DY305826

Overview
NameDY305826
Unique NameDY305826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1187
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305826_ssr53 microsatellite DY305826_ssr53:53..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9716 contig Csv1_Contig9716:105..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.439e-58
Identity = 123/158 (77.85%), Postives = 126/158 (79.75%), Query Frame = -3
Query:  319 KGGRRICFDLDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAPESLADPLPV 792
            KGGRRI FDLDYDEKDSSYNRIKSLVTEE KQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF RLKTK+IELQ           EGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE             V VLNGSSG PESL + L +
Sbjct:  765 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEALSI 922          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.982e-56
Identity = 121/159 (76.10%), Postives = 125/159 (78.62%), Query Frame = -3
Query:  319 KGGRRICFDLDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAPESLA-DPLPV 792
            KGGRRI FDLD DEKDSSYNRIKSLVTEE KQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF+RLK K+IELQ           EGYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE             VTVLNGSSG P   A +P+PV
Sbjct:  765 KGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV 923          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.253e-54
Identity = 119/159 (74.84%), Postives = 124/159 (77.99%), Query Frame = -3
Query:  316 KGGRRICFDLDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAPESLADPLPVV 792
            KGGRRI FDLD+DEKDSSYNRIKSLVTEE KQYFRPEFLNRL EMIVFRQLTKLEVKEIADIMLKEVF RLK K+IELQ           EGYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE             VTVLNG+SGAP   A P P++
Sbjct:  768 KGGRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRLSEMIVFRQLTKLEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSA-PEPIL 925          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 4.456e-52
Identity = 115/162 (70.99%), Postives = 123/162 (75.93%), Query Frame = -3
Query:  319 KGGRRICFDLDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAP----ESLADPLPV 792
            KGGRRI FDLDY EKDSSYNRIKSLVT+E KQYFRPEFLNRLDEMI+FRQLTKLEVKEIADI+L+E+F+RLK K++ELQ           EGYNPSYGARPLRRAIMRLLEDSM EKMLAREIKE             VTVLNG SG P    E   D LPV
Sbjct:  713 KGGRRIGFDLDY-EKDSSYNRIKSLVTQELKQYFRPEFLNRLDEMILFRQLTKLEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLPV 873          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 6.906e-37
Identity = 83/144 (57.64%), Postives = 102/144 (70.83%), Query Frame = -3
Query:  361 KGGRRICFDLDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNG 792
            KGG  + F+L  D+ +S Y R++SLV EE KQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L            EGYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK              VTVL G
Sbjct:  671 KGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVDVTNEGEVTVLLG 814          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.020e-37
Identity = 78/124 (62.90%), Postives = 97/124 (78.23%), Query Frame = -3
Query:  421 KGGRRICFDLDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 792
            KGG  + F+L  D+ +S Y R++SLV EE KQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L            EGYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK
Sbjct:  671 KGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIK 794          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.178e-36
Identity = 80/125 (64.00%), Postives = 95/125 (76.00%), Query Frame = -3
Query:  418 KGGRRICFDLDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 792
            KGG  + FDL  D+ +S Y RIK+LV EE KQYFRPEFLNRLDE+IVFRQLTK EV EIA+IMLKEVF R+  K I+L+           EGYNP YGARPLRRA+MRLLED+++E+ LA +IKE
Sbjct:  668 KGGGGLGFDLSEDQTESQYGRIKALVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVGEIAEIMLKEVFTRISEKGIQLEVTARFKTHLINEGYNPIYGARPLRRAVMRLLEDTLSEEFLAEKIKE 792          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.632e-33
Identity = 72/125 (57.60%), Postives = 98/125 (78.40%), Query Frame = -3
Query:  418 KGGRRICFDLDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 792
            K G  + F+L+ + ++  Y+R+++LV EE KQYFRPEFLNR+DE+IVFRQLTK EV++IA IML+E+F+R+K + I LQ           EGYNPSYGARPLRRA++RLLEDS+AE++L+ +IKE
Sbjct:  701 KKGGGLGFELEENIEELQYSRMRNLVNEELKQYFRPEFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKE 825          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.494e-23
Identity = 59/144 (40.97%), Postives = 90/144 (62.50%), Query Frame = -3
Query:  421 FQSQMI*IPYVVPRAEFARGKGGRRICFDLDYDEKDSSYNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 852
            F++ +I +   V     A+G+ G  I F LD DE+ +SY  +K+LV EE K YFRPE LNR+DE+++FRQL K ++ EI ++ML+++  RL    + L+           +GY+P+YGARPLRR +  ++ED ++E  LA   K
Sbjct:  768 FKNALIIMTSNVGSLAIAKGRHGS-IGFILDDDEEAASYTGMKALVVEELKNYFRPELLNRIDEIVIFRQLEKAQMMEILNLMLQDLKSRLVALGVGLEVSEPVKELICKQGYDPAYGARPLRRTVTEIVEDPLSEAFLAGSFK 910          
BLAST of DY305826 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.676e-23
Identity = 53/110 (48.18%), Postives = 80/110 (72.73%), Query Frame = -3
Query:  424 KDSS-YNRIKSLVTEEXKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 750
            KDS+ + ++  LV EE K++FRPEFLNR+DE+IVF  LTK ++ EI  +M+K++  RL+ K++ L+           EGY+P YGARPLRRA+MRLLED++A++ L++ +
Sbjct:  715 KDSALFEKVTELVNEELKEFFRPEFLNRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVYGARPLRRAVMRLLEDTLAQQCLSKPL 824          
The following BLAST results are available for this feature:
BLAST of DY305826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPC_PEA2.439e-5877.85ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC2.982e-5676.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC1.253e-5474.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA4.456e-5270.99ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE6.906e-3757.64ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU9.020e-3762.90ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH1.178e-3664.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA4.632e-3357.60ATP-dependent Clp protease ATP-binding subunit clp... [more]
ERD1_ARATH1.494e-2340.97ERD1 protein, chloroplastic OS=Arabidopsis thalian... [more]
CLPC_ODOSI5.676e-2348.18ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CA03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305826 ID=DY305826; Name=DY305826; organism=Citrus sinensis; type=EST; length=1187bp
ATCATTCAAATCCTTCTCTGATTAAGAAGAAAGCAAATAATGATGAGAAC
TGAATAATAATAATAATAACAATATGAAACCTAACACTAGCAACTGACTG
CAACTTTCCCACTATCTGCTGCTACTGAACTGAACCGTGTACTCTATTTT
CATATGGTGTCACGAATACAGCCTTAAAACCCAACCACCACCGATTTAAT
CAACAGCTTCCAAATCTACTGCCAAGTAGTCCTTCCAAGAAAACAGACTG
AGTATCTAGCCAGTTGAAATCAAAATGGAAGTACAAACAACATCTCAAAA
TAGATGATCAGTTTACACAACAGGTAGTGGATCTGCCAATGATTCTGGAG
CACCACTGCTGCCGTTGAGCACAGTCACGTTCCCATCAGAATCGACATCA
ACGATGACCGAATCACCCTCTTTGATCTCTCTTGCAAGCATCTTCTCAGC
CATGCTGTCTTCCAAAAGTCTCATAATGGCTCTTCTCAATGGCCTTGCTC
CATAGCTTGGGTTATAACCTTCCTCAACCACCCTCTCCCTAAATCTCTCT
GTCACTTGAAGCTCAATATCTTTTGTCTTGAGTCTATCAAACACCTCCTT
CAGCATTATATCAGCGATCTCTTTAACCTCCAGCTTGGTGAGTTGTCGGA
AAACAATCATCTCATCCAATCTATTCAAGAACTCTGGCCTGAAGTACTGC
TTNCATTCCTCAGTTACCAGACTCTTAATCCTGTTGTAACTGCTGTCTTT
CTCATCATAATCAAGATCAAAACAAATGCGGCGTCCTCCCTTCCCTCGTG
CGAATTCGGCACGAGGGACAACATATGGGATTTAAATCATTTGGGACTGA
AAAATACATCAAGGGAGACGAAATTAAAACTCCCGAACTGGATCTCCAAA
TTATCCTAATTCGGGAGGCCAACATTTAAATCCAACTAAAAAAAACCGAA
CAAAATTACTGAAAAAAATTCTGTCCCTTTTTCCGTTAAAAAATCCAAAA
TTTGGGGGAACCCCATTGAATGGGGGGAAAAATTTTTTGGGGCCCAAAAA
CCAAATTTTTAAATTCTTTTTACGGGGGAATGTCCCCCGGGGGAAATAAA
GGGAATTTTTTGTGGTTGGTTTTTTTTTTAAAAAATAAAAAAAGGGGGGA
ATAATTTTTTTTTTTTTTCCTTTTTCTTTTCTAACCC
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