DY305858

Overview
NameDY305858
Unique NameDY305858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1267
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2050 contig Csv1_Contig2050:63..1329. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305858 vs. ExPASy Swiss-Prot
Match: MUB1_ORYSJ (Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica GN=MUB1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.604e-32
Identity = 58/80 (72.50%), Postives = 72/80 (90.00%), Query Frame = 3
Query:  411 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 650
            VQ+Q EIKFRL DG+DIGPK +PAA++VATLKES+++QWPK+KE GPRTV D+KLI+AGKILENN+TL EC+SP+CD  G
Sbjct:    5 VQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKILENNKTLSECKSPICDFSG 84          

HSP 2 Score: 28.4906 bits (62), Expect = 9.604e-32
Identity = 13/33 (39.39%), Postives = 19/33 (57.58%), Query Frame = 2
Query:  659 TMHVVVHPPSTEEEQRP--ACSPNQKECGCVIL 751
            TMHVVV  P+++++     A  P    CGC I+
Sbjct:   87 TMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119          
BLAST of DY305858 vs. ExPASy Swiss-Prot
Match: MUB2_ARATH (Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 6.149e-31
Identity = 63/85 (74.12%), Postives = 77/85 (90.59%), Query Frame = 3
Query:  402 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 656
            MA V+DQLEIKFRL DGSDIGPK FP AT+VATLKE+V++QWP++KENGP+TVKDVKLISAG+ILENN+T+G+CRSP+ +  G V
Sbjct:    1 MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRILENNKTVGDCRSPVGNFSGAV 85          
BLAST of DY305858 vs. ExPASy Swiss-Prot
Match: MUB1_ARATH (Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana GN=MUB1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.856e-28
Identity = 59/101 (58.42%), Postives = 82/101 (81.19%), Query Frame = 3
Query:  402 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVKPCMLLFTLLLRKKSR 704
            MA V +QLEIKFRLTDGSDIGPK+FP AT+V+ LKE+V+S+WP+EKENGP+TVK+VKLISAGK+LEN++T+ + RSP+ ++ G V    ++    + +K +
Sbjct:    1 MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKEK 101          
BLAST of DY305858 vs. ExPASy Swiss-Prot
Match: MUB6_ARATH (Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.123e-24
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = 3
Query:  402 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVKPCMLLFTL-LLRKKS 701
            MA  +D +E+KFRL DG+DIGP  +  + +V++LKE ++SQWPK+KEN P+TV D+KLI+AGKILENNRTL E R P+C++PG +    ++  L  L KKS
Sbjct:    1 MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKS 101          
BLAST of DY305858 vs. ExPASy Swiss-Prot
Match: MUB3_ORYSJ (Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MUB3 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.815e-22
Identity = 47/85 (55.29%), Postives = 68/85 (80.00%), Query Frame = 3
Query:  402 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 656
            MA  ++ +E+KFRL DG+DIGP  +  +T+V+ LKE +L++WP++KE  P+TV D+KLI+AG+ILENNRTL E R P+ ++PGGV
Sbjct:    1 MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLAESRVPVGEVPGGV 85          
BLAST of DY305858 vs. ExPASy Swiss-Prot
Match: MUB3_ARATH (Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.378e-20
Identity = 49/109 (44.95%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  414 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVKPCMLLFTLLLRKKSRGRLAHQIKKSVV 740
            ++ ++IKFRL DGSDIGP  + AA++V  LK+ V+S WPK K   P+ + +VKLIS+GKILENN+T+G+C++P  DI GGV    ++    L K    +   +  K+V+
Sbjct:    4 EESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSKTEKKVDKAPKAVI 112          
BLAST of DY305858 vs. ExPASy Swiss-Prot
Match: MUB5_ARATH (Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.421e-19
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 3
Query:  414 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRS--PLCDIPGGVKPCMLLFTLLLRKKSRGRL 713
            +D +E+KFRL DG+DIGP  +    +VA+LKE +++QWPK+KEN P+ + +VKLI+ GKILENN+TL E RS   + ++PG V    ++    L +K + +L
Sbjct:    4 EDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGGKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKL 105          
BLAST of DY305858 vs. ExPASy Swiss-Prot
Match: MUB4_ARATH (Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.680e-18
Identity = 39/81 (48.15%), Postives = 61/81 (75.31%), Query Frame = 3
Query:  414 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 656
            +D +E+KFRL DGSD+GP  +    +V+ LKE ++S+WPK+K+  P++  D+KLI+AGKILEN +T+ +C++P  D+P  V
Sbjct:    4 EDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKILENGKTVAQCKAPFDDLPKSV 84          
BLAST of DY305858 vs. ExPASy Swiss-Prot
Match: MUB4_ORYSJ (Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp. japonica GN=MUB4 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 5.970e-18
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 3
Query:  405 ASVQDQLEIKFRLTDGSDIGPKSFPA-ATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 647
            A   +++E+KFRL DGSDIGP    A AT+VA LK+ V++ WPK+K   P+T  DVKLIS GKILEN++ + +CR+P  D+P
Sbjct:   17 AEADEEVEVKFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDKNIAQCRAPFGDLP 98          
BLAST of DY305858 vs. ExPASy Swiss-Prot
Match: MUB2_ORYSJ (Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp. japonica GN=MUB2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.737e-17
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  417 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 653
            + +E++FRL DGSDIGP     AT+V  LKE VL++WP+ KE  PRTV DV +I+AG++LENNRTL E R+   + P G
Sbjct:   12 EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVLENNRTLAESRNLAAESPEG 90          
The following BLAST results are available for this feature:
BLAST of DY305858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MUB1_ORYSJ9.604e-3272.50Membrane-anchored ubiquitin-fold protein 1 OS=Oryz... [more]
MUB2_ARATH6.149e-3174.12Membrane-anchored ubiquitin-fold protein 2 OS=Arab... [more]
MUB1_ARATH2.856e-2858.42Membrane-anchored ubiquitin-fold protein 1 OS=Arab... [more]
MUB6_ARATH1.123e-2454.46Membrane-anchored ubiquitin-fold protein 6 OS=Arab... [more]
MUB3_ORYSJ6.815e-2255.29Membrane-anchored ubiquitin-fold protein 3 OS=Oryz... [more]
MUB3_ARATH6.378e-2044.95Membrane-anchored ubiquitin-fold protein 3 OS=Arab... [more]
MUB5_ARATH1.421e-1946.08Membrane-anchored ubiquitin-fold protein 5 OS=Arab... [more]
MUB4_ARATH2.680e-1848.15Membrane-anchored ubiquitin-fold protein 4 OS=Arab... [more]
MUB4_ORYSJ5.970e-1853.66Membrane-anchored ubiquitin-fold protein 4 OS=Oryz... [more]
MUB2_ORYSJ1.737e-1754.43Membrane-anchored ubiquitin-fold protein 2 OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2CE06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305858 ID=DY305858; Name=DY305858; organism=Citrus sinensis; type=EST; length=1267bp
TTGGAAGGAGAAGGCAAGAAATGGAAGCATTGACCTTAGATTTAGAATTA
GATGACTTTGAAAACTCTGAAACTGCCTCCTTTCTAAACACTTATTTTAT
TTCTTCTCTTTATTATTAACTATTGAAAAAAGCCACCACCTTGTTTCTTC
TTCTTAAGGTTTTGGAATTTTTGAAACAATAACTGGGGAAAAAAGGAGTG
ATCCGGATCAGTTTTTGAGCCTACCAAAGTGAGAATATTGATCAATCTGC
AACTTTTTGCGTATTCTGGTGGGTTTTTGATTGCTCAAAAGTAAACCTAT
TGAGGATTGACATATACTTTGGTAGAAGGCTTCAGTGAAGATCTCTGAGA
TTGGAATTTTAAAGTCTTTGAGGTCCTTGGAGTCAATCAGAGAGCTTTAG
AATGGCAAGTGTGCAAGATCAGTTAGAGATCAAGTTCCGATTGACCGATG
GATCGGATATTGGTCCCAAGAGCTTTCCTGCTGCTACAAGTGTTGCAACC
TTGAAAGAAAGCGTTCTTTCTCAATGGCCTAAAGAGAAAGAGAATGGTCC
AAGGACAGTGAAAGATGTAAAGTTAATAAGTGCCGGAAAAATATTGGAGA
ACAATAGAACATTGGGAGAGTGCCGGAGTCCGCTATGTGATATCCCTGGT
GGAGTTAAACCATGCATGTTGTTGTTCACCCTCCTTCTACGGAAGAAGAG
CAGAGGCCGGCTTGCTCACCAAATCAAAAAGAGTGTGGTTGTGTTATATT
ATAGATTGCAAATAAAAGGGTGAAATAAATCTTACCAGAATAATGAACGT
GGAGCTGGATTAATGCATTTGTTTCGTAAATTCCCCACAAACAAAACACC
CCCCTCCCCACCAATTCTATTTCCTTTCATGTTCTACGCTGTCCTCCTTC
TNAAGTGTCCCTCTTATGCNGCGTGATTGCTCCAATCAGCTCCACACTGT
ATGGAACTTTTTAAATGTCTCATGGTGGTATGGAAGTTGCTGCTAAAACT
GNCGAACACATAGGGGTTGCGCTGAGAGGNATAAAGCGGGGAGGGGGGAG
GTAGCGTAGCGGGCACGACAAGCTTAGGAGGAATCGTCTAATAAATTGGG
AAAAANATAGTCATATGCATCAAACAGGCAGGAGTGGTGAGGAAAGCNAC
ATTAACAATATCGATGCTCACCCGTGTGCCCTGGGCTGCGTCCTCAGTGG
ACGAGGGAGAAAGAACATAAGGGGGGACGTTATAGTGCCTGAATGGTATG
CGGTGTAGTAAGAGTGA
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