DY305878

Overview
NameDY305878
Unique NameDY305878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1198
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305878 vs. ExPASy Swiss-Prot
Match: Y1390_ARATH (Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.250e-34
Identity = 79/176 (44.89%), Postives = 109/176 (61.93%), Query Frame = 1
Query:   97 ENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGEL-HPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAE-----EMEQQFQSTSAVDYSLKEGETLHLHLKNK 606
            E EE E  E  L  V E  VY IPPR ++  Y+  EW  +   W G L+VVS  + C I+LED ++G+L+A  F+  G   + VEP +DSSRYFVLRI++   GR ++AFIG+GF ER EA+DF  AL DH KY+ ++K  E     E +       AV++ LKEGET+ +++K K
Sbjct:    5 EEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDD---GRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPK 177          
BLAST of DY305878 vs. ExPASy Swiss-Prot
Match: NECP1_BOVIN (Adaptin ear-binding coat-associated protein 1 OS=Bos taurus GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.724e-30
Identity = 77/184 (41.85%), Postives = 107/184 (58.15%), Query Frame = 1
Query:  121 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN---KSSGRVKSKFFEQGLNDLSL 663
            E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GEL+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L DH K++ ++    +  Q+  S   +D   KEG+T+ L + N   K  G  K K    G   LSL
Sbjct:    8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFSDRGDAFDFNVSLQDHFKWVKQESEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITTKKGGTSKPK--TAGTGGLSL 186          
BLAST of DY305878 vs. ExPASy Swiss-Prot
Match: NECP1_PONAB (Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 8.296e-30
Identity = 71/173 (41.04%), Postives = 104/173 (60.12%), Query Frame = 1
Query:  121 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHL---HLKNKSSGRVKSK 630
            E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GEL+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L DH K++ ++    +  Q+  +   +D   KEG+T+ L   ++ NK  G  K +
Sbjct:    8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLSIGNITNKEGGASKPR 177          
BLAST of DY305878 vs. ExPASy Swiss-Prot
Match: NECP1_HUMAN (Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens GN=NECAP1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 8.296e-30
Identity = 71/173 (41.04%), Postives = 104/173 (60.12%), Query Frame = 1
Query:  121 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHL---HLKNKSSGRVKSK 630
            E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GEL+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L DH K++ ++    +  Q+  +   +D   KEG+T+ L   ++ NK  G  K +
Sbjct:    8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLCIGNITNKKGGASKPR 177          
BLAST of DY305878 vs. ExPASy Swiss-Prot
Match: NECP2_RAT (Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus GN=Necap2 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.083e-29
Identity = 71/167 (42.51%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  103 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN 603
            EE+E  E VL    E +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A + +     VE V DSSRYFV+RIE+  G   R AFIGIGF +R +A+DF  AL DH K++ ++    +  Q       +D   KEG+T+ +++ N
Sbjct:    2 EESE-YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKEGQTIKINIAN 164          
BLAST of DY305878 vs. ExPASy Swiss-Prot
Match: NECP1_RAT (Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus GN=Necap1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.083e-29
Identity = 76/184 (41.30%), Postives = 107/184 (58.15%), Query Frame = 1
Query:  121 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN---KSSGRVKSKFFEQGLNDLSL 663
            E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GEL+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L DH K++ ++    +  Q+  S   +D   KEG+T+ L + N   K  G  K +    G   LSL
Sbjct:    8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITAKKGGTSKPR--ASGTGGLSL 186          
BLAST of DY305878 vs. ExPASy Swiss-Prot
Match: NECP2_HUMAN (Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens GN=NECAP2 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.848e-29
Identity = 69/166 (41.57%), Postives = 102/166 (61.45%), Query Frame = 1
Query:  106 ETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN 603
            E    E VL    + +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A + +     VE V DSSRYFV+RIE+  G   R AFIGIGF +R +A+DF  AL DH K++ ++    +  Q       +D   KEG+T+ L++ N
Sbjct:    2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIAN 164          
BLAST of DY305878 vs. ExPASy Swiss-Prot
Match: NECP1_MOUSE (Adaptin ear-binding coat-associated protein 1 OS=Mus musculus GN=Necap1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 2.414e-29
Identity = 75/184 (40.76%), Postives = 107/184 (58.15%), Query Frame = 1
Query:  121 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN---KSSGRVKSKFFEQGLNDLSL 663
            E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GEL+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L DH K++ ++    +  Q+  +   +D   KEG+T+ L + N   K  G  K +    G   LSL
Sbjct:    8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEMDNRPKLDLGFKEGQTIKLSIGNITAKKGGASKPR--ASGTGGLSL 186          
BLAST of DY305878 vs. ExPASy Swiss-Prot
Match: NECP2_BOVIN (Adaptin ear-binding coat-associated protein 2 OS=Bos taurus GN=NECAP2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 3.152e-29
Identity = 71/165 (43.03%), Postives = 104/165 (63.03%), Query Frame = 1
Query:  103 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHL 597
            EE E  E VL    + +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A + +     VE V DSSRYFV+RIE+  G   R AFIGIGF +R +A+DF  AL DH K++ ++    +  Q       +D S KEG+T+ L++
Sbjct:    2 EEAE-YESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNI 162          
BLAST of DY305878 vs. ExPASy Swiss-Prot
Match: NECP2_MOUSE (Adaptin ear-binding coat-associated protein 2 OS=Mus musculus GN=Necap2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.117e-29
Identity = 69/167 (41.32%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  103 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN 603
            EE+E  E VL    E +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED+++GEL+A+A + +     VE V DSSRYFV+RIE+  G   R AFIG+GF +R +A+DF  AL DH K++ ++    +  Q       +D   K+G+T+ +++ N
Sbjct:    2 EESE-YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGLGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKDGQTIKINIAN 164          
The following BLAST results are available for this feature:
BLAST of DY305878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
Y1390_ARATH7.250e-3444.89Uncharacterized protein At1g03900 OS=Arabidopsis t... [more]
NECP1_BOVIN3.724e-3041.85Adaptin ear-binding coat-associated protein 1 OS=B... [more]
NECP1_PONAB8.296e-3041.04Adaptin ear-binding coat-associated protein 1 OS=P... [more]
NECP1_HUMAN8.296e-3041.04Adaptin ear-binding coat-associated protein 1 OS=H... [more]
NECP2_RAT1.083e-2942.51Adaptin ear-binding coat-associated protein 2 OS=R... [more]
NECP1_RAT1.083e-2941.30Adaptin ear-binding coat-associated protein 1 OS=R... [more]
NECP2_HUMAN1.848e-2941.57Adaptin ear-binding coat-associated protein 2 OS=H... [more]
NECP1_MOUSE2.414e-2940.76Adaptin ear-binding coat-associated protein 1 OS=M... [more]
NECP2_BOVIN3.152e-2943.03Adaptin ear-binding coat-associated protein 2 OS=B... [more]
NECP2_MOUSE4.117e-2941.32Adaptin ear-binding coat-associated protein 2 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CH05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305878 ID=DY305878; Name=DY305878; organism=Citrus sinensis; type=EST; length=1198bp
GAAAAGAGTGTATTGATTTTCTCTCTTTAGATCATGATGGCGAAGGAAGA
AGAGAAGAAAGTAAGAGAAATAGAGGATCAAAACGACGTCGTGGGCGAGA
ACGAAGAAACTGAAGCTATAGAGTTTGTTCTCTTTCAAGTCTCGGAATGT
TACGTTTATTTGATACCCCCGAGGAAAAGTGCAGCTTCATACAGGGCTGA
TGAATGGAATGTTAACAAATGGGCATGGGAGGGAATGCTAAAAGTTGTCA
GCAAGGGAGAAGAGTGCATTATCAAACTTGAAGATAAGTCCACAGGTGAA
TTATATGCTCGGGCATTTTTGAGAAAGGGTGAACTGCATCCAGTGGAACC
TGTGATTGATAGCAGCAGGTACTTTGTTCTTCGGATAGAGGAAAACATAG
GTGGTCGCCTTAGGCATGCTTTCATTGGCATCGGATTCCGGGAAAGGACA
GAAGCTTATGATTTCCAAGCAGCCCTTCATGATCACATGAAATATTTGGA
CAAAAAGAAAACTGCAGAAGAGATGGAACAGCAATTCCAGAGCACATCAG
CTGTTGATTACAGTTTAAAAGAGGGGGAGACCCTTCACCTCCATCTAAAG
AACAAAAGCAGTGGCCGAGTGAAATCCAAGTTTTTTGAGCAGGGTCTGAA
TGATCTCTCATTGGACGATAAGGGTAACCGTAAAGAACCCGTGATTTGTC
TCANACCACTGCCACCTCCCCCAGCACCTCTTTCACCTGCTACAGCTGCT
CGGATGTCTCCCTCAAACTCACCCACAAAATTCAGTCTTGAAGGAAGTTC
TAAGGATGCGTCTCCCGACTCAACCAAAAAGACTCCAAAGAACACCTTTC
CCCCAAACCCCAAAACTGGGGAAATACCGATGAAGATTTTGGGGAATTTT
CAGCTGCCGGATAAAAGGTTCTAGAAAATGACAAATCCTACGGGAAAAAT
GGGGGATCCCTTGGTTTTATAATTGGCACAGCCAAAAATATTTCCGGTGA
AGGGGGAAAAAATTTTGGAAAAACCACCCTAACCCAAGTTACCCTTGTTT
GTTTTTTTATAATTTTTTTTTTTTTTAACTGGGGAAAATTTTTTTTAAAA
CCCCCCCCTCTGTTTTTTTTTCTGGGGCACACCCTCTTGAAATTTTTTCC
TCTTTTGGGGGAAAAAAAAAAATTTTTACACACAAATTTTTTTTTCGA
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