EY702688

Overview
NameEY702688
Unique NameEY702688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12370 contig Csv1_Contig12370:120..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702688 vs. ExPASy Swiss-Prot
Match: RR5_SPIOL (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.082e-30
Identity = 93/254 (36.61%), Postives = 114/254 (44.88%), Query Frame = 1 
Query:  139 RLPKLTLSTVLVRASESDKPN----------------------GIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVSGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTGPMTKYLTFPHRSXXXXXXXXXXAQTXXXXXXXXXXXXXXXXXEMAGVEK-LGGSTGS 828
            R+P    +T L+  S S KP                        I F + +NPDE+   F             + DE P E+E+EIA AYEELYG AY+G S+ GNDVY MDSK KK + FG K+KKEK++DGFEE                 ++FRAI                        QK+AVDARRNI+T PMTKYLTFPHR+           +                  EMAGVE  LG   GS
Sbjct:   20 RIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEEIT-FDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGS 272
[Close]
BLAST of EY702688 vs. ExPASy Swiss-Prot
Match: RR5_ARATH (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.666e-29
Identity = 90/225 (40.00%), Postives = 104/225 (46.22%), Query Frame = 1 
Query:  160 STVLVRASESDKPNGIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVSGNDVYVMDSKAKKTSAF-GKTKKEKVKDGFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTGPMTKYLTFPHRSXXXXXXXXXXAQTXXXXXXXXXXXXXXXXXEMAGVEK-LGGSTGS 828
            S  LV+AS +D    I F+D         VF              FDE   ETE+EIA A+EELYGPAY+G S+ G D+YVMDSK KK+S   GK KK+K++DGFEE                 LKFRAI                        QKSA+DARRNIV  PMTKY TFPHRS           +                  EMAGVE  LG   GS
Sbjct:   44 SLTLVKASSTDTET-IFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGS 267
The following BLAST results are available for this feature:
BLAST of EY702688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RR5_SPIOL1.082e-3036.6130S ribosomal protein S5, chloroplastic OS=Spinaci... [more]
RR5_ARATH2.666e-2940.0030S ribosomal protein S5, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-B03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702688 ID=EY702688; Name=EY702688; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGCACATCACCAATGGCAACAACAGCATCAGCAACAAGAGC
AACCCTTTCTTCTCTCTCGTCATTGTCTTTGTCTCTATCTCTTCACCCGA
CTCCCCGCCTCTCATTCCTCTCCACTGCAAAACTCACCAGGCTCCCAAAA
CTCACCCTCTCGACCGTCCTCGTCAGAGCCTCCGAATCCGACAAACCAAA
CGGCATCGTTTTCGACGACTTCAACAACCCAGATGAAGACGCCGCCGTTT
TCGACCCACCGACGCCCCCGGAGGATTACACTCCCCCGCCCTCCTTCGAC
GAGCTCCCAATGGAAACCGAGGACGAAATTGCCGCTGCTTACGAAGAATT
GTACGGACCCGCGTACGCGGGAGTCAGCGTCTCGGGGAATGATGTTTATG
TGATGGACTCGAAGGCGAAAAAGACGAGTGCTTTTGGGAAAACGAAGAAG
GAGAAAGTGAAGGATGGGTTTGAAGAAAGAGTGGTTCAAGTCAGAAGAGT
GACGAAGGTGGTCAAAGGAGGGAAGCAGTTGAAGTTTAGAGCTATTGTTG
TGGTTGGTGATAAGAAAGGCCAAGTTGGTGTTGGCGTTGCCAAAGCTAAA
GAAGTTATTGCTGCCGTGCAGAAATCCGCCGTTGATGCTAGGAGGAATAT
TGTTACTGGTCCTATGACTAAGTACTTGACTTTCCCACACAGATCTGATG
GTGATTTTGGGGGCGGCTAAGGTGATGCTCAGACCTGCTTCTCCTGGTAC
TGGAGTGGATGCTGGNAGTGCTGTTAGAATTGTTCTGAAATGGCAGGTGT
TGAGAAGCTTGGGGGAAGCACTGGGAGTACAATGCCTCCACAATGCTAAG
CAACGGTGTTGCAGGAAAAAATGACCAGTGGGGTGA
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