DY305812

Overview
NameDY305812
Unique NameDY305812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1257
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305812 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 1.138e-61
Identity = 131/242 (54.13%), Postives = 166/242 (68.60%), Query Frame = 2
Query:    2 NFENSAHSRELMPKSAMVQDQEAGKSKD--CKLFGIPLFSNHVMPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSEHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQPL-PLASNAEN 718
            N +  A +RE + K      +E  KS++  C+LFGIPL +N    +  +S RN +N+ AG    Q  + +    S+ SK SK  +D++   E  +P Q +  H KD ++KT   S+RSCTKV KQGIALGRSVDLSKF NY+EL+AELD+LFEF+GELMAPKK+WLIVYTD+E DMMLVGDDPWQEFC MVRKIFIYTKEEV KMN  +LS + E+  + GEG DAK+ K    P  S+A N
Sbjct:  624 NAQAQAQAREQVTKQPFTIQEETAKSREGNCRLFGIPLTNNMNGTDSTMSQRNNLNDAAGLT--QIASPKVQDLSDQSKGSKSTNDHR---EQGRPFQTNNPHPKDAQTKTN--SSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNPGTLSCRSEEEAVVGEGSDAKDAKSASNPSLSSAGN 858          
BLAST of DY305812 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.225e-49
Identity = 112/245 (45.71%), Postives = 152/245 (62.04%), Query Frame = 2
Query:    2 NFENSAHSRELMPKSAMVQ-DQEAGKSKDCKLFGIPLFS-----NHVMPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSEHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQPLPLASNAEN 718
            +F      R + P +++   + E  +    K+FG  + +     NH+      +H   +  P+     Q +  ++D   E S S+          E+EK  Q +Q  +KDV+SKTQ  STRSCTKV KQG+ALGRSVDLSKF+NYDEL AELD++FEFDGEL++  KNW IVYTD+EGDMMLVGDDPW+EFC +VRKI+IYTKEEV KMNS S + + +DS  N +G         LP+ + ++N
Sbjct:  579 SFARPEQPRVIRPHASIAPVELEKTEGSGFKIFGFKVDTTNAPNNHLSSPMAATHEPMLQTPSSL--NQLQPVQTDCIPEVSVSTA-----GTATENEKSGQQAQQSSKDVQSKTQVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDDSSENEKG--------HLPMPNKSDN 808          
BLAST of DY305812 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 4.957e-49
Identity = 115/221 (52.04%), Postives = 145/221 (65.61%), Query Frame = 2
Query:    2 NFENSAH----SRELMPKSAMVQDQEAGKSK--DCKLFGIPLFSNHVMPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSEHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDS 646
            + E S+H    S  L+    +V D    K+K   C LFGI L S    PE ++S  +   +  G L Q   A E D+ S+ SK+ K  D  Q  +  EK  Q     TK+++SK Q GS+RSC KV KQGIALGRS+DL+KF  YDELIAELDQ+F+F+GEL +  KNW++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV KMN  +L+S+ EDS
Sbjct:  599 HIEPSSHIDDASSSLIKPQPLVIDHNVQKAKGSSCMLFGISLDSP-AKPELLISPPSVAFD--GKLQQD--ALEEDECSDPSKTVKPLDGAQHDSAREK-HQSCPDGTKNIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNPGALNSRSEDS 813          
BLAST of DY305812 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 1.104e-48
Identity = 116/240 (48.33%), Postives = 151/240 (62.92%), Query Frame = 2
Query:   26 RELMPKSAMVQ--DQEAGKSKDCKLFGI----PLFSNHVMPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSEHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNG--EGIDAKEVKQPLPLAS-NAEN 718
            R + PK  +V   D +  K   CKLFGI    P  S  +     V +  T   P     ++    E ++ S+ SK+ K  D  Q  +  EKPS  SQ  ++++  K+Q  STRSC KV KQGIALGRSVDL+KFN Y+ELIAELD +F+F+GEL  PKK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN  +L+S+ EDS  N    G   +E++  L  +S N+EN
Sbjct:  615 RLIKPKPLVVAHGDVQKAKGASCKLFGIHLDSPAKSEPLKSPSSVVYDGTPQTPGATEWRRPDVTEVEKCSDPSKAMKPLDTPQPDSVPEKPS--SQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852          
BLAST of DY305812 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.104e-48
Identity = 116/240 (48.33%), Postives = 151/240 (62.92%), Query Frame = 2
Query:   26 RELMPKSAMVQ--DQEAGKSKDCKLFGI----PLFSNHVMPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSEHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNG--EGIDAKEVKQPLPLAS-NAEN 718
            R + PK  +V   D +  K   CKLFGI    P  S  +     V +  T   P     ++    E ++ S+ SK+ K  D  Q  +  EKPS  SQ  ++++  K+Q  STRSC KV KQGIALGRSVDL+KFN Y+ELIAELD +F+F+GEL  PKK W++VYTD+EGDMMLVGDDPW EFC MV KIFIYT+EEV +MN  +L+S+ EDS  N    G   +E++  L  +S N+EN
Sbjct:  615 RLIKPKPLVVAHGDVQKAKGASCKLFGIHLDSPAKSEPLKSPSSVVYDGTPQTPGATEWRRPDVTEVEKCSDPSKAMKPLDTPQPDSVPEKPS--SQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHANSMERGSVGREMRGCLSTSSLNSEN 852          
BLAST of DY305812 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.920e-33
Identity = 90/223 (40.36%), Postives = 130/223 (58.30%), Query Frame = 2
Query:   53 VQDQEAGKSKDCKLFGIPLFSNHV-MPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSEHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQPLPLASNAEN 718
            V+ ++   + + +LFGI L S+ + +PE   +    +N     +D       SD KSE SK S+           EK  +P++   K+V+SK Q  STRS TKVQ QG+ +GR+VDL+    Y+ELI ++++LF+  GEL + +  W IV+TDDEGDMMLVGDDPW EFC MV++IFI++KEEV KM           +P N   +  +EV+  L   S  +N
Sbjct:  442 VEQKKPETTANYRLFGIDLMSSSLAVPEEKTAPMRPINISKPTMDSH-----SDPKSEISKVSE-----------EKKQEPAEGSPKEVQSK-QSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS-RNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKM-----------TPGNQLRMLLREVETTLTTTSKTDN 635          
BLAST of DY305812 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.569e-31
Identity = 82/228 (35.96%), Postives = 123/228 (53.95%), Query Frame = 2
Query:    8 ENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVVSHRNT-MNEPAGNLDQQFRAFESDQKSEHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQ 688
            E  A+S          + ++   S  C+LFGI + S      P+ +      ++PA ++D      ESDQ S+ S +          N+ + P+  S+    + +S+      RSCTKV  QG+A+GR+VDL++ + YD+L  +L+++F+  GEL A  K W +VYTDDE DMMLVGDDPW EFC MV++I+IYT EE  ++   S        P+ G+ I     KQ
Sbjct:  454 ETRANSYSASISKVPSEKKQEPSSAGCRLFGIEISSAVEATSPLAAVSGVGQDQPAASVDA-----ESDQLSQPSHA----------NKSDAPAASSEPSPHETQSR----QVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKS------KLPIIGDAIKPNPNKQ 656          
BLAST of DY305812 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.356e-30
Identity = 74/178 (41.57%), Postives = 102/178 (57.30%), Query Frame = 2
Query:   86 CKLFGIPLFSNHVMPEPVVSHRNTMNEPAGNLDQQFRAFESDQKSEHSKSSKLADDNQVFNEHEKPSQPSQTHTKDVRS--KTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMN 613
            C+LFG  L  N V  +   S  +     A +       F+S Q+SE              N+ + PS         +RS  ++Q    RSCTKV  QG A+GR++DL++   Y++L  +L+++F+  GEL+   K W +VYTDDE DMM+VGDDPW EFCGMVRKIFIYT EEV K++
Sbjct:  465 CRLFGFELVEN-VNVDECFSAASVSGAVAVDQPVPSNEFDSGQQSEPLN----------INQSDIPSGSGDPEKSSLRSPQESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631          
BLAST of DY305812 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 7.442e-29
Identity = 65/125 (52.00%), Postives = 87/125 (69.60%), Query Frame = 2
Query:  251 DNQVFNEHEKPSQPSQTHTKDVRSKTQCGSTRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSL 625
            D+ + +   K   P+ +++   + + Q  STRS  KVQ QG A+GR+VDL+   +YDELI EL+++FE +GEL +PK  W IV+TDDEGD MLVGDDPW EFC M +K+FIY  +EV KM S SL
Sbjct:  482 DSNISDSTTKCQDPNSSNSP--KEQKQQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGEL-SPKDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKSL 603          
BLAST of DY305812 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.824e-28
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = 2
Query:  338 STRSCTKVQKQGIALGRSVDLSKFNNYDELIAELDQLFEFDGELMAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS-VSLSSKGEDSPMNGEGID 670
            ++RS TKVQ QGIA+GR+VDL+   +YDELI EL+++FE  G+L+A  K W++V+TDDEGDMML GDDPW EFC M +KIFIY+ +EV KM + + +SS  E+     E  +
Sbjct:  487 TSRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLLARDK-WIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISSSLENEEYGNESFE 597          
The following BLAST results are available for this feature:
BLAST of DY305812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ARFB_ARATH1.138e-6154.13Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ2.225e-4945.71Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ4.957e-4952.04Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSJ1.104e-4848.33Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI1.104e-4848.33Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFI_ARATH2.920e-3340.36Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]
ARFG_ORYSJ3.569e-3135.96Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFA_ARATH1.356e-3041.57Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFK_ARATH7.442e-2952.00Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFR_ARATH4.824e-2854.46Auxin response factor 18 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2BG10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305812 ID=DY305812; Name=DY305812; organism=Citrus sinensis; type=EST; length=1257bp
GAATTTTGAAAATTCAGCTCATTCGAGAGAGTTGATGCCCAAATCAGCAA
TGGTGCAAGACCAAGAGGCTGGAAAATCTAAGGACTGCAAGCTTTTTGGC
ATTCCCCTCTTCAGTAACCATGTTATGCCAGAGCCAGTAGTATCACATAG
AAACACCATGAATGAGCCGGCTGGAAACTTAGATCAACAATTTCGTGCAT
TTGAATCAGATCAAAAGTCAGAACATTCTAAAAGCTCAAAATTGGCAGAT
GATAATCAAGTTTTCAATGAGCACGAGAAACCGTCCCAGCCTTCTCAGAC
CCACACTAAGGATGTTCGTAGCAAAACGCAGTGTGGTTCGACTAGGAGTT
GTACTAAGGTTCAAAAGCAGGGAATTGCACTTGGTAGGTCTGTGGATCTT
TCTAAGTTCAACAACTATGACGAATTGATTGCCGAACTGGATCAGTTATT
TGAATTTGATGGTGAATTAATGGCTCCCAAGAAAAATTGGCTTATTGTAT
ATACTGATGATGAGGGTGACATGATGCTTGTTGGAGATGATCCATGGCAG
GAGTTTTGTGGTATGGTACGCAAAATTTTCATCTACACAAAAGAGGAGGT
CCTGAAGATGAACTCAGTGTCTTTAAGCTCGAAGGGTGAGGATAGTCCAA
TGAATGGGGAAGGCATTGATGCAAAAGAAGTGAAACAGCCACTTCCTTTA
GCATCTAATGCAGAGAATTTTTAGGTGTGGTTTTGATGGTTCAAGGTTTT
GTTGCAGCATCAGAAAGAAGATATTCAGGGCATTCTATTTTGGATTATGA
ACTAATAGATGGATGTCAATCCTCCTCGTAGACGGCATGACTATCCAATT
TTGGGGCATGGTATATTTGTGTCCGACTCATATAAAACATTCAATATGTA
TACCCCCTATTTTGAGCATGCCAATTCTAACTTTTGCTTTCCCGAACGAA
TCCCTTTTGGTTACAAAATTGGTTACCCCCTCCTTTTCCACCTCCTTAAA
TGGAAATAGCCCAAAGTTTTATAAAAAAAAAAAAAAAAAAAATTCCGAGG
GGGGGGGCCCGGGACCCCCTTTTCCCCCATAAAGGGGGACCCAAATTAAA
ATTTCCCGGGGCCGCCCTTTTTATCAAACGGCCCGGGGCGGGGGAAAAAA
AACCCCGGGGGCGTTTCCCCCAATTCTTTAATCCCCCCCTCTTTGGCCCC
CCAAATACCCCCCCCTCTTTTTTCTCCCCCGCGCTTCGGGGGGGGAAAAA
AAATTAT
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