DY305851

Overview
NameDY305851
Unique NameDY305851
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1280
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305851_ssr28 microsatellite DY305851_ssr28:28..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1895 contig Csv1_Contig1895:16..1290. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY305851 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.904e-28
Identity = 91/247 (36.84%), Postives = 105/247 (42.51%), Query Frame = 2 
Query:  155 EANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLARGTTSTAVLTNCNTTTAASQRQKXXXXXXXXXXXXXDQKLLFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXXRDFDLNLPVLPEL------SPAFFVSGDDEVESPLPAKKPRL 805
            E + H L+ W KRKRS+R  +   EEE LALCL+ML+RG           +  A    +                   FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG                              R FDLN+P +PE               D+EV+SPL  KKPRL
Sbjct:   34 EESGHVLQGWAKRKRSRRQRS---EEENLALCLLMLSRGGKQRVQAPQPESFAAPVPAE-------------------FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPLAFKKPRL 258
The following BLAST results are available for this feature:
BLAST of DY305851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT2.904e-2836.84Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAM2CD04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305851 ID=DY305851; Name=DY305851; organism=Citrus sinensis; type=EST; length=1280bp
CTCACACATTCTGAATCTGAAATTAAGCTCTCTCTCTCTCTCTCTCTCTC
GCTCTTTCACACTCACTCTTGGTTTTAGATTCAAAAGAGTAACGGAGATG
GCACTGGAAGCTCTCAACTCTCCAACTACTTCGACGCCGCCGTTTCACTT
CGAAGAAGCTAATCTTCACTGCCTTGAGCCATGGACCAAACGCAAGCGCT
CAAAGCGTCCACACAATCCTCCAACTGAAGAAGAGTATCTCGCGCTCTGC
CTCGTCATGCTTGCACGTGGCACAACCTCCACCGCCGTCTTAACTAACTG
CAACACGACCACCGCCGCCTCACAGCGACAGAAGTCTCCTGCTCTATCTA
CTGCTGCAACGACGTCGTCCTCTGACCAGAAGCTTCTCTTCAAGTGCAGC
GTGTGCGACAAGGCGTTTTCTTCTTACCAAGCCTTGGGTGGTCACAAGGC
CAGCCACCGTAAGGGATCTGGGGGCGGCGATGAACACTCCGCATCCACTA
CCACCAACACCAACGCAACCGCCACGACCACCGGCGTACCGAACGCCACT
GGTAGGACCCACGAGTGTTCCATCTGTCACAAGTCCTTCCCCACTGGCCA
AGCCTTGGGCGGACACAAACGTTGTCACTACGATGGCGGCGAGAAGAGCG
GAGTGACGTCATCCGGATCCAGTAGCACTCACAGCCAAGTCAGCCACCGT
GACTTTGACCTCAACCTCCCTGTCTTACCGGAGCTCTCCCCTGCTTTCTT
CGTCTCCGGTGATGACGAGGTGGAGAGTCCACTGCCGGCGAAGAAGCCCC
GTCTTTTCTTGCCCCCAAAATCGAAGTTTAATTTACTTAATTGCCACTTT
TTTTTTTTTGTTTTTGGGCTACTTTTAAAGGATGTTAAGTTTAGGCAAAT
TTATTTCGTGTATTTCTTTACTGTTACCTGCGTCCGTGACTGATTTTTTT
GGGGACATAACCATTTTAAAATCCCCACTTTTGCTCCGCTGGGACTTCTC
TGAATGGGAATTTATTCAATTTAATTTTTTTTCAAGTTTTAAAAAAAAAA
AAAAAAAAAATTTCGGGGGGGGGGGGCCCGGGGTACCCCATTTTTCCCCC
TAAAAGGGGAACTCCTAATATAAAATTTCCTCGTGGGGCCTGCCCTTTTT
TTACACAGCCTCTGGGGGGGGGGGGGAAAAACAACCCCGGGGGGGGTTTT
TTCCCCACCCCTTTTATTTTCCGCCCCTCCTTGTGGCCCCACACCCCTTC
TCCCCCCCCCCCCTTTTTTCCCCCCCCCCC
back to top