DY305850

Overview
NameDY305850
Unique NameDY305850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305850 vs. ExPASy Swiss-Prot
Match: XCT_ORYSJ (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. japonica GN=XCT PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 1.383e-67
Identity = 125/169 (73.96%), Postives = 134/169 (79.29%), Query Frame = -1
Query:  222 EAGEQFVGERLQGQGFCEREKLERSPSNSLIVYWGGAGHGGVIQVRRGDTMGEFFRAVQQQLAPEFREFRTTSVENLLYVKEDLFFPHQPSFYELIVNKAGGKSGPLFHFDVHEDVRTIVDATIEKDESHAGKVVGGHWYEKNKHFFPVSRWEIFDPTKKWGRYPIHGD 728
            EA EQ   ERL+ Q   E+E ++  P      YW G GH  VIQVR+GD++GEF RAVQQQLAPEFRE RTTSVENLLYVKEDL  PHQ SFYELI+NKA GKSGPLFHFDVHEDVRTI DAT EKDESHAGKVV  HWYEKNKH FP SRWEI+DPTKKW RY IHGD
Sbjct:  165 EAEEQAERERLKKQWSREQELIKNEPLTITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPEFREVRTTSVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRTIADATKEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 333          
BLAST of DY305850 vs. ExPASy Swiss-Prot
Match: XCT_ORYSI (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. indica GN=XCT PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 1.383e-67
Identity = 125/169 (73.96%), Postives = 134/169 (79.29%), Query Frame = -1
Query:  222 EAGEQFVGERLQGQGFCEREKLERSPSNSLIVYWGGAGHGGVIQVRRGDTMGEFFRAVQQQLAPEFREFRTTSVENLLYVKEDLFFPHQPSFYELIVNKAGGKSGPLFHFDVHEDVRTIVDATIEKDESHAGKVVGGHWYEKNKHFFPVSRWEIFDPTKKWGRYPIHGD 728
            EA EQ   ERL+ Q   E+E ++  P      YW G GH  VIQVR+GD++GEF RAVQQQLAPEFRE RTTSVENLLYVKEDL  PHQ SFYELI+NKA GKSGPLFHFDVHEDVRTI DAT EKDESHAGKVV  HWYEKNKH FP SRWEI+DPTKKW RY IHGD
Sbjct:  165 EAEEQAERERLKKQWSREQELIKNEPLTITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPEFREVRTTSVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRTIADATKEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 333          
BLAST of DY305850 vs. ExPASy Swiss-Prot
Match: XCT_ARATH (Protein XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis thaliana GN=XCT PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 3.080e-67
Identity = 122/169 (72.19%), Postives = 133/169 (78.70%), Query Frame = -1
Query:  222 EAGEQFVGERLQGQGFCEREKLERSPSNSLIVYWGGAGHGGVIQVRRGDTMGEFFRAVQQQLAPEFREFRTTSVENLLYVKEDLFFPHQPSFYELIVNKAGGKSGPLFHFDVHEDVRTIVDATIEKDESHAGKVVGGHWYEKNKHFFPVSRWEIFDPTKKWGRYPIHGD 728
            EA EQ   ERL+ Q   E+E+++  P      YW G GH  VIQVR+GD +G F RAVQQQLAP+FRE RT SVENLLYVKEDL  PHQ SFYELI+NKA GKSGPLFHFDVHEDVRTI DATIEKDESHAGKVV  HWYEKNKH FP SRWEI+DPTKKW RY +HGD
Sbjct:  169 EAEEQAERERLKKQWLREQEQIKNEPLEITYSYWDGTGHRRVIQVRKGDPIGNFLRAVQQQLAPDFREIRTASVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTVHGD 337          
BLAST of DY305850 vs. ExPASy Swiss-Prot
Match: FA50A_HUMAN (Protein FAM50A OS=Homo sapiens GN=FAM50A PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.139e-45
Identity = 85/166 (51.20%), Postives = 112/166 (67.47%), Query Frame = -1
Query:  231 EAGEQFVGERLQGQGFCEREKLERSPSNSLIVYWGGAGHGGVIQVRRGDTMGEFFRAVQQQLAPEFREFRTTSVENLLYVKEDLFFPHQPSFYELIVNKAGGKSGPLFHFDVHEDVRTIVDATIEKDESHAGKVVGGHWYEKNKHFFPVSRWEIFDPTKKWGRYPI 728
            E  E  + E L+ +   ++EK++         YW G+GH   +++R+G+TM +F +   + L  +F E R+  VE L+Y+KEDL  PH  SFY+ IV KA GKSGPLF+FDVH+DVR + DAT+EKDESHAGKVV   WYEKNKH FP SRWE +DP KKW +Y I
Sbjct:  173 EEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMRKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTI 338          
BLAST of DY305850 vs. ExPASy Swiss-Prot
Match: FA50A_MOUSE (Protein FAM50A OS=Mus musculus GN=Fam50a PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.537e-45
Identity = 84/166 (50.60%), Postives = 112/166 (67.47%), Query Frame = -1
Query:  231 EAGEQFVGERLQGQGFCEREKLERSPSNSLIVYWGGAGHGGVIQVRRGDTMGEFFRAVQQQLAPEFREFRTTSVENLLYVKEDLFFPHQPSFYELIVNKAGGKSGPLFHFDVHEDVRTIVDATIEKDESHAGKVVGGHWYEKNKHFFPVSRWEIFDPTKKWGRYPI 728
            E  E  + E L+ +   ++EK++         YW G+GH   +++++G+TM +F +   + L  +F E R+  VE L+Y+KEDL  PH  SFY+ IV KA GKSGPLF+FDVH+DVR + DAT+EKDESHAGKVV   WYEKNKH FP SRWE +DP KKW +Y I
Sbjct:  173 EEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTI 338          
BLAST of DY305850 vs. ExPASy Swiss-Prot
Match: FA50B_MOUSE (Protein FAM50B OS=Mus musculus GN=Fam50b PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 5.653e-45
Identity = 87/166 (52.41%), Postives = 109/166 (65.66%), Query Frame = -1
Query:  231 EAGEQFVGERLQGQGFCEREKLERSPSNSLIVYWGGAGHGGVIQVRRGDTMGEFFRAVQQQLAPEFREFRTTSVENLLYVKEDLFFPHQPSFYELIVNKAGGKSGPLFHFDVHEDVRTIVDATIEKDESHAGKVVGGHWYEKNKHFFPVSRWEIFDPTKKWGRYPI 728
            E  E  + E L+ +   +REK++         YW G+GH   +++ +G T+ +F +   Q L  +FRE R   VE L+YVKEDL  PH  +FY+ IV KA GKSGPLF FDVH+DVR + DAT+EKDESHAGKVV   WYEKNKH FP SRWE +DP KKW RY I
Sbjct:  168 EEEENRLREELRQEWEAKREKVKGEEVEITFSYWDGSGHRRTVRMSKGSTVQQFLKRALQGLRRDFRELRAAGVEQLMYVKEDLILPHYHTFYDFIVAKARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDRYTI 333          
BLAST of DY305850 vs. ExPASy Swiss-Prot
Match: F50AA_XENLA (Protein FAM50A-A OS=Xenopus laevis GN=fam50a-A PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 9.642e-45
Identity = 83/166 (50.00%), Postives = 112/166 (67.47%), Query Frame = -1
Query:  231 EAGEQFVGERLQGQGFCEREKLERSPSNSLIVYWGGAGHGGVIQVRRGDTMGEFFRAVQQQLAPEFREFRTTSVENLLYVKEDLFFPHQPSFYELIVNKAGGKSGPLFHFDVHEDVRTIVDATIEKDESHAGKVVGGHWYEKNKHFFPVSRWEIFDPTKKWGRYPI 728
            E  E  + E L+ +   ++EK++         YW G+GH   +++++G+++ +F +   + L  +F E R+  VE L+Y+KEDL  PH  SFY+ IV KA GKSGPLF+FDVHEDVR + DAT+EKDESHAGKVV   WYEKNKH FP SRWE +DP KKW +Y I
Sbjct:  174 EEEENRLREELRQEWEHKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNSIQQFLQKALESLRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHEDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTI 339          
BLAST of DY305850 vs. ExPASy Swiss-Prot
Match: FA50B_HUMAN (Protein FAM50B OS=Homo sapiens GN=FAM50B PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.259e-44
Identity = 83/166 (50.00%), Postives = 111/166 (66.87%), Query Frame = -1
Query:  231 EAGEQFVGERLQGQGFCEREKLERSPSNSLIVYWGGAGHGGVIQVRRGDTMGEFFRAVQQQLAPEFREFRTTSVENLLYVKEDLFFPHQPSFYELIVNKAGGKSGPLFHFDVHEDVRTIVDATIEKDESHAGKVVGGHWYEKNKHFFPVSRWEIFDPTKKWGRYPI 728
            E  E  + E L+ +   +REK++         YW G+GH   ++VR+G+T+ +F +   Q L  +F E R+  VE L+++KEDL  PH  +FY+ I+ +A GKSGPLF FDVH+DVR + DAT+EKDESHAGKVV   WYEKNKH FP SRWE +DP KKW +Y I
Sbjct:  159 EEEENRLREELRQEWEAQREKVKDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRKDFLELRSAGVEQLMFIKEDLILPHYHTFYDFIIARARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRWEAYDPEKKWDKYTI 324          
BLAST of DY305850 vs. ExPASy Swiss-Prot
Match: FA50A_DANRE (Protein FAM50A OS=Danio rerio GN=fam50a PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.259e-44
Identity = 82/166 (49.40%), Postives = 113/166 (68.07%), Query Frame = -1
Query:  231 EAGEQFVGERLQGQGFCEREKLERSPSNSLIVYWGGAGHGGVIQVRRGDTMGEFFRAVQQQLAPEFREFRTTSVENLLYVKEDLFFPHQPSFYELIVNKAGGKSGPLFHFDVHEDVRTIVDATIEKDESHAGKVVGGHWYEKNKHFFPVSRWEIFDPTKKWGRYPI 728
            E  E  + E L+ +   ++EK++         YW G+GH   +++++G+T+ +F +   + L  +F E R+  VE+L+Y+KEDL  PH  SFY+ IV KA GKSGPLF+FDVH+D+R + DAT+EKDESHAGKVV   WYEKNKH FP SRWE +DP KKW +Y I
Sbjct:  175 EEEENRLREELRQEWERKQEKIKSEEIEITFSYWDGSGHRKTVKMKKGNTIQQFLQRALEVLRKDFSELRSAGVEHLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDIRLVNDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTI 340          
BLAST of DY305850 vs. ExPASy Swiss-Prot
Match: FA50A_XENTR (Protein FAM50A OS=Xenopus tropicalis GN=fam50a PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 2.148e-44
Identity = 83/166 (50.00%), Postives = 112/166 (67.47%), Query Frame = -1
Query:  231 EAGEQFVGERLQGQGFCEREKLERSPSNSLIVYWGGAGHGGVIQVRRGDTMGEFFRAVQQQLAPEFREFRTTSVENLLYVKEDLFFPHQPSFYELIVNKAGGKSGPLFHFDVHEDVRTIVDATIEKDESHAGKVVGGHWYEKNKHFFPVSRWEIFDPTKKWGRYPI 728
            E  E  + E L+ +   ++EK++         YW G+GH   +++++G+++ +F +   + L  +F E R+  VE L+Y+KEDL  PH  SFY+ IV KA GKSGPLF+FDVHEDVR + DAT+EKDESHAGKVV   WYEKNKH FP SRWE +DP KKW +Y I
Sbjct:  184 EEEENRLREELRQEWERKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNSIQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHEDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTI 349          
The following BLAST results are available for this feature:
BLAST of DY305850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
XCT_ORYSJ1.383e-6773.96Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa ... [more]
XCT_ORYSI1.383e-6773.96Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa ... [more]
XCT_ARATH3.080e-6772.19Protein XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis t... [more]
FA50A_HUMAN1.139e-4551.20Protein FAM50A OS=Homo sapiens GN=FAM50A PE=1 SV=2[more]
FA50A_MOUSE2.537e-4550.60Protein FAM50A OS=Mus musculus GN=Fam50a PE=2 SV=1[more]
FA50B_MOUSE5.653e-4552.41Protein FAM50B OS=Mus musculus GN=Fam50b PE=2 SV=1[more]
F50AA_XENLA9.642e-4550.00Protein FAM50A-A OS=Xenopus laevis GN=fam50a-A PE=... [more]
FA50B_HUMAN1.259e-4450.00Protein FAM50B OS=Homo sapiens GN=FAM50B PE=2 SV=1[more]
FA50A_DANRE1.259e-4449.40Protein FAM50A OS=Danio rerio GN=fam50a PE=2 SV=1[more]
FA50A_XENTR2.148e-4450.00Protein FAM50A OS=Xenopus tropicalis GN=fam50a PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CD03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305850 ID=DY305850; Name=DY305850; organism=Citrus sinensis; type=EST; length=1253bp
GGCGGAAAAAGAAACCCAAGTGGGAATTGGATTAAAAGTCACTTACTTTC
CATGACCATATTCTATCGTAAATGGACTTCAAAATACAAAATGCAGGCCT
TCCAATCCAAAAATGGGAGAAAAAGCTTTCAAAAGTGCCCACAAAGTTCA
AGAATTAACTACTTGCAGTAAACAAATCAAACTGGTTCAAAAAAATTTAT
TTGCCCCAGCCCGACTGATCAATCCCCATGGATGGGGTATCGCCCCCATT
TCTTCGTTGGGTCAAAAATCTCCCATCGAGAAACAGGGAAAAAATGCTTG
TTCTTCTCATACCAGTGCCCCCCCACAACTTTCCCAGCATGGGACTCATC
TTTTTCTATAGTTGCATCAACAATCGTCCGTACATCCTCGTGAACATCAA
AGTGAAAAAGCGGTCCACTTTTTCCCCCGGCTTTGTTAACAATAAGCTCA
TAAAAACTGGGTTGATGAGGGAAGAAAAGATCTTCCTTAACATAAAGCAA
ATTTTCCACTGACGTCGTTCGGAATTCCCGAAACTCAGGTGCAAGTTGTT
GTTGAACAGCCCGAAAAAACTCTCCCATTGTATCACCCCTCCGAACCTGG
ATAACTCCTCCATGGCCTGCTCCACCCCAATAAACTATAAGTGAATTGGA
GGGGCTCCTTTCCAATTTCTCCCGCTCACAAAACCCCTGGCCCTGCAACC
GTTCACCCACAAATTGCTCCCCTGCCTCTCCCCCCACGGGCAGGGAAAAA
GCTAGACCCCCCCCGTGGGAACTTTTCCCCATTTTCCCTGGGCAAACCCC
CCTTGTTTTCAAATTTTCAATTTCCCCCATCCCCCCCTCCATTTCCCCCC
CCAAAACCACCAACAAAGGGAAAACCCAAAAATTCCCCTAAACCTTTCCC
TTTTTTACCCTTTTTCCAAATTGCCCCCCCCCCCCCCCCCCTGGGAAGAA
ACTATCGAAAACCCCCCCGCTTTTTCTCCCCCCTCCACCTCCTGGTTCCC
AAAAAAATAACCCCCCTCCTCCCACCGGAGTTCCCCCTCCGGGGGGGAAA
AAAACCCCCACGGGGTTTCCCCTTTCTAAAGCCCGAGGTTTCTTAAAAAC
CCCCCGAGAGGAGATTTTGGAAACCCCCACCGGGGGGAAGAAGAAACCCG
CGGGGGCGCGCCCCCCCTTTATGCCAAAAAAAAGAAGAAAAAACCCTCTT
TTTTTTAAGAAACTCCACTCCCGAAGAAAATTTTTTTAGTAGAGAACCAC
CCC
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