EY702685

Overview
NameEY702685
Unique NameEY702685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12215 contig Csv1_Contig12215:33..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702685 vs. ExPASy Swiss-Prot
Match: SPF27_ARATH (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.479e-88
Identity = 131/182 (71.98%), Postives = 152/182 (83.52%), Query Frame = 2
Query:   80 GDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLD-TTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRER 610
            GD+LMLEA P+AARPW    NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSSKKP+DFLK+LPPL KF F+N P+L KEYERVRAGKPP  +D  +RY+LE+ PANKRND++AWKQ LQK QR  Q +LI LENLELMSK GPE+WRQ+N RLE  L  MQRLAQEQNE+IE VNRER
Sbjct:    6 GDVLMLEATPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSSKKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDAAWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEKVNRER 187          

HSP 2 Score: 85.8853 bits (211), Expect = 4.479e-88
Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 1
Query:  607 KKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWDLDIDME 783
            +KYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ I+  +KEAAE GW+L+  +E
Sbjct:  187 RKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLEEKLE 245          
BLAST of EY702685 vs. ExPASy Swiss-Prot
Match: SPF27_PONAB (Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.201e-23
Identity = 54/159 (33.96%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  137 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPAN-KRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRER 610
            ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E+ER+ A +P  +L   RY+L   P+  K+ND +AW++ +  +    +HQ +R+ENLELMS+HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +R
Sbjct:   12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNEFERLAARQPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQR 168          

HSP 2 Score: 29.6462 bits (65), Expect = 6.201e-23
Identity = 12/50 (24.00%), Postives = 26/50 (52.00%), Query Frame = 1
Query:  607 KKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 756
            +K  Q     +L  + + W  L +KN EI+     +E+ I +++++  E+
Sbjct:  168 RKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEA 217          
BLAST of EY702685 vs. ExPASy Swiss-Prot
Match: SPF27_MOUSE (Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.201e-23
Identity = 52/158 (32.91%), Postives = 90/158 (56.96%), Query Frame = 2
Query:  137 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRER 610
            ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E+ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELMS+HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +R
Sbjct:   12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQR 167          

HSP 2 Score: 29.6462 bits (65), Expect = 6.201e-23
Identity = 12/50 (24.00%), Postives = 26/50 (52.00%), Query Frame = 1
Query:  607 KKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 756
            +K  Q     +L  + + W  L +KN EI+     +E+ I +++++  E+
Sbjct:  167 RKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEA 216          
BLAST of EY702685 vs. ExPASy Swiss-Prot
Match: SPF27_HUMAN (Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.201e-23
Identity = 52/158 (32.91%), Postives = 90/158 (56.96%), Query Frame = 2
Query:  137 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRER 610
            ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E+ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R+ENLELMS+HG   W+ +N+ L  ++   Q+  Q+  + I+ +N +R
Sbjct:   12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQR 167          

HSP 2 Score: 29.6462 bits (65), Expect = 6.201e-23
Identity = 12/50 (24.00%), Postives = 26/50 (52.00%), Query Frame = 1
Query:  607 KKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 756
            +K  Q     +L  + + W  L +KN EI+     +E+ I +++++  E+
Sbjct:  167 RKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIKQQHGEA 216          
BLAST of EY702685 vs. ExPASy Swiss-Prot
Match: SPF27_DANRE (Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.628e-22
Identity = 50/157 (31.85%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  140 IDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRER 610
            +DALPY D  Y    V+E    +VE+E RR  +   ++L  LP      FE   ++  E+ER+ A +P  +L   RY+L    + ++ND +AW+  +  +    +HQ +R+ENLELM+++G   W+  N  L  ++   Q+  Q   ++I+ +N +R
Sbjct:   13 VDALPYFDQGYDATGVREAAAALVEEETRRY-RPTKNYLSYLPTPDFSAFETE-IMRNEFERLAARQPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQYGTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQR 167          

HSP 2 Score: 29.6462 bits (65), Expect = 6.628e-22
Identity = 12/49 (24.49%), Postives = 26/49 (53.06%), Query Frame = 1
Query:  607 KKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 753
            +K  Q     +L  L + W  L +KN EI+ A   +E+ + +++++  +
Sbjct:  167 RKNDQLAGGAKLRELESNWVSLVSKNYEIERAIVQLENEVAQMKQQQGD 215          
BLAST of EY702685 vs. ExPASy Swiss-Prot
Match: SPF27_XENTR (Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.888e-20
Identity = 53/158 (33.54%), Postives = 91/158 (57.59%), Query Frame = 2
Query:  137 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRER 610
            ++DALPY D  Y    V+E    +VE+E RR  +   ++L  LP      FE   ++  E+ER+ + +P  +L   RY+L    + +RND +AW++ +  +    +HQ +R+ENLELMS+HG   W+ +N+ L  ++   Q+  Q+  +KI+ +N +R
Sbjct:   12 VVDALPYFDQGYDAQGVREAAAALVEEETRRY-RPTKNYLSYLPTPDYSAFETE-IMRNEFERLSSRQPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQR 167          
BLAST of EY702685 vs. ExPASy Swiss-Prot
Match: SPF27_DICDI (Pre-mRNA-splicing factor spf27 OS=Dictyostelium discoideum GN=spf27 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 2
Query:  131 AEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPA--NKRNDESAWKQALQKAQRLSQHQLIRLENLELMSKHGPEVWRQHNQRLEALLLGMQRLAQEQNEKIEAVNRERNI 616
            AE ID+LPY+DD   +   +E +++++  EM  S+  P D+L  LP      + N   L  +++R+   +     D  RY++E       ++ +E  W  +L  A+   +HQ IR  NLEL+ ++G   W+ +   LE L   +++   ++ ++IE +N +R +
Sbjct:    8 AENIDSLPYVDDS-VNENEQELINKLISDEM--STFTPPDYLAQLPSFIDIDYNNFQFLENDFKRMEKEEKMKEFDIGRYKVEPTTTMIKQQLNEKQWNDSLNNARSQLEHQDIRKINLELLQRYGGNSWKLYLSDLEILQKTLKKQLDQKKQQIEEINIQRKL 168          
The following BLAST results are available for this feature:
BLAST of EY702685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SPF27_ARATH4.479e-8871.98Pre-mRNA-splicing factor SPF27 homolog OS=Arabidop... [more]
SPF27_PONAB6.201e-2333.96Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=... [more]
SPF27_MOUSE6.201e-2332.91Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=... [more]
SPF27_HUMAN6.201e-2332.91Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=... [more]
SPF27_DANRE6.628e-2231.85Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=b... [more]
SPF27_XENTR2.888e-2033.54Pre-mRNA-splicing factor SPF27 OS=Xenopus tropical... [more]
SPF27_DICDI1.813e-1428.05Pre-mRNA-splicing factor spf27 OS=Dictyostelium di... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-A08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702685 ID=EY702685; Name=EY702685; organism=Citrus sinensis; type=EST; length=874bp
GGAAAGGATACGACAAAAAAGTAAAAAGGCAAAAAAACAACTGTTTAGCT
CCTGAATGGCGAGCAGTAGCAATAATAACGGCGACATTCTGATGCTGGAG
GCTCCACCGGATGCGGCCAGGCCATGGAACGCTGAAATCATCGACGCGTT
GCCGTACATCGACGACGACTATGCCGACCCTAGAGTCAAGGAAGAGGTTG
ACCGTATGGTCGAGCAAGAGATGCGTCGTAGCTCCAAGAAGCCCTCCGAT
TTTCTGAAAAATCTTCCCCCTCTCTCCAAGTTCAGATTCGAGAATCATCC
AATGCTTGCGAAAGAGTATGAGCGTGTGAGAGCCGGGAAGCCTCCTGCGG
TGCTTGATACTACACGGTATCAATTGGAAATTCTGCCGGCGAATAAAAGA
AATGATGAATCTGCTTGGAAGCAGGCACTTCAGAAAGCTCAGCGCTTATC
GCAGCATCAATTGATCAGGCTGGAAAATTTGGAGTTGATGTCTAAACATG
GTCCTGAAGTCTGGAGGCAGCACAATCAACGATTGGAAGCATTACTATTG
GGAATGCAGAGATTAGCTCAGGAGCAAAATGAAAAGATTGAAGCTGTAAA
TCGTGAAAGAAATATCATCAGCAAAATACTGCATATGAGTTGAATGCTTT
GTCCACACAATGGAGGGAGCTTTGTGCCAAAAATATAGAAATCCAAGCTG
CTTGTGCAAATATTGAAAGTCACATTGAGGAATTGAGGAAAGAAGCTGCT
GAAAGTGGCTGGGACTTAGATATTGATATGGAGAAACGGTTTTTGGCGCA
ATCACGAAAGGCCCACTAAAAATTTGGCAGCGTCCACCATGGTGATAAGT
ACAAGGGAGGGTCTCCATCCACTA
back to top