G +K +G       + YY   P
Sbjct:    1 MKLDTSGLESTAPIFRRSDFVFDGLQMTPSFDLPNPTDFDGFQKEAVQMVKPAKGTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMRFSVGSGSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVVSVYHVGPDGWKKVTGDDVGDLHFQYYPVVP 259          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5_MOUSE (Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 1.375e-62
Identity = 120/204 (58.82%), Postives = 148/204 (72.55%), Query Frame = 1
Query:  136 AAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCN 747
            AAPS+ +P         ++ +  + H  GTTTLAF F  GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK +ISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YAYGV+D GY +D+             Y AT+++A SGG  N
Sbjct:   42 AAPSWGVP---------EEPRIEMLH--GTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVN 234          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 239.58 bits (610), Expect = 3.064e-62
Identity = 119/204 (58.33%), Postives = 149/204 (73.04%), Query Frame = 1
Query:  136 AAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCN 747
            AAPS+ +P         ++ +  + H  GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK +ISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YA+GV+D GY +D+             Y AT+++A SGG  N
Sbjct:   42 AAPSWGVP---------EEPRIEMLH--GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVN 234          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5_BOVIN (Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 4.001e-62
Identity = 122/216 (56.48%), Postives = 152/216 (70.37%), Query Frame = 1
Query:   97 FFGSGD--ELCPELSAAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGG 738
            FFG G   +L      +PS  L L+       ++ +  + H  GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK +ISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+             Y AT+++A SGG
Sbjct:   18 FFGLGGRADLLDLGPGSPSDGLSLAAPSWGVPEEPRIEILH--GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGG 231          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5_DICDI (Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 5.226e-62
Identity = 122/237 (51.48%), Postives = 158/237 (66.67%), Query Frame = 1
Query:  142 PSFALPLSTDFDEFQKDT------KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCNRLLCGTKGMEKPSGM*CLRTSYNYYQPPP 834
            P F LP + +  +F ++T         L+ A GTTTLAF++  G++V+ DS+++ G Y++S+SVKK+IEI P +LGTMAGGAADC FW R LG +CRL+EL NK  ISV  ASK+LANI+YSY+G GLS+GTMI GWD+TGP LYYVD++G RL G RFS GSGS YAYGVLD+G+K+DM+            Y AT ++A SGG  N       G +K S   C +    YY   P
Sbjct:   30 PHFELPPNANPGDFLRETFDHPSAPKALEFAHGTTTLAFVYGGGIIVSVDSKSTQGPYVASRSVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPQLYYVDNDGTRLHGQRFSCGSGSTYAYGVLDTGFKWDMNDEEAYELGRRAVYHATHRDAYSGGAINVYHVQKDGWKKISSDDCFKLYQKYYNIVP 266          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5_PONAB (Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 6.825e-62
Identity = 113/176 (64.20%), Postives = 136/176 (77.27%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCN 747
            GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK +ISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+             Y AT+++A SGG  N
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVN 234          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5_HUMAN (Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 6.825e-62
Identity = 113/176 (64.20%), Postives = 136/176 (77.27%), Query Frame = 1
Query:  220 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCN 747
            GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK +ISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+             Y AT+++A SGG  N
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVN 234          
BLAST of DY305923 vs. ExPASy Swiss-Prot
Match: PSB5_SCHPO (Proteasome subunit beta type-5 OS=Schizosaccharomyces pombe GN=pts1 PE=2 SV=3)

HSP 1 Score: 219.55 bits (558), Expect = 3.281e-56
Identity = 113/202 (55.94%), Postives = 143/202 (70.79%), Query Frame = 1
Query:  142 PSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRKISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSXXXXXXXXXXXXYPATFKNAPSGGGCN 747
            P  +L L    DE  K+    +K   GTTTLAF ++ G++V  DSRAS G  I+SQ+VKK+IEINPY+LGT+AGGAADCQFW   LG++CRLH+L NK  ISV+ ASK+L+NI YSY+G GLS+GTM+AG  + G  LYY+DS+G RLKG  FSVGSGS +AYGVLDSGY++D+S              AT ++A SGG  N
Sbjct:   36 PQSSLYLRNLTDE-TKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVN 236          
The following BLAST results are available for this feature:
BLAST of DY305923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PSB5B_ARATH3.348e-10173.56Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]
PSB5A_ARATH9.742e-10172.41Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSB5_SPIOL2.653e-9871.43Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSB5_MOUSE1.375e-6258.82Proteasome subunit beta type-5 OS=Mus musculus GN=... [more]
PSB5_RAT3.064e-6258.33Proteasome subunit beta type-5 OS=Rattus norvegicu... [more]
PSB5_BOVIN4.001e-6256.48Proteasome subunit beta type-5 OS=Bos taurus GN=PS... [more]
PSB5_DICDI5.226e-6251.48Proteasome subunit beta type-5 OS=Dictyostelium di... [more]
PSB5_PONAB6.825e-6264.20Proteasome subunit beta type-5 OS=Pongo abelii GN=... [more]
PSB5_HUMAN6.825e-6264.20Proteasome subunit beta type-5 OS=Homo sapiens GN=... [more]
PSB5_SCHPO3.281e-5655.94Proteasome subunit beta type-5 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DF04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305923 ID=DY305923; Name=DY305923; organism=Citrus sinensis; type=EST; length=1275bp
TTTCTGCTCGCAACTCTTAGCTACATTGTCGTTTAATCTTAAATTCAGTG
CGTAGACATGAAGCTCGACACTAGCGGTCTTGAGTCCACTTCTCCATTTT
TCGGGTCAGGCGACGAGCTCTGTCCTGAGTTATCAGCTGCACCATCATTT
GCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAGGACACTAAAGC
TACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTTTATCTTTAAAG
AGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGGGAGGCTATATC
TCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTACATGCTTGG
CACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAGAAATCTGG
GCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAAAATTTCAGTT
ACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTATCGTGGAAT
GGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGACTGGTCCTG
GGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAGGAACACGGTTC
TCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTGGACAGCGGGTA
CAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAAAATAGCTA
TTTATCCTGCAACATTCAAAAATGCACCCAGTGGTGGTGGTTGCAACCGT
TTATTATGTGGAACCAAAGGAATGGAAAAACCTTCGGGTATGTAATGTTT
GAGAACTTCCTACAATTATTATCAACCACCCCCNCGGGGTGAGANTACGA
AATGGCTGAGATAACAGGGGGCATATTTAATCTTGTGTAANATGGCCACA
GTTGTTAGAATTTCCTCAAATTTAGAAAAATACAGGGAGGAAGTGCTGGG
AAATTGCCTGCGAANTGTAGAGAAGGTCTTGTGTGAGTGCTTCGGGGTGG
ATACTCGTTGTAATCACTTGAGAAGTGTAATGCGCTGGGTGGTGAGGANG
GGGGGTTCCTGGTGTGAGGTGGAGTGGTCTGGGAGGTTGGGTTGGGGTGT
TCCACATTTGGGATGGGAGTGAGGCAATGGGTATGATGGGGAGGATGTTA
GCGAGGGTAGGAGGAAGAGGGAAGGAGCGGGTGGGGGATGAGGTGAGAGG
TTATATAGTTAGATTGATGTATGAAATTTACGCTTGCAGAGTAGGCACCG
CNGAGGTCATGCATCAATACGTATC
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