DY305832

Overview
NameDY305832
Unique NameDY305832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1250
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY305832 vs. ExPASy Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.552e-13
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 3 
Query:  372 GNQMRKRYPYPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQV 509
            G++ R    YPVRPD++DC+FYM+TG+CK+GS+CKFNHPVRRK Q+
Sbjct:   89 GSEKRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPVRRKLQI 134
[Close]
BLAST of DY305832 vs. ExPASy Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.389e-11
Identity = 27/39 (69.23%), Postives = 35/39 (89.74%), Query Frame = 3 
Query:  399 YPVRPDAQDCTFYMKTGTCKFGSNCKFNHPVRRKNQVIK 515
            YPVRP A+DC+FYM+TG+CKFGS+CKFNHP+ RK Q+ +
Sbjct:  107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIAR 145
The following BLAST results are available for this feature:
BLAST of DY305832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H67_ARATH2.552e-1365.22Zinc finger CCCH domain-containing protein 67 OS=A... [more]
C3H43_ARATH2.389e-1169.23Zinc finger CCCH domain-containing protein 43 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2CA09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305832 ID=DY305832; Name=DY305832; organism=Citrus sinensis; type=EST; length=1250bp
TTTCGCTCTTTTGCAAAAGTAGGGTTTTGAAATGTGATAACAAAATGGAA
CTCTCTGAGCTAATTTCCGTACCAAATCTTAATCATGAAAAAACAAAATT
CGAATTAGGGTTACAATCTTCCTCTCCGAAATCCGATCTCGATCCTCCAC
CGTCCGATCTTGATTACACTGCAGGAATTGAGGAAGAGCTGCGAAATCTC
GATTTGAGAGAGGCGGAAGAGATAGATTCAATCAAAGCAGCGGAAATAGA
AATAGTAGTTGAAGAAGAAGACGAACAGGAAGAGGAAGAGGAAGAGGAAG
AAAGCGAGAGTGATGAAAACAATAAAAGTAACATTATAGTTCAGAATGAG
ATTCAAAATGAGAATGAGTATGGAAATCAAATGAGAAAAAGGTATCCCTA
TCCAGTGAGACCCGACGCTCAAGATTGTACTTTTTATATGAAAACAGGTA
CCTGCAAGTTTGGGTCCAATTGTAAGTTTAATCATCCTGTTCGTAGAAAA
AACCAGGTAATAAAAATTAAATTTTAAATTTACCCGATTAGTTTTTTTGC
TTTTGTTTGTTTATTTGTCATTGTTTCTGCTGAGAACAAGCTGAGTCTCT
ATGCTTGTGTGCATGTGAAGTGTGTGAGCAAAGTTAAGTGATTTTGAAAT
CGGGAAAAATGCATAATTGATTTATCTATGCTGAGATGTTCAGTTAGCTC
TTTTTTTTGTCTCCCTTTTGTTGGTTTCAAGTCTTCTACAGAGAAGGTGA
AGGACAGAGAGGAGCTGATTGAGAGGCCTGGCCAGAGCCAGAGCCAAGGC
CAGAGTGAGAGTCAAAGCCAGATAGAAATGCAAGTATTACCTTAGGACAG
GGAGGGTGTAAGTTCGGACAGGCTTGCAGATTTAATCACACCAAAGCAAA
ATCAACAGCTGCCCCAGTTTTAAAGCTCCATTTTTTGGGGTCTGCCCTAT
TCGACCCGGGTGGAAAGGGATTGCCCTTTATTACTTGCCCTAAGTGGTTC
CCGGCAAGGAATGGGGGCTAAATTGCAGGGTTTAATCCCCCCCTGATCCC
TACCGCCTGTTTGGGCGGGGCCCGAAACCCTCCCTTTCCGGGAAAATTGG
AAAAGGGGGTGGGAATTTCGTCCCCCCTCCCCCCCAACCCCCCCCCCCCC
CCAAACCCCACACAATTAAAAGGAGACATCCCCGGGGGCCCCCCCCCCCC
CCCCCAAAGGGGGGCCCCTTTTAATAAAAGAAGGAAAAACCCCGCCCCGC
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