EY702670

Overview
NameEY702670
Unique NameEY702670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702670_ssr245 microsatellite EY702670_ssr245:245..256. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702670 vs. ExPASy Swiss-Prot
Match: PAP4_ARATH (Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.395e-34
Identity = 90/190 (47.37%), Postives = 118/190 (62.11%), Query Frame = 1
Query:  235 RASVSFFPAFLNKGKDA---KVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFFKIG*KLPSNQCGHT*GRKIWNL-------GLSSTQLQQN*HL*IPRRWLVNLDYSKIGSLIPVKAPITARGELETTYFGMRFSDPQRDKSNLFLLEM 774
            +A  SF PAFL +   A   K LK+ELLEAI PL+RGA A+P+DQ R++Q+ARK+E VNPTKEPLKSDL+NGKWELIYTTS SILQ ++PRF +    + + Q  +    K+ N+        ++      N      ++  V L   KI   IP+KAP +ARGELE TY        + DK NLF+L+M
Sbjct:   52 QAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLR---SITNYQSINVDTLKVQNMETWPFYNSVTGDIKPLN-----SKKVAVKLQVFKILGFIPIKAPDSARGELEITYVDEELRLSRGDKGNLFILKM 233          
BLAST of EY702670 vs. ExPASy Swiss-Prot
Match: PAP5_ARATH (Probable plastid-lipid-associated protein 5, chloroplastic OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.144e-28
Identity = 82/186 (44.09%), Postives = 108/186 (58.06%), Query Frame = 1
Query:  241 SVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFFKIG*KLPSNQCGHT*GRKIWNL-------GLSSTQLQQN*HL*IPRRWLVNLDYSKIGSLIPVKAPI-TARGELETTYFGMRFSDPQRDKSNLFLLEM 774
            +V  FP      +  K LK EL+EAI PL+RGA A+P+DQ  ++Q+ARK+E VNPTKEPLKSDL+NGKWELIYTTS +ILQ ++PRF +    L + QC +    K+  +        ++      N      +   V L   KI   IPVKAP  TARGELE TY        +   + LF+L+M
Sbjct:   48 AVFSFPPRNGGAEKRKQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLR---SLTNYQCINMDTLKVQRMETWPFYNSVTGDLTPLN-----SKTVAVKLQVFKILGFIPVKAPDGTARGELEITYVDEELRISRGKGNLLFILKM 225          
The following BLAST results are available for this feature:
BLAST of EY702670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PAP4_ARATH1.395e-3447.37Probable plastid-lipid-associated protein 4, chlor... [more]
PAP5_ARATH1.144e-2844.09Probable plastid-lipid-associated protein 5, chlor... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-010-H01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702670 ID=EY702670; Name=EY702670; organism=Citrus sinensis; type=EST; length=960bp
CCNNNAACATGGTAGCCTGCAGTACCGTGTCCGGATTCCCGTTCCGACCA
CGCGTCCGCTCTTTGTCTACTCTCTGCTACTGTCCTCAGTGGCTCTCAAT
TTTCAACCCCACAATTACTCTTCCCTCCTAGGGTTTCTTTCTCTTACTTC
CCCACTAAGCTTAACAACAATTACCAAAACAACCGCAACCTCTCAAGCAG
TGAATATTATCATTCTTCGGCTTCTCAAAAATGGAGAGCCAGTGTTTCTT
TCTTTCCTGCGTTCTTGAACAAAGGGAAAGACGCTAAGGTTCTCAAAGAA
GAGCTCCTCGAGGCCATTGCCCCTCTTGATCGTGGCGCCGAGGCCACTCC
TGAAGACCAGCAGAGAGTCGAACAGATAGCACGGAAACTTGAAGGAGTGA
ATCCAACAAAGGAGCCACTCAAGTCTGACTTGCTAAATGGAAAGTGGGAG
CTTATATACACGACTTCACAATCAATTTTGCAGACCCAGAGGCCCAGATT
TTTTAAGATCGGGTAGAAACTACCAAGCAATCAATGTGGACACACTTAGG
GGCGCAAAATATGGAATCTGGGCCTTTCTTCAACCCAGTTACAGCAGAAT
TGACACCTCTGAATTCCAAGAAGGTGGCTTGTCAATTTGGACTATTCCAA
AATTGGAAGTCTGATACCAGTTAAAGCTCCCATAACGGCTCGTGGTGAAT
TGGAAACTACATATTTTGGAATGAGATTTTCGGATCCTCAAAGGGATAAA
AGCAACTTATTCCTCTTGGAAATGGGTGGATCCCTCTTAACAAAGGCCTA
CCCGAAAGAATCAATTTAAAACCTGGATTTTAAGGAAAGCGAATTAACAT
TTCTTGACATATAAAAAGCCTCCAAAAAGCTCCGTTAAAAAAAATTGGAA
ATTCCTAAAAATCTTCCTTGGATAAAAGTTTCTTTTGAGGGGCCTACATT
TAAACAGGGC
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