DY305865

Overview
NameDY305865
Unique NameDY305865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1240
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305865_ssr1042 microsatellite DY305865_ssr1042:1042..1057. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3612 contig Csv1_Contig3612:15..1255. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.716e-70
Identity = 122/195 (62.56%), Postives = 159/195 (81.54%), Query Frame = -3
Query:  408 QKWETIQNGGLELDPDEVLA*NFCSGF*NFLDETG-DVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAW-YHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 986
            Q WETI+   L++ P+EVLA N      N  DETG + NCPR++VLKLIR + PD+F+++IVNGS+NAPFF++RF+EA++H+S+LFDMFD+T+PR++ ER+ FERE YGREAMNVIACE  +RVERPETY+QWQ R +RAGFKQ  +  EL+E   GKLK W YHKDFV+D+++ W+LQGWKGR ++ASSCWVPA
Sbjct:  436 QNWETIRIEDLDIRPNEVLAVNAGLRLKNLQDETGSEENCPRDAVLKLIRNMNPDVFIHAIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFKQKTIKPELVELFRGKLKKWRYHKDFVVDENSKWLLQGWKGRTLYASSCWVPA 630          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 3.955e-67
Identity = 122/193 (63.21%), Postives = 154/193 (79.79%), Query Frame = -3
Query:  408 QKWETIQNGGLELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 986
            QKWETIQ   L+L   E +  N    F N LDET  VN PR++VLKLIRKI P++F+ +I++G+YNAPFFVTRFREA+FH+S++FDM D+ + RED  RLM+E+E YGRE +NV+ACEG ERVERPETYKQWQAR IRAGF+QLPL +ELM+ L  K++  Y K+F +DQ+ NW+LQGWKGRIV+ASS WVP+
Sbjct:  575 QKWETIQVEDLKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKLIRKINPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVNVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFDVDQNGNWLLQGWKGRIVYASSLWVPS 767          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 1.503e-66
Identity = 122/193 (63.21%), Postives = 154/193 (79.79%), Query Frame = -3
Query:  411 QKWETIQNGGLELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYH-KDFVIDQDNNWMLQGWKGRIVFASSCWVP 986
            QKWE+I+   L+L   E +A N    F N LDET  V+ PR++VLKLIRKIKPD+F+  I++GSYNAPFFVTRFRE +FH+SSLFDM DT + REDP R+MFE+E YGRE MNV+ACEG ERVERPE+YKQWQAR +RAGF+Q+PL +EL++KL   +++ Y  K+F +DQD +W+LQGWKGRIV+ SS WVP
Sbjct:  501 QKWESIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKELVQKLKLMVESGYKPKEFDVDQDCHWLLQGWKGRIVYGSSIWVP 693          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 3.348e-66
Identity = 117/195 (60.00%), Postives = 152/195 (77.95%), Query Frame = -3
Query:  408 QKWETIQNGGLELDPDEVLA*NFCSGF*NFLDET-GDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAW-YHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 986
            + WETI+    ++ P+EVLA N    F N  D   G+ +CPR+  LKLIR + P++F++S VNGS+NAPFF TRF+EA+FH+S+LFD+F  T+ +E+PER+ FE E YGRE MNVIACEG++RVERPETYKQWQ R IRAGFKQ P+  EL++    K+K W YHKDFV+D+D+NW LQGWKGRI+F+SSCWVP+
Sbjct:  468 KNWETIKMEEFKIRPNEVLAVNAVLRFKNLRDVIPGEEDCPRDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTTRFKEALFHYSALFDLFGATLSKENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMIRAGFKQKPVEAELVQLFREKMKKWGYHKDFVLDEDSNWFLQGWKGRILFSSSCWVPS 662          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 6.535e-62
Identity = 113/192 (58.85%), Postives = 140/192 (72.92%), Query Frame = -3
Query:  411 QKWETIQNGGLELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVP 986
            +KW+ IQ   L++D DE+   N      N  DE+  V   R++VL LI KI PD+FV  IVNG+YNAPFFVTRFREA+FHFSS+FDM +T +PRED ER+  E EV+GREA+NVIACEG ERVERPETYKQW  R +R+G  Q+P +  +M+  + K+  +YHKDFVIDQDN W+LQGWKGR V A S W P
Sbjct:  523 KKWDAIQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWKP 714          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 8.266e-57
Identity = 106/195 (54.36%), Postives = 140/195 (71.79%), Query Frame = -3
Query:  408 QKWETIQNGGLELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDP--ERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 986
            +KWETI    L ++P E    N         DET  ++ PR++VLKL R I PD+FV + +NG YN+PFF+TRFREA+FH+SSLFDMFDTTI  ED    R + ERE+  R+AM+VI+CEG ER  RPETYKQW+ R +RAGFK   +++++M++    ++  YH+DFVID DNNWMLQGWKGR+++A SCW PA
Sbjct:  406 KKWETITLDELMINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLFDMFDTTIHAEDEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWKPA 600          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 4.245e-53
Identity = 100/193 (51.81%), Postives = 134/193 (69.43%), Query Frame = -3
Query:  408 QKWETIQNGGLELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 986
            + WE I    L ++  E    N         DET  +N PR++ LKL R I PD+FV + +NG+YN+PFF+TRFREA+FH SSLFDM++TT+  +D  R + ERE+  R+AM+VIACEG ER  RPETYKQWQ R +RAGF+   L++++++     +K  YHKDFVID DN+WM QGWKGR+++A SCW PA
Sbjct:  389 KNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWKPA 581          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 5.778e-26
Identity = 59/180 (32.78%), Postives = 104/180 (57.78%), Query Frame = -3
Query:  417 LELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 956
            LE+ P E L+ NF     +  DE+ DVN PR+ +L++++ + P +          N   F+ RF E + ++S++F+  D  +PR++ ER+  E+    ++ +N+IACEG +RVER E   +W++R   AGF+  PL+   +  ++ KL A Y   + +D+ +  ML GW+ R + ++S W
Sbjct:  392 LEIRPGEALSVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRDNKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLS-SYVNSVIRKLLACYSDKYTLDEKDGAMLLGWRSRKLISASAW 570          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.062e-22
Identity = 57/185 (30.81%), Postives = 99/185 (53.51%), Query Frame = -3
Query:  417 IQNGGLELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 971
            ++   L + P E LA NF     +  DE+      R+ +L++++ + P +     +  + N   F  RF E + +++++F+  D T+PR+D ER+  E+    RE +N+IACEG ER ER E + +W+AR   AGF+  PL+  L+   +  L   Y  ++ + + +  +  GWK R +  SS W
Sbjct:  360 VEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAPFPQRFAETLDYYTAIFESIDLTLPRDDRERINMEQHCLAREIVNLIACEGEERAERYEPFGKWKARLTMAGFRPSPLS-SLVNATIRTLLQSYSDNYKLAERDGALYLGWKSRPLVVSSAW 543          
BLAST of DY305865 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.777e-20
Identity = 53/180 (29.44%), Postives = 95/180 (52.78%), Query Frame = -3
Query:  417 LELDPDEVLA*NFCSGF*NFLDETGDVNCPRNSVLKLIRKIKPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTIPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 956
            L  DPDE LA N         DE+     PR+ +L+ ++ +KP +        + N   F+ R  E+   + +L +  ++T+P  + +R   E  + GR+ +N +ACEG++R+ER E + +W+ R   AGF+ +PL++++ E +  +     H  F + +DN  +  GW GR +  +S W
Sbjct:  462 LGCDPDETLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLESVESTVPSTNSDRAKVEEGI-GRKLVNAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRGNR-VHPGFTVKEDNGGVCFGWMGRALTVASAW 639          
The following BLAST results are available for this feature:
BLAST of DY305865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SCL34_ARATH1.716e-7062.56Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]
SCL14_ARATH3.955e-6763.21Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
SCL33_ARATH1.503e-6663.21Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
SCL31_ARATH3.348e-6660.00Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]
SCL9_ARATH6.535e-6258.85Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SCL11_ARATH8.266e-5754.36Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
SCL30_ARATH4.245e-5351.81Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
CIGR1_ORYSJ5.778e-2632.78Chitin-inducible gibberellin-responsive protein 1 ... [more]
CIGR2_ORYSJ5.062e-2230.81Chitin-inducible gibberellin-responsive protein 2 ... [more]
SCL8_ARATH2.777e-2029.44Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CF05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305865 ID=DY305865; Name=DY305865; organism=Citrus sinensis; type=EST; length=1240bp
AATGAAATTTCAAATTTCACTTTCATTATTACTGATAGAACCAAAACACA
ACTAATGTAACTAAAGGAAATATTTACAGAAACAAAAAGATGAGGTCTAC
ACTGGAGTACCATCACAAACAGCCCCTGCAACAGAACTTAGGGGATTGGA
GAATGTCCCCAAGCTTTTCTCTACCGCATGAAGTTTCTAAACCTATAATT
GTCTACCACCAACATCATCAAGATAACCATACTTTGCACAGTGACCAACG
AGCTATAACCATACTACAGTAATTGCAGGATCATCTGCTGGTTTTTTTTT
TTATTCACTGATGATAAACACCAGGTCAGGAATCTTCATCCACTTCCCAG
GTTATTCTTTCCTGACTGGTCCAGGAAAAATATCATACCTCCCAATCACA
ACTCTGGCGCAGGTACCCAACAAGAGGAAGCAAAAACAATTCTCCCCTTC
CATCCCTGCAGCATCCAGTTGTTGTCTTGATCAATTACAAAGTCCTTGTG
GTACCAAGCCTTCAACTTACCCATAAGTTTCTCCATCAGCTCCTGGTTCA
GTGGCAGCTGCTTAAACCCAGCCCTTATGGTCCGCGCCTGCCATTGCTTG
TATGTCTCAGGCCTCTCAACCCTCTCCAAGCCCTCACAGGCAATAACATT
CATTGCCTCTCGCCCATAAACTTCTCTTTCAAACATCAACCTCTCTGGAT
CTTCACGGGGTATGGTAGTATCAAACATATCAAACAGGGAAGAGAAGTGA
AAGATTGCTTCACGAAATCTTGTGACAAAAAAAGGAGCATTGTAGGACCC
ATTGACAATAGAATTGACAAAAATATCAGGCTTTATCTTCCTGATTAGCT
TCAAGACGGAGTTCCTCGGACAGTTCACATCCCCCGTCTCATCAAGGAAG
TTCTAAAACCCGGAACAAAAGTTTCAAGCAAGCACCTCATCCGGGTCCAA
CTCCAGGCCCCCATTTTGGATTGTTTCCCATTTCTGGAAGGGCCAAAAAA
TTTTAACCCCAAGGAAAAAATAAACCCCCTAAAAAAAACTTAAACAAACA
AACAAACAGTCCCCCCCCAATTCCTTTTTGCCGGGCCCAAAAAACCCAAG
GTTGTGGGAAAACCCCTATCCCCATTTTTTTCTCCTAAACCTTGGGGGAG
GGGGGCCCCCCCGGGTTTTTCCCCCCTTGATAAAAAAAAAAAAATTGTAA
AAAGGGAAACCCCCTCCCCGCCCCCCCCTCTATTTTGGAA
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