DY305863

Overview
NameDY305863
Unique NameDY305863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1097
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY305863 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.195e-25
Identity = 70/198 (35.35%), Postives = 99/198 (50.00%), Query Frame = 1 
Query:   19 YLTNHGIVHHSSCVDTPQPNRIAERKNKHLLEVARALTFTMAVPKTFWGEAVLTATYLINRMPSRVLNFKTPLDTLKNLYPLSKLFCSLTPKVFGCVAFVHIHNQNRGKLDPRALRCVFLGYSPTQKGYKCYHPPTRKFFVLMDVTFFENTSFFPKTSLQGKTRHDKDEDMFWSTLDVVNSNTHESLFPSVSEDSSQP 612
            Y ++HGI H  +   TPQ N +AER N+ ++E  R++     +PK+FWGEAV TA YLINR PS  L F+ P     N     K       KVFGC AF H+  + R KLD +++ C+F+GY   + GY+ + P  +K     DV F E +       +  K ++    +         N  + ES    VSE   QP
Sbjct:  563 YCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTN-----KEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRE-SEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQP 754
[Close]
BLAST of DY305863 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 4.775e-21
Identity = 60/151 (39.74%), Postives = 84/151 (55.63%), Query Frame = 1 
Query:   19 YLTNHGIVHHSSCVDTPQPNRIAERKNKHLLEVARALTFTMAVPKTFWGEAVLTATYLINRMPSRVL--NFKTPLDTLKNLYPLSKLFCSLTPKVFGCVAFVHIHNQNRGKLDPRALRCVFLGYSPTQKGYKCYHPPTRKFFVLMDVTFFE 465
            +    GI +H +   TPQ N ++ER  + + E AR +     + K+FWGEAVLTATYLINR+PSR L  + KTP +   N  P  K       +VFG   +VHI N+ +GK D ++ + +F+GY P   G+K +     KF V  DV   E
Sbjct:  563 FCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHL-----RVFGATVYVHIKNK-QGKFDDKSFKSIFVGYEP--NGFKLWDAVNEKFIVARDVVVDE 705
The following BLAST results are available for this feature:
BLAST of DY305863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
POLX_TOBAC3.195e-2535.35Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME4.775e-2139.74Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2CF03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305863 ID=DY305863; Name=DY305863; organism=Citrus sinensis; type=EST; length=1097bp
GCCACAATACTTGGTTCTTACCTAACAAATCATGGGATTGTACATCATAG
TTCTTGTGTAGATACACCCCAACCAAATAGGATTGCTGAAAGGAAAAACA
AACATCTACTTGAGGTTGCTAGAGCCTTAACATTTACCATGGCAGTACCT
AAAACCTTTTGGGGTGAAGCTGTTCTTACTGCCACTTATCTTATAAACAG
GATGCCATCAAGGGTCTTAAATTTCAAAACTCCACTTGACACATTAAAAA
ATTTATATCCTTTATCAAAACTGTTTTGCTCTCTCACCCCCAAAGTTTTT
GGTTGTGTAGCATTTGTCCATATTCATAACCAAAATCGAGGGAAACTAGA
TCCAAGAGCCCTTCGGTGTGTTTTTTTAGGATATTCTCCTACCCAAAAAG
GTTACAAATGTTACCATCCTCCAACTCGAAAATTTTTCGTGTTAATGGAC
GTTACTTTTTTTGAGAATACTTCTTTCTTTCCCAAAACTTCTCTTCAGGG
GAAGACTAGACATGACAAAGATGAAGATATGTTTTGGTCTACTCTAGATG
TGGTTAATTCCAATACCCATGAGTCTTTATTTCCTAGCGTTTCAGAGGAT
TCTTCCCAGCCTCTGGCTCCAAATATATTCCTAAATGTCCCTAAACCTCA
AGAAAACATTTCCTCCGAGATGCCAAAATCTTCATCATCTAGTGTAGATC
ATCCTAATCCTAATAATTCCCAACCTTTGTCTTCACCAATTGAAACTCCA
TTTAAGTGTGTGCAAGATAGAGACTATGAACTAAAGGTTTACTCAAGAAN
GAACAAGATACAGCCCTCTCAACTCCACCAATCACCTTTGCCCAGTGCTA
AAATTTGGAAAACAAGGGAAACCTCTTTGTATCTAACTTTCAAAAAAATG
TTAATTCATTTGATTTTTCTAATCCTGATTCTCCGTCCTGCACTTTGCCA
CCAATTTCAACTTTTGTTTTCTGGCCACTGCCTGCCCCCTCCTTTTAAAC
CCTTTGTTAACTGGATTGTATACCTCCCTTTTCTTTCCCCAAAAAACATA
ACAGAAAAAAACCTTTTAATTTCCCAAAGGGAAAAAAAAATCCTTTT
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