DY305834

Overview
NameDY305834
Unique NameDY305834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6758 contig Csv1_Contig6758:1..1254. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY305834 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 1.737e-86
Identity = 166/186 (89.25%), Postives = 178/186 (95.70%), Query Frame = 2 
Query:    2 AIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVPPASLITHNA 559
            AIKAPGFGERRKALLQDIAI+TGAEFQA DLGLL+ENT++EQLG ARKVTI KDSTTIIADAASKDE+Q+R+AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG ALVHLS +VPAIK+KLEDADERLGADIVQKALV PA+LI  NA
Sbjct:  320 AIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTTIEQLGLARKVTISKDSTTIIADAASKDELQSRVAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNA 505
[Close]
BLAST of DY305834 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 2.123e-84
Identity = 167/186 (89.78%), Postives = 175/186 (94.09%), Query Frame = 2 
Query:    2 AIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVPPASLITHNA 559
            AIKAPGFGERRKALLQDIAI+TGAEFQA DLGLL+ENTSVEQLG ARKVTI KDSTT+IADAASKDE+QARIAQLK+ELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  VPAI  + +DADERLGADI+QKALV PASLI  NA
Sbjct:  262 AIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGIARKVTITKDSTTLIADAASKDELQARIAQLKRELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVVPAINGEDKDADERLGADILQKALVAPASLIAQNA 447
[Close]
BLAST of DY305834 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 1.054e-83
Identity = 160/186 (86.02%), Postives = 177/186 (95.16%), Query Frame = 2 
Query:    2 AIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVPPASLITHNA 559
            A+KAPGFGERRKA+LQDIAI+TGAE+QA D+GLL+ENT+++QLG ARKVTI KDSTT+IADAASKDE+QARI+QLKKEL+ETDSVYDSEKLAERIAKL+GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  +PAIK+KLEDADERLGADIVQKALV PA+LI  NA
Sbjct:  279 AVKAPGFGERRKAMLQDIAILTGAEYQALDMGLLVENTTIDQLGIARKVTISKDSTTLIADAASKDELQARISQLKKELSETDSVYDSEKLAERIAKLAGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNA 464
[Close]
BLAST of DY305834 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 4.895e-81
Identity = 157/186 (84.41%), Postives = 172/186 (92.47%), Query Frame = 2 
Query:    2 AIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVPPASLITHNA 559
            A+KAPGFGERRKA+LQDIAI+TGAE+ A D+ LL+EN +++QLG ARKVTI KDSTT+IADAASKDE+QARIAQLKKEL ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  +PAIK+  EDADERLGADIVQKAL+ PA+LI  NA
Sbjct:  319 AVKAPGFGERRKAMLQDIAILTGAEYLAMDMSLLVENATIDQLGIARKVTISKDSTTLIADAASKDELQARIAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNA 504
[Close]
BLAST of DY305834 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 5.412e-80
Identity = 154/186 (82.80%), Postives = 172/186 (92.47%), Query Frame = 2 
Query:    2 AIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVPPASLITHNA 559
            AIKAP FGERRKA+LQDIAIVTGAE+ A DLGLL+EN +V+QLGTARK+TI + +TT+IADAASKDEIQAR+AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGA TETELEDR+LRIEDAKNATFAAIEEGIVPGGGAA VHLS +VPAIK+ +ED DERLGADI+QKAL  PASLI +NA
Sbjct:  275 AIKAPSFGERRKAVLQDIAIVTGAEYLAKDLGLLVENATVDQLGTARKITIHQTTTTLIADAASKDEIQARVAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGATTETELEDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNA 460
[Close]
BLAST of DY305834 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 1.168e-74
Identity = 147/186 (79.03%), Postives = 164/186 (88.17%), Query Frame = 2 
Query:    2 AIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVPPASLITHNA 559
            AIKAPGFGERRK+LLQDIAIVTGAEF A DLG+ +E   VEQLG ARKVT+  ++TT+IADAASKDEI+ RIAQLKKELAETDSVYD+EKL+ERIAKLSGGVAVIKVGAATE ELEDRKLRIEDAKNATFAA+EEGIVPGGGAAL+HLS+ VPA K+ L DA+E+LGADIV K+L  P  LI  NA
Sbjct:  308 AIKAPGFGERRKSLLQDIAIVTGAEFIAKDLGMKVEQAVVEQLGVARKVTVANNTTTLIADAASKDEIEMRIAQLKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDRKLRIEDAKNATFAAVEEGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRLIADNA 493
[Close]
BLAST of DY305834 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 3.757e-73
Identity = 151/186 (81.18%), Postives = 164/186 (88.17%), Query Frame = 2 
Query:    2 AIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVPPASLITHNA 559
            A+KAPGFGERRKA+LQDIAI+T     A D+GLL+ENT+++QLG ARKVTI KDSTT+IADAASK E+QARI+QLKKE  ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  +PAIK+  EDAD RLGADIVQKALV   SLI  NA
Sbjct:  318 AVKAPGFGERRKAMLQDIAILTEPS-TALDMGLLVENTTIDQLGIARKVTISKDSTTLIADAASKAELQARISQLKKESFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALV-AQSLIAQNA 501
[Close]
BLAST of DY305834 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 8.983e-59
Identity = 114/186 (61.29%), Postives = 149/186 (80.11%), Query Frame = 2 
Query:    2 AIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVPPASLITHNA 559
            A+KAP FG+RRKA+L+DIAI+TG +  + D+G+ +EN +++ +G ARK+T+ KD TTI+ D ++K  ++ R+AQ++K+L  TDS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGGA L+HLS  +PA K  L +A+E++GADIV +AL  P   I HNA
Sbjct:  274 AVKAPAFGDRRKAMLEDIAILTGGQLISEDIGIKLENVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKANL-NAEEQVGADIVCRALQAPLYQIAHNA 458
[Close]
BLAST of DY305834 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.001e-58
Identity = 111/186 (59.68%), Postives = 149/186 (80.11%), Query Frame = 2 
Query:    2 AIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVPPASLITHNA 559
            A+KAPGFG+RRKA+LQDIAI+TG +  + ++GL +E   ++ +G  RK++I KD+TTI+AD  + +E++ RIAQ++K+L E+DS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGG  L+HLS  V  +K  L + +E++GADIV++AL  P + I +N+
Sbjct:  273 AVKAPGFGDRRKAMLQDIAILTGGQLISEEVGLSLEMVDLDMMGIGRKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNS 458
[Close]
BLAST of DY305834 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 5.823e-58
Identity = 112/186 (60.22%), Postives = 149/186 (80.11%), Query Frame = 2 
Query:    2 AIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVPPASLITHNA 559
            A+KAP FG+RRKA+L+DIAI+TG +  + D+G+ ++  +++ +G ARK+T+ KD TTI+ D ++K  ++ R+AQ++K+L  TDS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGGA L+HLS  +PA K KL +A+E++GA+IV +AL  P   I HNA
Sbjct:  274 AVKAPAFGDRRKAMLEDIAILTGGQLISEDVGIKLDKVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKAKL-NAEEQVGAEIVYRALQAPLFQIAHNA 458
The following BLAST results are available for this feature:
BLAST of DY305834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_PEA1.737e-8689.25RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO2.123e-8489.78RuBisCO large subunit-binding protein subunit alph... [more]
RUB1_BRANA1.054e-8386.02RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH4.895e-8184.41RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT5.412e-8082.80RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE1.168e-7479.03RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA3.757e-7381.18RuBisCO large subunit-binding protein subunit alph... [more]
CH601_SYNJA8.983e-5961.2960 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH601_TRIEI2.001e-5859.6860 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH602_SYNJB5.823e-5860.2260 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CB03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305834 ID=DY305834; Name=DY305834; organism=Citrus sinensis; type=EST; length=1254bp
GGCCATTAAAGCTCCTGGTTTTGGCGAAAGAAGAAAAGCTCTCCTTCAAG
ATATTGCCATTGTGACTGGAGCTGAGTTTCAAGCTGGAGACCTGGGCTTG
CTTATTGAAAACACTTCAGTTGAGCAGCTAGGTACAGCTAGAAAGGTGAC
CATCAGAAAGGACTCCACTACCATTATTGCTGATGCTGCATCAAAGGATG
AAATACAAGCTAGAATTGCACAGCTGAAAAAGGAGTTGGCTGAGACGGAT
TCTGTTTATGACTCAGAGAAACTTGCTGAGAGAATTGCTAAATTGTCTGG
CGGGGTTGCTGTTATTAAAGTTGGAGCTGCCACAGAAACTGAGCTTGAGG
ACCGTAAACTCCGTATTGAAGATGCCAAGAATGCAACTTTTGCAGCCATA
GAGGAAGGTATTGTTCCTGGTGGTGGTGCTGCTCTGGTTCATCTGTCTGA
TCATGTTCCTGCTATCAAGGACAAGCTTGAAGATGCAGATGAGCGATTAG
GTGCTGACATTGTGCAGAAGGCACTGGTACCACCTGCATCACTGATAACT
CACAATGCTGGAGTTGAAGGTGAGGTTATTGTGGAAAACGGATAAGCTCT
AGAAGGGACGAATGTTTCGATTATGAAGCCAGTTGTTACGTACACTTGTT
CTAGCTAGAAAATAGTGATAACTGCGCNCCGCAAGCCTGCGCTAGAANGA
CTGATCGACCAAGTGTATATTGAATCACGGCGAAGGGGTATCGTCTTCCT
TTTCCCCTCGGGGTGGAGAACTGTAGTACGTGCTGAGGGGCCGGTCTTTA
AAATAAAAAAAAGATAAGNAGTAGTTTGGGGGTGGTGGCGAGGGGGTTCC
GGATGGAAGAAGGGGAGGACAGGTTGAAGAGAATAATGAATAAAGGAGGG
AGAACTGTGCTTAGTTGGGACAAAGATTACATTCGCGGTGGCCCGTCCTN
ATAAGTGATGTGGNAAGTCGCGGGGGGNCCNGGTGNTAGTATGACTAAAN
AGGGAGACGGAGAGCGANCGCGGCGCAGGTGGGGCGCCGGGGATGTTGAT
GAAACGATCTGCAAAAAATCCGCCTCAGCTGGGGCCGACTCGCTTTCTTT
ACCATNGAAGCGNANGACNTCACNCAGTGCTCTCTGGGACGCGAGGACGG
AGGGAGGAAGGCCTCTGAAGTGGCTCATGTAGGGAATTAATGATNAGGGA
ATGTTACAAAGAATGNNACGGCGGAGTGATGCGGTTTGTATCACGTCGCG
AGGG
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